Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47157 * 2 1 4 4 C 1.50704 * 109.46929 * 119.99817 * 2 1 3 5 5 H 1.07997 * 119.99929 * 119.99734 * 4 2 1 6 6 C 1.37878 * 119.99720 * 300.00138 * 4 2 1 7 7 N 1.31515 * 120.00047 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00240 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47027 * 90.00240 * 8 6 4 10 10 H 1.48497 * 109.47193 * 210.00076 * 8 6 4 11 11 H 1.48497 * 109.47276 * 330.00577 * 8 6 4 12 12 N 1.46500 * 109.47102 * 239.99449 * 2 1 3 13 13 C 1.34776 * 119.99766 * 85.00683 * 12 2 1 14 14 O 1.21289 * 120.00070 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00274 * 179.97438 * 13 12 2 16 16 H 1.09007 * 110.77984 * 37.32137 * 15 13 12 17 17 C 1.54936 * 110.72625 * 160.57256 * 15 13 12 18 18 N 1.48538 * 103.22561 * 155.77429 * 17 15 13 19 19 C 1.47909 * 105.81673 * 320.79104 * 18 17 15 20 20 C 1.53991 * 107.06022 * 25.33345 * 19 18 17 21 21 C 1.52996 * 110.30962 * 117.68988 * 20 19 18 22 22 C 1.52998 * 110.30703 * 239.76185 * 20 19 18 23 23 H 1.08995 * 109.47042 * 300.00701 * 1 2 3 24 24 H 1.09007 * 109.46799 * 60.00189 * 1 2 3 25 25 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 26 26 H 0.96991 * 120.00187 * 179.97438 * 7 6 4 27 27 H 0.96999 * 120.00272 * 264.99741 * 12 2 1 28 28 H 1.08996 * 110.66873 * 37.33740 * 17 15 13 29 29 H 1.09001 * 110.66319 * 274.20483 * 17 15 13 30 30 H 1.00898 * 111.00013 * 81.30266 * 18 17 15 31 31 H 1.08999 * 109.91702 * 265.97844 * 19 18 17 32 32 H 1.09005 * 110.07754 * 144.77797 * 19 18 17 33 33 H 1.08996 * 109.47161 * 61.45000 * 21 20 19 34 34 H 1.09001 * 109.47133 * 301.45341 * 21 20 19 35 35 H 1.08999 * 109.46956 * 181.45591 * 21 20 19 36 36 H 1.09003 * 109.46812 * 303.25066 * 22 20 19 37 37 H 1.08994 * 109.47537 * 63.25161 * 22 20 19 38 38 H 1.09007 * 109.47068 * 183.25761 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6258 1.2800 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9069 11 1 0.8490 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8584 1.1583 -2.4117 15 6 2.6501 -0.7287 -3.5874 16 1 2.2656 -1.7478 -3.6299 17 6 2.2679 0.0554 -4.8679 18 7 3.2869 -0.3869 -5.8540 19 6 4.5585 -0.4822 -5.1046 20 6 4.1955 -0.7249 -3.6279 21 6 4.7423 -2.0757 -3.1618 22 6 4.7490 0.4016 -2.7530 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9038 -0.5272 4.4375 27 1 2.2491 -1.6319 -1.1525 28 1 2.3389 1.1295 -4.6968 29 1 1.2665 -0.2168 -5.2011 30 1 3.0372 -1.2775 -6.2572 31 1 5.1172 0.4487 -5.2015 32 1 5.1540 -1.3135 -5.4822 33 1 5.8292 -2.0755 -3.2434 34 1 4.3313 -2.8690 -3.7862 35 1 4.4558 -2.2450 -2.1239 36 1 5.8271 0.4759 -2.8954 37 1 4.2796 1.3442 -3.0342 38 1 4.5348 0.1870 -1.7059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711390110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = -67.618668 kcal Electronic energy + Delta-G solvation = -18311.897385 eV Core-core repulsion = 15573.743961 eV Total energy + Delta-G solvation = -2738.153424 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58902 -39.18909 -36.78825 -34.49024 -33.97821 -32.04319 -30.25519 -28.32374 -27.25096 -26.19527 -24.15567 -22.42649 -21.36551 -20.24083 -18.79785 -17.84079 -17.44222 -17.30779 -16.24853 -15.98343 -15.27205 -15.00786 -14.78171 -14.69702 -14.36139 -14.17919 -14.12170 -13.75341 -13.30769 -13.12058 -12.88435 -12.82045 -12.71000 -12.49393 -12.17031 -11.82094 -11.72353 -11.60569 -11.58404 -11.29744 -10.89382 -10.65595 -9.86552 -9.59178 -8.40352 -6.45823 1.24412 1.32959 1.42206 1.74764 2.23650 2.43778 2.95895 3.23004 3.51894 3.69990 3.90636 4.12173 4.13998 4.30895 4.34150 4.43588 4.55552 4.58116 4.69444 4.70472 4.77782 4.85050 4.95898 4.98356 5.04388 5.12530 5.19470 5.28137 5.29636 5.39091 5.41749 5.65129 5.68224 6.12082 6.51494 6.55647 6.87612 7.17716 7.45757 8.74898 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037938 B = 0.006739 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.868173 B = 4154.041702 C = 4495.288957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.019 0.981 4 C -0.531 4.531 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.937 3.063 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.265 1.265 12 N -0.700 5.700 13 C 0.521 3.479 14 O -0.592 6.592 15 C -0.135 4.135 16 H 0.118 0.882 17 C 0.065 3.935 18 N -0.670 5.670 19 C 0.057 3.943 20 C -0.075 4.075 21 C -0.138 4.138 22 C -0.142 4.142 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.270 0.730 27 H 0.404 0.596 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.350 0.650 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -3.438 -16.908 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.137 3.863 3 H 0.036 0.964 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.765 3.235 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.190 1.190 12 N -0.348 5.348 13 C 0.308 3.692 14 O -0.474 6.474 15 C -0.158 4.158 16 H 0.136 0.864 17 C -0.065 4.065 18 N -0.297 5.297 19 C -0.073 4.073 20 C -0.077 4.077 21 C -0.195 4.195 22 C -0.200 4.200 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.239 0.761 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.167 0.833 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.688 -1.972 -17.089 17.411 hybrid contribution -0.515 -0.393 1.622 1.746 sum 2.174 -2.365 -15.467 15.797 Atomic orbital electron populations 1.22343 0.97923 1.01662 0.99374 1.18723 0.91115 0.93013 0.83413 0.96354 1.21241 1.32266 1.13504 0.89893 0.92536 1.25534 0.96827 0.99226 0.95398 1.69967 1.46659 1.41896 0.98635 0.86031 0.79895 0.80474 0.77121 1.18488 1.21910 1.19012 1.46083 1.65353 1.14179 1.09233 1.20806 0.76419 0.86903 0.85083 1.90623 1.52992 1.17925 1.85828 1.23111 0.97560 1.01627 0.93546 0.86352 1.22905 0.96311 0.99741 0.87533 1.62683 1.02516 1.34570 1.29955 1.22888 0.92806 1.02822 0.88798 1.21736 0.91399 0.96864 0.97706 1.21920 1.01977 0.94402 1.01186 1.21922 1.01649 0.97843 0.98587 0.94199 0.93602 0.91585 0.92049 0.76115 0.91437 0.89278 0.83259 0.91103 0.88457 0.90870 0.90282 0.93640 0.90563 0.94072 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.78 8.96 71.98 0.65 -6.14 16 2 C 0.24 11.57 2.15 44.25 0.10 11.66 16 3 H 0.02 1.00 6.63 -2.39 -0.02 0.98 16 4 C -0.53 -28.95 9.31 25.60 0.24 -28.72 16 5 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 6 C 0.03 1.70 5.45 84.65 0.46 2.16 16 7 N -0.93 -55.89 13.96 21.45 0.30 -55.59 16 8 Si 0.94 45.11 24.37 68.60 1.67 46.78 16 9 H -0.26 -11.70 6.87 99.48 0.68 -11.01 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.27 -12.81 6.53 99.48 0.65 -12.16 16 12 N -0.70 -27.28 5.05 -446.08 -2.25 -29.53 16 13 C 0.52 18.96 5.00 87.66 0.44 19.39 16 14 O -0.59 -26.34 14.80 -3.06 -0.05 -26.39 16 15 C -0.14 -3.45 2.93 -10.33 -0.03 -3.48 16 16 H 0.12 2.40 7.86 -2.38 -0.02 2.38 16 17 C 0.07 1.59 6.81 86.65 0.59 2.18 16 18 N -0.67 -12.95 7.51 -502.17 -3.77 -16.73 16 19 C 0.06 1.05 6.85 86.44 0.59 1.64 16 20 C -0.08 -1.70 0.90 -51.30 -0.05 -1.75 16 21 C -0.14 -2.58 8.22 71.98 0.59 -1.99 16 22 C -0.14 -4.15 7.21 71.98 0.52 -3.63 16 23 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 24 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.27 15.21 8.31 -92.72 -0.77 14.43 16 27 H 0.40 13.93 8.54 -92.71 -0.79 13.14 16 28 H 0.07 2.10 7.24 -2.39 -0.02 2.08 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.35 4.94 8.92 -89.70 -0.80 4.14 16 31 H 0.07 1.46 7.68 -2.39 -0.02 1.44 16 32 H 0.10 1.30 7.68 -2.38 -0.02 1.28 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.38 7.44 -2.39 -0.02 1.36 16 38 H 0.03 1.21 7.46 -2.38 -0.02 1.19 16 Total: -1.00 -66.80 295.98 -0.62 -67.43 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.61 Total: 22.68 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.09 Total: -8.66 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -5.73 Total: -101.85 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Total: -66.80 -0.62 -67.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711390110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.193 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds