Wall clock time and date at job start Mon Mar 30 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46452 * 2 1 4 4 C 1.50698 * 109.46992 * 119.99491 * 2 1 3 5 5 H 1.08009 * 119.99432 * 120.00217 * 4 2 1 6 6 C 1.37878 * 120.00470 * 299.99955 * 4 2 1 7 7 N 1.31514 * 119.99882 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47256 * 90.00188 * 8 6 4 10 10 H 1.48500 * 109.46918 * 210.00215 * 8 6 4 11 11 H 1.48508 * 109.46946 * 329.99903 * 8 6 4 12 12 N 1.46495 * 109.47126 * 239.99892 * 2 1 3 13 13 C 1.34778 * 120.00222 * 84.99471 * 12 2 1 14 14 O 1.21277 * 119.99821 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00278 * 180.02562 * 13 12 2 16 16 H 1.09009 * 110.28722 * 331.00882 * 15 13 12 17 17 C 1.54380 * 110.32754 * 208.87893 * 15 13 12 18 18 N 1.48714 * 104.51816 * 217.32014 * 17 15 13 19 19 C 1.48558 * 104.28903 * 39.36144 * 18 17 15 20 20 C 1.54264 * 110.32484 * 93.13082 * 15 13 12 21 21 C 1.52996 * 110.32446 * 237.79397 * 20 15 13 22 22 C 1.52994 * 110.32232 * 0.02562 * 20 15 13 23 23 H 1.09006 * 109.47414 * 299.99885 * 1 2 3 24 24 H 1.08999 * 109.47085 * 60.00388 * 1 2 3 25 25 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00323 * 180.02562 * 7 6 4 27 27 H 0.97006 * 120.00145 * 264.99941 * 12 2 1 28 28 H 1.08996 * 110.40954 * 336.03162 * 17 15 13 29 29 H 1.09000 * 110.40853 * 98.46850 * 17 15 13 30 30 H 1.00898 * 111.01634 * 158.96242 * 18 17 15 31 31 H 1.09001 * 110.41298 * 201.79180 * 19 18 17 32 32 H 1.09001 * 110.41021 * 79.34867 * 19 18 17 33 33 H 1.09000 * 109.47323 * 59.99757 * 21 20 15 34 34 H 1.09002 * 109.47469 * 179.97438 * 21 20 15 35 35 H 1.08999 * 109.47266 * 300.00165 * 21 20 15 36 36 H 1.09007 * 109.47323 * 60.37695 * 22 20 15 37 37 H 1.08995 * 109.47387 * 180.37643 * 22 20 15 38 38 H 1.09002 * 109.47371 * 300.38406 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5438 4.4119 10 1 1.3444 -0.9487 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4116 15 6 2.6487 -0.7289 -3.5877 16 1 3.3135 -1.5462 -3.3076 17 6 3.3801 0.2622 -4.5185 18 7 3.0098 -0.1733 -5.8914 19 6 1.5766 -0.5491 -5.7828 20 6 1.4638 -1.2629 -4.4187 21 6 1.5819 -2.7775 -4.6002 22 6 0.1381 -0.9089 -3.7421 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1615 3.4844 27 1 2.2491 -1.6318 -1.1526 28 1 3.0347 1.2798 -4.3367 29 1 4.4583 0.1942 -4.3741 30 1 3.1379 0.5755 -6.5554 31 1 1.2989 -1.2264 -6.5905 32 1 0.9479 0.3412 -5.7991 33 1 1.5784 -3.2618 -3.6237 34 1 0.7386 -3.1399 -5.1880 35 1 2.5126 -3.0100 -5.1176 36 1 0.0491 0.1745 -3.6616 37 1 -0.6885 -1.2981 -4.3366 38 1 0.1090 -1.3508 -2.7461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711390111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:33 Heat of formation + Delta-G solvation = -71.650658 kcal Electronic energy + Delta-G solvation = -18255.807718 eV Core-core repulsion = 15517.479454 eV Total energy + Delta-G solvation = -2738.328264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55255 -38.98146 -36.66209 -34.48403 -33.96228 -31.57985 -29.98059 -28.28261 -27.33420 -26.23901 -24.11363 -22.28872 -21.30914 -20.15439 -18.59730 -17.69103 -17.38364 -16.85373 -16.31800 -15.84809 -15.40018 -14.98297 -14.75763 -14.44444 -14.31141 -13.79159 -13.73196 -13.47105 -13.02557 -12.97153 -12.89324 -12.79194 -12.52348 -12.44718 -12.26798 -12.14134 -11.86954 -11.67030 -11.52438 -11.12001 -10.67887 -10.52330 -9.74155 -9.59880 -8.18438 -6.36104 1.44404 1.44797 1.55656 1.80663 2.34158 2.59183 3.11897 3.31474 3.52010 3.65675 3.88621 4.19820 4.23489 4.32705 4.37500 4.68499 4.72048 4.74065 4.75473 4.87315 4.90910 4.93013 5.03109 5.08216 5.11146 5.19627 5.28705 5.42674 5.43810 5.61043 5.64653 5.69452 5.90778 6.09703 6.35203 6.72150 6.97778 7.31782 7.56600 8.87838 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.005897 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.604740 B = 4747.041555 C = 4768.555087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.703 5.703 13 C 0.515 3.485 14 O -0.601 6.601 15 C -0.105 4.105 16 H 0.114 0.886 17 C 0.048 3.952 18 N -0.655 5.655 19 C 0.046 3.954 20 C -0.049 4.049 21 C -0.128 4.128 22 C -0.149 4.149 23 H 0.064 0.936 24 H 0.011 0.989 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.347 0.653 31 H 0.106 0.894 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -7.872 -14.462 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.351 5.351 13 C 0.302 3.698 14 O -0.483 6.483 15 C -0.127 4.127 16 H 0.132 0.868 17 C -0.082 4.082 18 N -0.284 5.284 19 C -0.084 4.084 20 C -0.050 4.050 21 C -0.185 4.185 22 C -0.206 4.206 23 H 0.083 0.917 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.163 0.837 31 H 0.124 0.876 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.974 -7.621 -14.333 16.353 hybrid contribution -0.311 0.826 1.334 1.600 sum 1.664 -6.795 -12.999 14.762 Atomic orbital electron populations 1.21859 0.98292 0.99305 0.99370 1.18301 0.91094 0.91722 0.82035 0.98716 1.21559 1.32526 1.13555 0.90848 0.90893 1.25811 0.94844 0.95592 1.02369 1.70056 1.37009 1.24026 1.24597 0.85337 0.77753 0.79221 0.77980 1.20380 1.20953 1.18307 1.46318 1.65112 1.14024 1.09675 1.20906 0.76899 0.86768 0.85220 1.90607 1.53498 1.18480 1.85742 1.22263 0.99043 0.99204 0.92177 0.86837 1.22809 1.00430 0.96226 0.88706 1.63766 1.17722 1.41308 1.05564 1.23085 0.89265 0.98983 0.97031 1.21204 0.92305 0.97825 0.93677 1.21816 1.03184 0.91146 1.02371 1.22031 0.97493 1.00378 1.00715 0.91730 0.97019 0.94143 0.92570 0.76245 0.94570 0.88896 0.83696 0.87624 0.94873 0.92374 0.90863 0.91008 0.94934 0.90242 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 9.26 71.98 0.67 -5.94 16 2 C 0.27 14.22 2.56 44.25 0.11 14.34 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.33 16 4 C -0.55 -29.08 8.73 25.60 0.22 -28.85 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.09 11.32 21.45 0.24 -52.84 16 8 Si 0.97 42.08 29.54 68.60 2.03 44.10 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 12 N -0.70 -29.36 4.64 -446.12 -2.07 -31.43 16 13 C 0.51 20.59 4.75 87.66 0.42 21.01 16 14 O -0.60 -29.59 14.62 -3.02 -0.04 -29.63 16 15 C -0.10 -3.04 3.09 -10.64 -0.03 -3.08 16 16 H 0.11 2.84 7.71 -2.38 -0.02 2.82 16 17 C 0.05 1.32 6.98 86.42 0.60 1.93 16 18 N -0.65 -14.36 7.62 -500.49 -3.82 -18.18 16 19 C 0.05 1.00 6.56 86.45 0.57 1.56 16 20 C -0.05 -1.20 1.03 -51.29 -0.05 -1.25 16 21 C -0.13 -2.40 8.24 71.98 0.59 -1.81 16 22 C -0.15 -4.31 7.28 71.98 0.52 -3.79 16 23 H 0.06 3.62 6.07 -2.38 -0.01 3.61 16 24 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.40 14.31 8.54 -92.70 -0.79 13.52 16 28 H 0.04 1.20 6.88 -2.39 -0.02 1.19 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.35 6.42 8.92 -89.70 -0.80 5.62 16 31 H 0.11 1.81 7.86 -2.39 -0.02 1.80 16 32 H 0.03 0.80 7.82 -2.39 -0.02 0.78 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.03 1.15 6.98 -2.38 -0.02 1.13 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.64 7.19 -2.39 -0.02 1.62 16 Total: -1.00 -65.96 301.42 -0.13 -66.09 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.54 Total: 26.58 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 4.07 Total: -4.69 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -5.64 Total: -102.45 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.04 Total: -29.63 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -65.96 -0.13 -66.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711390111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.564 kcal (2) G-P(sol) polarization free energy of solvation -65.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds