Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47157 * 2 1 4 4 C 1.50704 * 109.46929 * 119.99817 * 2 1 3 5 5 H 1.07997 * 119.99929 * 119.99734 * 4 2 1 6 6 C 1.37878 * 119.99720 * 300.00138 * 4 2 1 7 7 N 1.31515 * 120.00047 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00240 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47027 * 90.00240 * 8 6 4 10 10 H 1.48497 * 109.47193 * 210.00076 * 8 6 4 11 11 H 1.48497 * 109.47276 * 330.00577 * 8 6 4 12 12 N 1.46500 * 109.47102 * 239.99449 * 2 1 3 13 13 C 1.34776 * 119.99766 * 85.00683 * 12 2 1 14 14 O 1.21289 * 120.00070 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00274 * 179.97438 * 13 12 2 16 16 H 1.09007 * 110.77984 * 37.32137 * 15 13 12 17 17 C 1.54936 * 110.72625 * 160.57256 * 15 13 12 18 18 N 1.48538 * 103.22561 * 155.77429 * 17 15 13 19 19 C 1.47909 * 105.81673 * 320.79104 * 18 17 15 20 20 C 1.53991 * 107.06022 * 25.33345 * 19 18 17 21 21 C 1.52996 * 110.30962 * 117.68988 * 20 19 18 22 22 C 1.52998 * 110.30703 * 239.76185 * 20 19 18 23 23 H 1.08995 * 109.47042 * 300.00701 * 1 2 3 24 24 H 1.09007 * 109.46799 * 60.00189 * 1 2 3 25 25 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 26 26 H 0.96991 * 120.00187 * 179.97438 * 7 6 4 27 27 H 0.96999 * 120.00272 * 264.99741 * 12 2 1 28 28 H 1.08996 * 110.66873 * 37.33740 * 17 15 13 29 29 H 1.09001 * 110.66319 * 274.20483 * 17 15 13 30 30 H 1.00898 * 111.00013 * 81.30266 * 18 17 15 31 31 H 1.08999 * 109.91702 * 265.97844 * 19 18 17 32 32 H 1.09005 * 110.07754 * 144.77797 * 19 18 17 33 33 H 1.08996 * 109.47161 * 61.45000 * 21 20 19 34 34 H 1.09001 * 109.47133 * 301.45341 * 21 20 19 35 35 H 1.08999 * 109.46956 * 181.45591 * 21 20 19 36 36 H 1.09003 * 109.46812 * 303.25066 * 22 20 19 37 37 H 1.08994 * 109.47537 * 63.25161 * 22 20 19 38 38 H 1.09007 * 109.47068 * 183.25761 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6258 1.2800 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9069 11 1 0.8490 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8584 1.1583 -2.4117 15 6 2.6501 -0.7287 -3.5874 16 1 2.2656 -1.7478 -3.6299 17 6 2.2679 0.0554 -4.8679 18 7 3.2869 -0.3869 -5.8540 19 6 4.5585 -0.4822 -5.1046 20 6 4.1955 -0.7249 -3.6279 21 6 4.7423 -2.0757 -3.1618 22 6 4.7490 0.4016 -2.7530 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9038 -0.5272 4.4375 27 1 2.2491 -1.6319 -1.1525 28 1 2.3389 1.1295 -4.6968 29 1 1.2665 -0.2168 -5.2011 30 1 3.0372 -1.2775 -6.2572 31 1 5.1172 0.4487 -5.2015 32 1 5.1540 -1.3135 -5.4822 33 1 5.8292 -2.0755 -3.2434 34 1 4.3313 -2.8690 -3.7862 35 1 4.4558 -2.2450 -2.1239 36 1 5.8271 0.4759 -2.8954 37 1 4.2796 1.3442 -3.0342 38 1 4.5348 0.1870 -1.7059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711390110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = -43.504982 kcal Electronic energy + Delta-G solvation = -18310.851737 eV Core-core repulsion = 15573.743961 eV Total energy + Delta-G solvation = -2737.107776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32164 -37.83387 -34.97701 -33.12779 -32.32042 -30.41579 -28.95581 -27.28568 -25.30705 -25.08984 -22.77626 -21.00375 -19.80684 -18.90883 -17.11826 -16.59813 -15.94187 -15.56496 -14.69522 -14.64509 -13.88594 -13.63125 -13.45805 -13.25712 -13.01479 -12.87481 -12.27121 -12.21342 -11.90421 -11.85025 -11.60123 -11.47495 -11.24745 -10.85215 -10.81359 -10.63438 -10.53909 -10.20055 -9.70832 -9.24658 -9.12998 -8.77196 -8.64057 -8.14564 -6.22620 -4.25060 3.19693 3.22771 3.34204 3.38837 3.89601 4.22088 4.30285 4.57422 4.74498 4.88450 5.12400 5.18731 5.29594 5.33790 5.42749 5.53296 5.69782 5.77557 5.79232 5.99472 6.03237 6.15059 6.16117 6.29656 6.32430 6.37145 6.51057 6.55333 6.63210 6.85088 7.18672 7.26296 7.29833 7.51600 8.14616 8.52799 8.74564 8.94912 9.38645 10.89580 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037938 B = 0.006739 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.868173 B = 4154.041702 C = 4495.288957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.521 3.479 14 O -0.555 6.555 15 C -0.143 4.143 16 H 0.090 0.910 17 C 0.061 3.939 18 N -0.673 5.673 19 C 0.051 3.949 20 C -0.079 4.079 21 C -0.141 4.141 22 C -0.146 4.146 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.267 0.733 27 H 0.393 0.607 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.333 0.667 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -2.466 -14.853 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.348 5.348 13 C 0.306 3.694 14 O -0.434 6.434 15 C -0.166 4.166 16 H 0.109 0.891 17 C -0.069 4.069 18 N -0.298 5.298 19 C -0.078 4.078 20 C -0.081 4.081 21 C -0.198 4.198 22 C -0.203 4.203 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.880 -0.967 -15.003 15.307 hybrid contribution -0.662 -0.688 1.020 1.397 sum 2.218 -1.656 -13.983 14.254 Atomic orbital electron populations 1.22450 0.99416 1.00772 0.99278 1.19084 0.90058 0.94652 0.82922 0.93446 1.21037 1.33225 1.14373 0.88566 0.90287 1.24833 0.95487 0.96687 0.95539 1.69865 1.44926 1.40133 0.98043 0.86877 0.80527 0.83648 0.77441 1.20337 1.22152 1.18671 1.46234 1.65044 1.13724 1.09846 1.20022 0.77717 0.87304 0.84407 1.90641 1.51564 1.16021 1.85160 1.23053 0.96551 1.00848 0.96138 0.89129 1.23042 0.94908 1.01546 0.87371 1.62773 1.03030 1.33261 1.30750 1.22908 0.92731 1.01940 0.90252 1.21706 0.92597 0.96870 0.96899 1.21933 1.01006 0.94966 1.01931 1.21972 1.00321 0.97939 1.00115 0.93503 0.94570 0.92900 0.92294 0.77380 0.88360 0.90712 0.85204 0.90318 0.91422 0.92190 0.92777 0.91758 0.92578 0.91611 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.96 37.16 0.33 -3.28 16 2 C 0.24 5.61 2.15 -69.08 -0.15 5.46 16 3 H 0.05 1.25 6.63 -51.93 -0.34 0.90 16 4 C -0.53 -14.34 9.31 -34.44 -0.32 -14.66 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 8 Si 0.89 21.83 24.37 -169.99 -4.14 17.69 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 12 N -0.70 -13.71 5.05 -54.93 -0.28 -13.99 16 13 C 0.52 9.56 5.00 -10.99 -0.05 9.51 16 14 O -0.55 -12.15 14.80 5.55 0.08 -12.07 16 15 C -0.14 -1.95 2.93 -89.91 -0.26 -2.22 16 16 H 0.09 1.08 7.86 -51.92 -0.41 0.68 16 17 C 0.06 0.80 6.81 -1.90 -0.01 0.79 16 18 N -0.67 -7.56 7.51 -110.08 -0.83 -8.39 16 19 C 0.05 0.56 6.85 -2.75 -0.02 0.54 16 20 C -0.08 -0.97 0.90 -153.15 -0.14 -1.11 16 21 C -0.14 -1.53 8.22 37.16 0.31 -1.23 16 22 C -0.15 -2.13 7.21 37.16 0.27 -1.87 16 23 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 24 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 27 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 28 H 0.10 1.54 7.24 -51.93 -0.38 1.16 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.33 3.06 8.92 -39.29 -0.35 2.71 16 31 H 0.08 0.90 7.68 -51.93 -0.40 0.51 16 32 H 0.07 0.61 7.68 -51.93 -0.40 0.21 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.07 7.44 -51.93 -0.39 0.69 16 38 H 0.07 1.14 7.46 -51.92 -0.39 0.75 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -30.40 295.98 -6.21 -36.61 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.13 Total: 7.25 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.15 Total: -5.97 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.33 Total: -47.97 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.40 -6.21 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711390110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.895 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds