Wall clock time and date at job start Mon Mar 30 2020 03:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46915 * 2 1 4 4 C 1.50695 * 109.47438 * 120.00328 * 2 1 3 5 5 H 1.08001 * 119.99867 * 120.00091 * 4 2 1 6 6 C 1.37882 * 119.99979 * 300.00011 * 4 2 1 7 7 N 1.31516 * 119.99721 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99795 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47065 * 90.00198 * 8 6 4 10 10 H 1.48502 * 109.46616 * 210.00036 * 8 6 4 11 11 H 1.48501 * 109.47317 * 329.99581 * 8 6 4 12 12 N 1.46504 * 109.47153 * 240.00836 * 2 1 3 13 13 C 1.34770 * 120.00094 * 84.99696 * 12 2 1 14 14 O 1.21281 * 120.00244 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99761 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47152 * 59.99841 * 15 13 12 17 17 C 1.53005 * 109.47304 * 179.97438 * 15 13 12 18 18 C 1.52997 * 109.47452 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 15 20 20 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 21 21 N 1.46901 * 109.46860 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47233 * 60.00194 * 19 18 17 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 19 18 24 24 H 1.08995 * 109.47147 * 59.99692 * 1 2 3 25 25 H 1.08992 * 109.46638 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46734 * 299.99758 * 1 2 3 27 27 H 0.96997 * 119.99443 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99455 * 264.99876 * 12 2 1 29 29 H 1.09002 * 109.46935 * 59.99966 * 17 15 13 30 30 H 1.09001 * 109.46812 * 300.00308 * 17 15 13 31 31 H 1.08993 * 109.47194 * 179.97438 * 18 17 15 32 32 H 1.09002 * 109.46695 * 59.99734 * 18 17 15 33 33 H 1.00908 * 110.99847 * 60.00104 * 21 19 18 34 34 H 1.00898 * 110.99877 * 183.95284 * 21 19 18 35 35 H 1.09002 * 109.47398 * 59.99826 * 22 19 18 36 36 H 1.09001 * 109.47194 * 180.02562 * 22 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 23 22 19 38 38 H 1.09002 * 109.47153 * 300.00319 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8598 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8027 0.8724 2.6999 10 1 0.9760 1.9948 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0184 -0.6904 -1.1963 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4116 15 6 2.6489 -0.7284 -3.5878 16 1 1.9760 -1.5503 -3.8327 17 6 2.6998 0.2546 -4.7592 18 6 3.2087 -0.4668 -6.0087 19 6 4.6112 -1.0177 -5.7439 20 1 5.2842 -0.1960 -5.4994 21 7 5.0996 -1.7109 -6.9435 22 6 4.5602 -2.0009 -4.5727 23 6 4.0514 -1.2795 -3.3231 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9034 -0.5282 4.4374 28 1 2.2491 -1.6317 -1.1528 29 1 3.3725 1.0767 -4.5145 30 1 1.7005 0.6468 -4.9480 31 1 3.2445 0.2335 -6.8432 32 1 2.5356 -1.2886 -6.2531 33 1 5.1423 -1.0826 -7.7319 34 1 5.9972 -2.1392 -6.7734 35 1 3.8872 -2.8227 -4.8171 36 1 5.5596 -2.3930 -4.3837 37 1 4.0155 -1.9796 -2.4885 38 1 4.7244 -0.4576 -3.0786 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710981062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:08 Heat of formation + Delta-G solvation = -85.447885 kcal Electronic energy + Delta-G solvation = -17711.118809 eV Core-core repulsion = 14972.192252 eV Total energy + Delta-G solvation = -2738.926556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.15742 -39.01777 -36.83149 -34.66762 -34.27632 -32.02024 -31.45043 -29.15607 -27.23152 -24.33413 -23.63722 -22.39579 -21.13974 -20.61625 -19.08468 -17.81369 -17.29868 -16.53314 -16.36530 -16.14316 -15.96949 -15.30102 -14.99447 -14.86377 -14.70133 -14.14333 -13.88380 -13.63394 -13.21016 -13.13583 -12.90340 -12.72346 -12.49889 -12.22900 -12.14838 -12.02639 -11.61884 -11.48136 -11.29327 -10.99064 -10.87943 -10.55838 -9.85940 -9.56397 -8.38929 -6.44523 1.26243 1.34465 1.44003 1.77294 2.25380 2.48050 2.97355 3.47761 3.68393 3.77146 3.96746 4.19116 4.26297 4.38866 4.43318 4.46431 4.50651 4.56960 4.58210 4.70329 4.83279 4.96290 5.03562 5.06797 5.13017 5.24630 5.25965 5.31823 5.34571 5.42737 5.49028 5.66422 6.13663 6.29706 6.57105 6.66409 6.89105 7.19013 7.46969 8.76334 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047172 B = 0.005304 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.434398 B = 5277.318122 C = 5657.070009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.239 3.761 3 H 0.019 0.981 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.265 1.265 12 N -0.700 5.700 13 C 0.503 3.497 14 O -0.598 6.598 15 C -0.096 4.096 16 H 0.116 0.884 17 C -0.093 4.093 18 C -0.102 4.102 19 C 0.090 3.910 20 H 0.030 0.970 21 N -0.850 5.850 22 C -0.102 4.102 23 C -0.107 4.107 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.270 0.730 28 H 0.407 0.593 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.348 0.652 34 H 0.348 0.652 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -2.444 -19.157 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.134 3.866 3 H 0.037 0.963 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.190 1.190 12 N -0.349 5.349 13 C 0.291 3.709 14 O -0.479 6.479 15 C -0.117 4.117 16 H 0.134 0.866 17 C -0.132 4.132 18 C -0.139 4.139 19 C -0.022 4.022 20 H 0.048 0.952 21 N -0.381 5.381 22 C -0.140 4.140 23 C -0.145 4.145 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.242 0.758 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.741 -2.092 -18.906 19.218 hybrid contribution 0.453 1.063 0.931 1.484 sum 3.195 -1.030 -17.974 18.285 Atomic orbital electron populations 1.22335 0.97882 1.01687 0.99346 1.18761 0.91209 0.93116 0.83498 0.96268 1.21255 1.32328 1.13565 0.89889 0.92421 1.25540 0.96814 0.99262 0.95362 1.69974 1.46704 1.41879 0.98644 0.86010 0.79871 0.80409 0.77102 1.18485 1.21894 1.19007 1.46071 1.65270 1.14337 1.09202 1.21420 0.76862 0.87019 0.85585 1.90613 1.53122 1.18229 1.85983 1.21370 0.99260 0.99509 0.91557 0.86581 1.21259 1.01576 0.96913 0.93408 1.21479 0.96168 0.99995 0.96303 1.21312 0.95624 0.94565 0.90666 0.95250 1.58702 1.34718 1.38284 1.06397 1.21479 1.02141 0.97972 0.92419 1.21489 0.93632 1.00152 0.99230 0.93690 0.91554 0.94141 0.92042 0.75792 0.93027 0.92043 0.91062 0.90675 0.83916 0.83853 0.90373 0.90802 0.90626 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.81 8.96 71.98 0.65 -6.17 16 2 C 0.24 11.51 2.15 44.24 0.10 11.61 16 3 H 0.02 1.05 6.64 -2.39 -0.02 1.03 16 4 C -0.53 -29.15 9.31 25.60 0.24 -28.92 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 6 C 0.03 1.70 5.45 84.66 0.46 2.16 16 7 N -0.93 -56.01 13.96 21.45 0.30 -55.71 16 8 Si 0.94 45.13 24.37 68.60 1.67 46.80 16 9 H -0.26 -11.69 6.87 99.48 0.68 -11.00 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.27 -12.79 6.53 99.48 0.65 -12.14 16 12 N -0.70 -27.58 4.96 -446.09 -2.21 -29.80 16 13 C 0.50 18.72 7.12 87.66 0.62 19.35 16 14 O -0.60 -27.19 15.65 -3.03 -0.05 -27.23 16 15 C -0.10 -2.49 2.52 -11.54 -0.03 -2.52 16 16 H 0.12 2.53 8.14 -2.39 -0.02 2.52 16 17 C -0.09 -2.29 4.49 30.60 0.14 -2.15 16 18 C -0.10 -1.86 5.50 30.59 0.17 -1.70 16 19 C 0.09 1.53 3.25 44.92 0.15 1.67 16 20 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 21 N -0.85 -11.67 9.25 -168.68 -1.56 -13.23 16 22 C -0.10 -1.80 5.46 30.59 0.17 -1.64 16 23 C -0.11 -2.43 5.10 30.59 0.16 -2.27 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.41 13.98 7.96 -92.70 -0.74 13.24 16 29 H 0.05 1.43 8.10 -2.39 -0.02 1.42 16 30 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.35 3.87 9.04 -89.69 -0.81 3.06 16 34 H 0.35 3.89 8.99 -89.70 -0.81 3.08 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.71 7.57 -2.39 -0.02 1.69 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.96 297.24 -0.40 -67.37 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -1.36 Total: 22.37 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 2.81 Total: -10.56 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.47 Total: -98.74 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.67 Total: 46.80 kcal Total: -66.96 -0.40 -67.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710981062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.081 kcal (2) G-P(sol) polarization free energy of solvation -66.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds