Wall clock time and date at job start Mon Mar 30 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46452 * 2 1 4 4 C 1.50698 * 109.46992 * 119.99491 * 2 1 3 5 5 H 1.08009 * 119.99432 * 120.00217 * 4 2 1 6 6 C 1.37878 * 120.00470 * 299.99955 * 4 2 1 7 7 N 1.31514 * 119.99882 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47256 * 90.00188 * 8 6 4 10 10 H 1.48500 * 109.46918 * 210.00215 * 8 6 4 11 11 H 1.48508 * 109.46946 * 329.99903 * 8 6 4 12 12 N 1.46495 * 109.47126 * 239.99892 * 2 1 3 13 13 C 1.34778 * 120.00222 * 84.99471 * 12 2 1 14 14 O 1.21277 * 119.99821 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00278 * 180.02562 * 13 12 2 16 16 H 1.09009 * 110.28722 * 331.00882 * 15 13 12 17 17 C 1.54380 * 110.32754 * 208.87893 * 15 13 12 18 18 N 1.48714 * 104.51816 * 217.32014 * 17 15 13 19 19 C 1.48558 * 104.28903 * 39.36144 * 18 17 15 20 20 C 1.54264 * 110.32484 * 93.13082 * 15 13 12 21 21 C 1.52996 * 110.32446 * 237.79397 * 20 15 13 22 22 C 1.52994 * 110.32232 * 0.02562 * 20 15 13 23 23 H 1.09006 * 109.47414 * 299.99885 * 1 2 3 24 24 H 1.08999 * 109.47085 * 60.00388 * 1 2 3 25 25 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00323 * 180.02562 * 7 6 4 27 27 H 0.97006 * 120.00145 * 264.99941 * 12 2 1 28 28 H 1.08996 * 110.40954 * 336.03162 * 17 15 13 29 29 H 1.09000 * 110.40853 * 98.46850 * 17 15 13 30 30 H 1.00898 * 111.01634 * 158.96242 * 18 17 15 31 31 H 1.09001 * 110.41298 * 201.79180 * 19 18 17 32 32 H 1.09001 * 110.41021 * 79.34867 * 19 18 17 33 33 H 1.09000 * 109.47323 * 59.99757 * 21 20 15 34 34 H 1.09002 * 109.47469 * 179.97438 * 21 20 15 35 35 H 1.08999 * 109.47266 * 300.00165 * 21 20 15 36 36 H 1.09007 * 109.47323 * 60.37695 * 22 20 15 37 37 H 1.08995 * 109.47387 * 180.37643 * 22 20 15 38 38 H 1.09002 * 109.47371 * 300.38406 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5438 4.4119 10 1 1.3444 -0.9487 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4116 15 6 2.6487 -0.7289 -3.5877 16 1 3.3135 -1.5462 -3.3076 17 6 3.3801 0.2622 -4.5185 18 7 3.0098 -0.1733 -5.8914 19 6 1.5766 -0.5491 -5.7828 20 6 1.4638 -1.2629 -4.4187 21 6 1.5819 -2.7775 -4.6002 22 6 0.1381 -0.9089 -3.7421 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1615 3.4844 27 1 2.2491 -1.6318 -1.1526 28 1 3.0347 1.2798 -4.3367 29 1 4.4583 0.1942 -4.3741 30 1 3.1379 0.5755 -6.5554 31 1 1.2989 -1.2264 -6.5905 32 1 0.9479 0.3412 -5.7991 33 1 1.5784 -3.2618 -3.6237 34 1 0.7386 -3.1399 -5.1880 35 1 2.5126 -3.0100 -5.1176 36 1 0.0491 0.1745 -3.6616 37 1 -0.6885 -1.2981 -4.3366 38 1 0.1090 -1.3508 -2.7461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711390111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:33 Heat of formation + Delta-G solvation = -49.644326 kcal Electronic energy + Delta-G solvation = -18254.853452 eV Core-core repulsion = 15517.479454 eV Total energy + Delta-G solvation = -2737.373998 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17327 -37.54058 -34.75035 -33.15518 -32.27480 -30.02749 -28.35956 -27.23743 -25.26059 -25.15605 -22.60439 -20.78803 -19.67096 -18.73168 -17.01165 -16.06475 -15.97853 -15.09688 -14.94418 -14.23253 -13.89655 -13.82114 -13.40137 -13.16148 -12.52437 -12.45150 -12.27547 -12.00083 -11.66864 -11.56046 -11.31771 -11.06496 -10.97992 -10.81377 -10.75444 -10.60031 -10.37690 -10.29385 -10.22740 -9.05826 -8.92537 -8.57693 -8.54294 -7.88121 -6.12476 -4.21701 3.24291 3.30889 3.32588 3.38179 4.00311 4.32578 4.48763 4.59947 4.77629 5.01454 5.19892 5.37993 5.41089 5.43737 5.62042 5.68387 5.76066 5.80476 5.98582 5.99870 6.09490 6.10454 6.23410 6.33928 6.49650 6.71794 6.82742 6.96600 7.15546 7.27603 7.47487 7.57030 7.69992 7.92141 8.15379 8.68903 8.78814 9.15225 9.46235 10.93459 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.005897 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.604740 B = 4747.041555 C = 4768.555087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.515 3.485 14 O -0.558 6.558 15 C -0.110 4.110 16 H 0.092 0.908 17 C 0.047 3.953 18 N -0.666 5.666 19 C 0.045 3.955 20 C -0.051 4.051 21 C -0.134 4.134 22 C -0.153 4.153 23 H 0.089 0.911 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.335 0.665 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -5.351 -13.400 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.354 5.354 13 C 0.300 3.700 14 O -0.438 6.438 15 C -0.132 4.132 16 H 0.111 0.889 17 C -0.083 4.083 18 N -0.294 5.294 19 C -0.085 4.085 20 C -0.052 4.052 21 C -0.191 4.191 22 C -0.211 4.211 23 H 0.107 0.893 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.149 0.851 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.193 -5.069 -13.235 14.223 hybrid contribution -0.049 -0.027 1.053 1.054 sum 1.144 -5.096 -12.183 13.255 Atomic orbital electron populations 1.22068 0.98520 0.99003 1.00826 1.18718 0.90981 0.93925 0.80112 0.93506 1.21231 1.32363 1.13199 0.90378 0.92114 1.24889 0.94800 0.94970 0.99061 1.69902 1.35875 1.22523 1.23853 0.86452 0.78607 0.79852 0.82211 1.20564 1.21082 1.19847 1.46563 1.64947 1.13439 1.10491 1.20106 0.78226 0.87257 0.84446 1.90625 1.51863 1.16249 1.85029 1.22217 0.97754 0.98952 0.94315 0.88929 1.22868 0.99904 0.97962 0.87552 1.63741 1.17787 1.41081 1.06768 1.23034 0.89492 0.98950 0.97003 1.21131 0.94380 0.95904 0.93765 1.21848 1.01909 0.93518 1.01829 1.22100 0.95262 1.02788 1.00935 0.89257 0.96675 0.95543 0.92599 0.77998 0.91802 0.90140 0.85060 0.90224 0.93824 0.92400 0.92633 0.91921 0.91530 0.92714 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.71 2.56 -69.09 -0.18 6.53 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.96 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.71 -14.65 4.64 -54.94 -0.25 -14.91 16 13 C 0.52 10.15 4.75 -10.99 -0.05 10.10 16 14 O -0.56 -13.12 14.62 5.56 0.08 -13.04 16 15 C -0.11 -1.67 3.09 -90.39 -0.28 -1.95 16 16 H 0.09 1.28 7.71 -51.92 -0.40 0.88 16 17 C 0.05 0.67 6.98 -2.10 -0.01 0.65 16 18 N -0.67 -8.12 7.62 -109.54 -0.84 -8.95 16 19 C 0.04 0.54 6.56 -2.18 -0.01 0.53 16 20 C -0.05 -0.68 1.03 -153.13 -0.16 -0.83 16 21 C -0.13 -1.50 8.24 37.16 0.31 -1.20 16 22 C -0.15 -2.28 7.28 37.15 0.27 -2.01 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.39 7.08 8.54 -40.82 -0.35 6.73 16 28 H 0.06 1.04 6.88 -51.93 -0.36 0.69 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.33 3.47 8.92 -39.29 -0.35 3.12 16 31 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 32 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.16 6.98 -51.93 -0.36 0.80 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.12 7.19 -51.93 -0.37 0.75 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -29.70 301.42 -7.24 -36.94 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.22 Total: 8.31 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.17 Total: -4.20 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.46 Total: -48.20 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.70 -7.24 -36.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711390111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.704 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds