Wall clock time and date at job start Mon Mar 30 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47118 * 2 1 4 4 C 1.50697 * 109.47032 * 239.99461 * 2 1 3 5 5 H 1.08004 * 120.00006 * 239.99627 * 4 2 1 6 6 C 1.37873 * 120.00002 * 60.00939 * 4 2 1 7 7 N 1.31516 * 119.99906 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47222 * 89.99359 * 8 6 4 10 10 H 1.48500 * 109.47156 * 209.99243 * 8 6 4 11 11 H 1.48498 * 109.47017 * 329.99872 * 8 6 4 12 12 N 1.46500 * 109.46969 * 119.99589 * 2 1 3 13 13 C 1.34780 * 120.00190 * 275.00161 * 12 2 1 14 14 O 1.21284 * 119.99762 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99982 * 179.72117 * 13 12 2 16 16 H 1.08998 * 110.28816 * 29.63087 * 15 13 12 17 17 C 1.54388 * 110.32089 * 151.86374 * 15 13 12 18 18 N 1.48558 * 104.59127 * 95.04883 * 17 15 13 19 19 C 1.48550 * 104.22791 * 39.48194 * 18 17 15 20 20 C 1.54262 * 110.32921 * 267.49961 * 15 13 12 21 21 C 1.53007 * 110.31950 * 0.02562 * 20 15 13 22 22 C 1.53000 * 110.32102 * 122.20659 * 20 15 13 23 23 H 1.09002 * 109.47341 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47407 * 300.00715 * 1 2 3 25 25 H 1.09001 * 109.46836 * 59.99978 * 1 2 3 26 26 H 0.97002 * 119.99815 * 180.02562 * 7 6 4 27 27 H 0.96996 * 120.00178 * 95.00016 * 12 2 1 28 28 H 1.09005 * 110.40937 * 213.82396 * 17 15 13 29 29 H 1.08999 * 110.41065 * 336.26592 * 17 15 13 30 30 H 1.00902 * 111.00347 * 159.04435 * 18 17 15 31 31 H 1.09000 * 110.41198 * 201.74064 * 19 18 17 32 32 H 1.09000 * 110.51232 * 79.34616 * 19 18 17 33 33 H 1.09006 * 109.46852 * 59.42155 * 21 20 15 34 34 H 1.09001 * 109.47029 * 179.41814 * 21 20 15 35 35 H 1.08995 * 109.46990 * 299.42370 * 21 20 15 36 36 H 1.08992 * 109.47049 * 60.00918 * 22 20 15 37 37 H 1.08999 * 109.46557 * 180.02562 * 22 20 15 38 38 H 1.08994 * 109.47394 * 300.00013 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4873 -0.1405 -5.1119 11 1 3.6308 -1.7569 -3.7117 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1585 2.4117 15 6 2.6433 -0.7300 3.5892 16 1 3.3143 -1.5428 3.3115 17 6 3.3602 0.2625 4.5297 18 7 2.3146 0.6826 5.4978 19 6 1.5540 -0.5625 5.7769 20 6 1.4551 -1.2728 4.4098 21 6 0.1325 -0.9244 3.7239 22 6 1.5797 -2.7873 4.5873 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7085 1.1608 -3.4844 27 1 2.2490 -1.6317 1.1528 28 1 4.1821 -0.2312 5.0483 29 1 3.7257 1.1221 3.9680 30 1 2.7292 1.0499 6.3412 31 1 0.5596 -0.3241 6.1543 32 1 2.0914 -1.1863 6.4913 33 1 0.1151 -1.3611 2.7253 34 1 -0.6963 -1.3229 4.3092 35 1 0.0365 0.1586 3.6485 36 1 2.5077 -3.0165 5.1110 37 1 0.7340 -3.1558 5.1679 38 1 1.5859 -3.2685 3.6094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711390112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:35 Heat of formation + Delta-G solvation = -46.238594 kcal Electronic energy + Delta-G solvation = -18301.848685 eV Core-core repulsion = 15564.622371 eV Total energy + Delta-G solvation = -2737.226314 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.11864 -37.43337 -34.63891 -33.14773 -32.19912 -29.98502 -28.32062 -27.23199 -25.21213 -25.13079 -22.62229 -20.74004 -19.54177 -18.68812 -16.99310 -16.35890 -15.72653 -15.11920 -14.75627 -14.18987 -14.02864 -13.62689 -13.26387 -13.00425 -12.58658 -12.26505 -12.25972 -12.07167 -11.65918 -11.48373 -11.31978 -11.04997 -10.90974 -10.78686 -10.73162 -10.58398 -10.41029 -10.25946 -10.18516 -8.98675 -8.75992 -8.49509 -8.42514 -7.77271 -6.08419 -4.17525 3.25887 3.32733 3.34910 3.51510 4.14310 4.33877 4.42899 4.60605 4.78777 5.04895 5.23264 5.25752 5.37081 5.41612 5.59633 5.61010 5.71858 5.77747 5.88296 6.02482 6.07483 6.13038 6.29120 6.33421 6.65423 6.84969 6.89742 7.04581 7.22544 7.39138 7.56151 7.64583 7.75977 7.98895 8.21206 8.77435 8.86055 9.27888 9.51122 10.97417 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040322 B = 0.006038 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.250182 B = 4635.824341 C = 4714.347946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.714 5.714 13 C 0.516 3.484 14 O -0.541 6.541 15 C -0.112 4.112 16 H 0.088 0.912 17 C 0.057 3.943 18 N -0.652 5.652 19 C 0.045 3.955 20 C -0.052 4.052 21 C -0.147 4.147 22 C -0.140 4.140 23 H 0.024 0.976 24 H 0.015 0.985 25 H 0.088 0.912 26 H 0.264 0.736 27 H 0.385 0.615 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.331 0.669 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -6.719 14.162 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.362 5.362 13 C 0.301 3.699 14 O -0.418 6.418 15 C -0.134 4.134 16 H 0.106 0.894 17 C -0.073 4.073 18 N -0.280 5.280 19 C -0.085 4.085 20 C -0.053 4.053 21 C -0.204 4.204 22 C -0.197 4.197 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.217 0.783 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.563 -5.398 13.536 14.656 hybrid contribution 1.066 -1.543 -0.352 1.908 sum 2.629 -6.940 13.184 15.129 Atomic orbital electron populations 1.22063 0.98609 0.98884 1.00837 1.18675 0.90915 0.93893 0.80099 0.93545 1.21241 1.32292 1.13106 0.90457 0.92210 1.24889 0.94890 0.94949 0.99019 1.69911 1.35970 1.22458 1.23774 0.86470 0.79136 0.79276 0.82333 1.20591 1.21093 1.19913 1.46570 1.65685 1.13291 1.10611 1.19971 0.78550 0.87409 0.84017 1.90671 1.50503 1.15928 1.84721 1.22275 0.97662 0.98338 0.95139 0.89385 1.22741 0.92453 0.98216 0.93887 1.63662 1.23301 1.26339 1.14677 1.23044 0.99295 0.90622 0.95502 1.21155 0.95330 0.94635 0.94161 1.22028 0.94496 1.03563 1.00336 1.21924 1.01437 0.94202 1.02168 0.95680 0.96577 0.89353 0.92639 0.78314 0.94299 0.89175 0.85368 0.90213 0.94435 0.91677 0.93110 0.90706 0.92780 0.92317 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.27 6.85 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.22 11.32 55.43 0.63 -24.60 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.71 -15.00 4.60 -54.94 -0.25 -15.25 16 13 C 0.52 10.39 4.68 -10.99 -0.05 10.34 16 14 O -0.54 -13.17 15.01 5.55 0.08 -13.09 16 15 C -0.11 -1.69 3.09 -90.39 -0.28 -1.97 16 16 H 0.09 1.15 7.71 -51.93 -0.40 0.75 16 17 C 0.06 0.80 6.67 -2.18 -0.01 0.79 16 18 N -0.65 -8.91 7.62 -109.66 -0.84 -9.75 16 19 C 0.04 0.54 6.56 -2.19 -0.01 0.53 16 20 C -0.05 -0.69 1.03 -153.12 -0.16 -0.84 16 21 C -0.15 -2.28 7.26 37.16 0.27 -2.01 16 22 C -0.14 -1.46 8.25 37.16 0.31 -1.16 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.39 7.10 8.54 -40.82 -0.35 6.75 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 1.48 7.46 -51.93 -0.39 1.09 16 30 H 0.33 3.62 8.92 -39.29 -0.35 3.27 16 31 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 32 H 0.04 0.38 7.83 -51.93 -0.41 -0.03 16 33 H 0.06 1.10 7.15 -51.93 -0.37 0.73 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.41 7.06 -51.93 -0.37 1.05 16 36 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -30.92 301.97 -7.26 -38.19 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.25 Total: 8.00 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.17 Total: -3.85 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.46 Total: -49.60 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.92 -7.26 -38.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711390112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.052 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds