Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46953 * 2 1 4 4 C 1.50693 * 109.47328 * 239.99779 * 2 1 3 5 5 H 1.08000 * 120.00347 * 273.50410 * 4 2 1 6 6 C 1.37885 * 120.00088 * 93.50564 * 4 2 1 7 7 N 1.31513 * 120.00058 * 182.93569 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 2.93397 * 6 4 2 9 9 H 1.48503 * 109.47089 * 84.67626 * 8 6 4 10 10 H 1.48493 * 109.47231 * 204.67622 * 8 6 4 11 11 H 1.48500 * 109.47160 * 324.67976 * 8 6 4 12 12 N 1.46502 * 109.47120 * 119.99609 * 2 1 3 13 13 C 1.34777 * 119.99986 * 275.00715 * 12 2 1 14 14 O 1.21277 * 120.00032 * 0.26907 * 13 12 2 15 15 C 1.50710 * 119.99852 * 180.02562 * 13 12 2 16 16 H 1.09002 * 110.28177 * 331.49738 * 15 13 12 17 17 C 1.54370 * 110.32185 * 209.37221 * 15 13 12 18 18 N 1.48719 * 104.51607 * 217.31816 * 17 15 13 19 19 C 1.48557 * 104.28940 * 39.36369 * 18 17 15 20 20 C 1.54257 * 110.32285 * 93.62508 * 15 13 12 21 21 C 1.53003 * 110.31955 * 237.79036 * 20 15 13 22 22 C 1.52996 * 110.32730 * 359.97438 * 20 15 13 23 23 H 1.08993 * 109.47571 * 305.03359 * 1 2 3 24 24 H 1.08998 * 109.47177 * 65.03672 * 1 2 3 25 25 H 1.09001 * 109.47090 * 185.02969 * 1 2 3 26 26 H 0.97003 * 119.99465 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99930 * 94.99911 * 12 2 1 28 28 H 1.09004 * 110.41827 * 336.02944 * 17 15 13 29 29 H 1.09009 * 110.41481 * 98.47107 * 17 15 13 30 30 H 1.00899 * 110.92070 * 279.80653 * 18 17 15 31 31 H 1.08997 * 110.41412 * 201.79554 * 19 18 17 32 32 H 1.09006 * 110.40863 * 79.35154 * 19 18 17 33 33 H 1.08998 * 109.47077 * 60.00704 * 21 20 15 34 34 H 1.09009 * 109.46728 * 180.02562 * 21 20 15 35 35 H 1.08995 * 109.47189 * 300.00101 * 21 20 15 36 36 H 1.08999 * 109.46808 * 60.76219 * 22 20 15 37 37 H 1.09003 * 109.46931 * 180.75819 * 22 20 15 38 38 H 1.09003 * 109.47036 * 300.76059 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1585 -1.7830 -1.2210 6 6 2.3310 0.0089 -2.3682 7 7 2.7141 -0.6164 -3.4598 8 14 2.1914 1.8716 -2.3590 9 1 3.4449 2.4594 -1.8219 10 1 1.9704 2.3583 -3.7444 11 1 1.0478 2.2781 -1.5032 12 7 2.0183 -0.6905 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8537 1.1573 2.4128 15 6 2.6498 -0.7284 3.5876 16 1 2.3918 -1.7866 3.5450 17 6 2.0579 -0.0829 4.8588 18 7 3.1639 -0.1326 5.8518 19 6 4.3811 0.1838 5.0610 20 6 4.1767 -0.5540 3.7204 21 6 4.8664 -1.9193 3.7548 22 6 4.7183 0.2867 2.5625 23 1 -0.3634 0.5899 0.8414 24 1 -0.3633 0.4337 -0.9316 25 1 -0.3633 -1.0237 0.0901 26 1 2.9246 -0.1103 -4.2601 27 1 2.2490 -1.6317 1.1527 28 1 1.7702 0.9499 4.6622 29 1 1.2010 -0.6563 5.2127 30 1 3.2321 -1.0485 6.2695 31 1 5.2713 -0.1884 5.5680 32 1 4.4581 1.2585 4.8955 33 1 4.6490 -2.4595 2.8334 34 1 5.9434 -1.7800 3.8492 35 1 4.4983 -2.4909 4.6067 36 1 4.2558 1.2735 2.5826 37 1 5.7988 0.3897 2.6627 38 1 4.4862 -0.2043 1.6174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711390109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = -73.824882 kcal Electronic energy + Delta-G solvation = -18357.713054 eV Core-core repulsion = 15619.290508 eV Total energy + Delta-G solvation = -2738.422545 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62918 -39.13637 -36.66515 -34.45639 -33.94671 -31.99804 -30.17560 -28.31793 -27.34529 -26.18587 -23.97781 -22.36288 -21.37216 -20.22342 -18.93377 -17.82478 -17.36366 -17.26764 -16.11399 -15.86918 -15.44641 -15.00328 -14.82387 -14.57373 -14.40133 -14.14597 -13.86773 -13.43247 -13.15559 -13.10293 -12.89086 -12.84283 -12.62743 -12.49063 -12.39753 -11.92254 -11.86085 -11.71956 -11.59045 -11.24498 -10.89422 -10.64266 -9.79338 -9.65421 -8.41394 -6.46930 1.25383 1.30260 1.40791 1.77667 2.23932 2.45325 3.00483 3.23426 3.55096 3.72197 3.90705 4.14743 4.16828 4.32486 4.37011 4.45178 4.55069 4.71041 4.72296 4.74831 4.81505 4.87760 4.98847 5.02936 5.07726 5.11290 5.17451 5.26152 5.34088 5.38453 5.43547 5.61857 5.74966 6.10870 6.50426 6.57553 6.91565 7.19187 7.48364 8.73618 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032967 B = 0.007137 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.135799 B = 3922.066757 C = 4116.284024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.236 3.764 3 H 0.025 0.975 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.923 3.077 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.257 1.257 12 N -0.703 5.703 13 C 0.518 3.482 14 O -0.596 6.596 15 C -0.134 4.134 16 H 0.115 0.885 17 C 0.057 3.943 18 N -0.663 5.663 19 C 0.054 3.946 20 C -0.078 4.078 21 C -0.133 4.133 22 C -0.148 4.148 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.270 0.730 27 H 0.403 0.597 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.350 0.650 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 -3.193 16.771 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.132 3.868 3 H 0.043 0.957 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.165 4.165 7 N -0.568 5.568 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.181 1.181 12 N -0.352 5.352 13 C 0.305 3.695 14 O -0.478 6.478 15 C -0.158 4.158 16 H 0.133 0.867 17 C -0.074 4.074 18 N -0.289 5.289 19 C -0.076 4.076 20 C -0.081 4.081 21 C -0.190 4.190 22 C -0.206 4.206 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.238 0.762 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.167 0.833 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.729 -1.683 16.948 17.248 hybrid contribution 0.162 -0.251 -1.532 1.561 sum 2.891 -1.934 15.415 15.803 Atomic orbital electron populations 1.22132 0.97307 1.01013 0.99640 1.18803 0.91799 0.92905 0.83286 0.95688 1.21178 1.44392 0.95019 0.95648 0.92490 1.25548 0.93824 1.02040 0.95129 1.69969 1.46456 1.37660 1.02693 0.86121 0.79663 0.81751 0.77682 1.20214 1.20163 1.18121 1.46416 1.65164 1.14216 1.09375 1.20865 0.76315 0.86984 0.85288 1.90607 1.53212 1.18138 1.85805 1.22924 0.97234 1.01848 0.93744 0.86657 1.22951 0.95185 1.01349 0.87898 1.63268 1.02843 1.34893 1.27921 1.23120 0.94217 0.99838 0.90392 1.21832 0.91606 0.97809 0.96815 1.21879 1.00903 0.93610 1.02648 1.21980 1.01770 0.99116 0.97751 0.94645 0.93406 0.92198 0.92044 0.76231 0.91552 0.88698 0.83308 0.87961 0.91990 0.92734 0.90989 0.90452 0.94574 0.90668 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 9.43 71.98 0.68 -5.48 16 2 C 0.24 11.17 2.16 44.24 0.10 11.27 16 3 H 0.03 1.31 4.91 -2.39 -0.01 1.30 16 4 C -0.52 -28.24 9.05 25.60 0.23 -28.00 16 5 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 6 C 0.04 1.97 5.47 84.66 0.46 2.44 16 7 N -0.93 -55.26 13.96 21.45 0.30 -54.96 16 8 Si 0.92 44.97 26.71 68.60 1.83 46.81 16 9 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.26 -12.28 6.90 99.48 0.69 -11.60 16 12 N -0.70 -27.50 4.66 -446.10 -2.08 -29.58 16 13 C 0.52 19.10 4.74 87.66 0.42 19.51 16 14 O -0.60 -26.86 14.62 -3.02 -0.04 -26.91 16 15 C -0.13 -3.48 3.09 -10.65 -0.03 -3.51 16 16 H 0.12 2.39 7.71 -2.39 -0.02 2.37 16 17 C 0.06 1.39 6.98 86.42 0.60 1.99 16 18 N -0.66 -13.44 7.63 -500.47 -3.82 -17.26 16 19 C 0.05 1.13 6.56 86.45 0.57 1.70 16 20 C -0.08 -1.81 1.03 -51.29 -0.05 -1.87 16 21 C -0.13 -2.29 8.23 71.98 0.59 -1.70 16 22 C -0.15 -4.48 7.29 71.98 0.52 -3.95 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.40 13.91 8.59 -92.71 -0.80 13.11 16 28 H 0.07 2.12 6.88 -2.39 -0.02 2.10 16 29 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.35 5.13 8.92 -89.69 -0.80 4.33 16 31 H 0.10 1.58 7.86 -2.39 -0.02 1.56 16 32 H 0.06 1.56 7.82 -2.38 -0.02 1.55 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 1.29 6.99 -2.39 -0.02 1.28 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.04 1.52 7.18 -2.39 -0.02 1.50 16 Total: -1.00 -66.44 300.86 -0.29 -66.72 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.56 Total: 22.79 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.09 Total: -7.61 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -5.60 Total: -101.80 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.04 Total: -26.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.83 Total: 46.81 kcal Total: -66.44 -0.29 -66.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711390109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.101 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds