Wall clock time and date at job start Mon Mar 30 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47118 * 2 1 4 4 C 1.50697 * 109.47032 * 239.99461 * 2 1 3 5 5 H 1.08004 * 120.00006 * 239.99627 * 4 2 1 6 6 C 1.37873 * 120.00002 * 60.00939 * 4 2 1 7 7 N 1.31516 * 119.99906 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47222 * 89.99359 * 8 6 4 10 10 H 1.48500 * 109.47156 * 209.99243 * 8 6 4 11 11 H 1.48498 * 109.47017 * 329.99872 * 8 6 4 12 12 N 1.46500 * 109.46969 * 119.99589 * 2 1 3 13 13 C 1.34780 * 120.00190 * 275.00161 * 12 2 1 14 14 O 1.21284 * 119.99762 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99982 * 179.72117 * 13 12 2 16 16 H 1.08998 * 110.28816 * 29.63087 * 15 13 12 17 17 C 1.54388 * 110.32089 * 151.86374 * 15 13 12 18 18 N 1.48558 * 104.59127 * 95.04883 * 17 15 13 19 19 C 1.48550 * 104.22791 * 39.48194 * 18 17 15 20 20 C 1.54262 * 110.32921 * 267.49961 * 15 13 12 21 21 C 1.53007 * 110.31950 * 0.02562 * 20 15 13 22 22 C 1.53000 * 110.32102 * 122.20659 * 20 15 13 23 23 H 1.09002 * 109.47341 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47407 * 300.00715 * 1 2 3 25 25 H 1.09001 * 109.46836 * 59.99978 * 1 2 3 26 26 H 0.97002 * 119.99815 * 180.02562 * 7 6 4 27 27 H 0.96996 * 120.00178 * 95.00016 * 12 2 1 28 28 H 1.09005 * 110.40937 * 213.82396 * 17 15 13 29 29 H 1.08999 * 110.41065 * 336.26592 * 17 15 13 30 30 H 1.00902 * 111.00347 * 159.04435 * 18 17 15 31 31 H 1.09000 * 110.41198 * 201.74064 * 19 18 17 32 32 H 1.09000 * 110.51232 * 79.34616 * 19 18 17 33 33 H 1.09006 * 109.46852 * 59.42155 * 21 20 15 34 34 H 1.09001 * 109.47029 * 179.41814 * 21 20 15 35 35 H 1.08995 * 109.46990 * 299.42370 * 21 20 15 36 36 H 1.08992 * 109.47049 * 60.00918 * 22 20 15 37 37 H 1.08999 * 109.46557 * 180.02562 * 22 20 15 38 38 H 1.08994 * 109.47394 * 300.00013 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4873 -0.1405 -5.1119 11 1 3.6308 -1.7569 -3.7117 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1585 2.4117 15 6 2.6433 -0.7300 3.5892 16 1 3.3143 -1.5428 3.3115 17 6 3.3602 0.2625 4.5297 18 7 2.3146 0.6826 5.4978 19 6 1.5540 -0.5625 5.7769 20 6 1.4551 -1.2728 4.4098 21 6 0.1325 -0.9244 3.7239 22 6 1.5797 -2.7873 4.5873 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7085 1.1608 -3.4844 27 1 2.2490 -1.6317 1.1528 28 1 4.1821 -0.2312 5.0483 29 1 3.7257 1.1221 3.9680 30 1 2.7292 1.0499 6.3412 31 1 0.5596 -0.3241 6.1543 32 1 2.0914 -1.1863 6.4913 33 1 0.1151 -1.3611 2.7253 34 1 -0.6963 -1.3229 4.3092 35 1 0.0365 0.1586 3.6485 36 1 2.5077 -3.0165 5.1110 37 1 0.7340 -3.1558 5.1679 38 1 1.5859 -3.2685 3.6094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711390112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:35 Heat of formation + Delta-G solvation = -69.840655 kcal Electronic energy + Delta-G solvation = -18302.872147 eV Core-core repulsion = 15564.622371 eV Total energy + Delta-G solvation = -2738.249776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47430 -38.90074 -36.58143 -34.45306 -33.92385 -31.53005 -29.94896 -28.28389 -27.31476 -26.17672 -24.11870 -22.29034 -21.18278 -20.06685 -18.62897 -17.70322 -17.31957 -16.92269 -16.22153 -15.78903 -15.37037 -14.87772 -14.55737 -14.43575 -14.14094 -13.82101 -13.62870 -13.32913 -13.14919 -12.95144 -12.80010 -12.76019 -12.55236 -12.40834 -12.26565 -12.13488 -11.88604 -11.65270 -11.55714 -11.08784 -10.63580 -10.39223 -9.64514 -9.38127 -8.16820 -6.34754 1.44326 1.45404 1.56038 1.93830 2.36627 2.68883 3.13176 3.35116 3.56466 3.65511 3.95098 4.18167 4.30114 4.36691 4.46471 4.64737 4.73333 4.77265 4.78624 4.83204 4.93147 4.95908 5.02172 5.11044 5.11821 5.24845 5.34623 5.42519 5.45875 5.64382 5.72027 5.85926 5.95688 6.12388 6.53526 6.74361 7.07590 7.33971 7.68484 8.89474 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040322 B = 0.006038 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.250182 B = 4635.824341 C = 4714.347946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.274 3.726 3 H -0.008 1.008 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.709 5.709 13 C 0.513 3.487 14 O -0.590 6.590 15 C -0.107 4.107 16 H 0.117 0.883 17 C 0.059 3.941 18 N -0.679 5.679 19 C 0.049 3.951 20 C -0.050 4.050 21 C -0.142 4.142 22 C -0.134 4.134 23 H 0.038 0.962 24 H 0.008 0.992 25 H 0.063 0.937 26 H 0.265 0.735 27 H 0.401 0.599 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.346 0.654 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -9.612 15.431 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.170 3.830 3 H 0.010 0.990 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.358 5.358 13 C 0.301 3.699 14 O -0.471 6.471 15 C -0.129 4.129 16 H 0.135 0.865 17 C -0.071 4.071 18 N -0.309 5.309 19 C -0.080 4.080 20 C -0.051 4.051 21 C -0.200 4.200 22 C -0.191 4.191 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.235 0.765 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.688 -8.330 14.840 17.229 hybrid contribution 0.684 -0.561 -0.706 1.132 sum 3.373 -8.891 14.134 17.035 Atomic orbital electron populations 1.21850 0.98524 0.99128 0.99212 1.18242 0.90913 0.91642 0.82177 0.98967 1.21568 1.32497 1.13482 0.90879 0.90882 1.25837 0.94909 0.95571 1.02430 1.70072 1.37127 1.24030 1.24547 0.85323 0.79003 0.78006 0.77862 1.19574 1.21281 1.18736 1.46331 1.65791 1.13907 1.09788 1.20922 0.77087 0.86927 0.84974 1.90647 1.52419 1.18450 1.85543 1.22350 0.99111 0.98851 0.92619 0.86500 1.22688 0.93524 0.97026 0.93847 1.63570 1.23814 1.27867 1.15670 1.23064 0.99560 0.90174 0.95186 1.21228 0.92686 0.97038 0.94122 1.21951 0.97307 1.00539 1.00177 1.21894 1.03315 0.91204 1.02722 0.94266 0.97251 0.91818 0.92607 0.76464 0.90435 0.92478 0.83700 0.90324 0.91101 0.93555 0.90838 0.94965 0.90520 0.90851 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 14.63 2.56 44.24 0.11 14.74 16 3 H -0.01 -0.48 7.58 -2.39 -0.02 -0.50 16 4 C -0.55 -29.44 8.73 25.60 0.22 -29.22 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.97 42.47 29.54 68.60 2.03 44.49 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 12 N -0.71 -30.19 4.60 -446.11 -2.05 -32.24 16 13 C 0.51 21.07 4.68 87.65 0.41 21.48 16 14 O -0.59 -30.31 15.01 -3.04 -0.05 -30.36 16 15 C -0.11 -3.05 3.09 -10.64 -0.03 -3.08 16 16 H 0.12 2.64 7.71 -2.39 -0.02 2.62 16 17 C 0.06 1.56 6.67 86.45 0.58 2.14 16 18 N -0.68 -17.51 7.62 -500.86 -3.82 -21.33 16 19 C 0.05 1.03 6.56 86.45 0.57 1.60 16 20 C -0.05 -1.19 1.03 -51.28 -0.05 -1.24 16 21 C -0.14 -4.36 7.26 71.98 0.52 -3.83 16 22 C -0.13 -2.22 8.25 71.98 0.59 -1.63 16 23 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 3.66 6.07 -2.39 -0.01 3.64 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.40 14.41 8.54 -92.71 -0.79 13.62 16 28 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 1.89 7.46 -2.39 -0.02 1.88 16 30 H 0.35 6.89 8.92 -89.69 -0.80 6.09 16 31 H 0.08 1.68 7.86 -2.39 -0.02 1.66 16 32 H 0.07 1.06 7.83 -2.39 -0.02 1.04 16 33 H 0.05 1.56 7.15 -2.38 -0.02 1.54 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.03 1.24 7.06 -2.39 -0.02 1.23 16 36 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.71 301.97 -0.15 -70.86 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.54 Total: 26.25 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.04 Total: -3.98 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -5.63 Total: -107.26 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.71 -0.15 -70.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711390112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.017 kcal (2) G-P(sol) polarization free energy of solvation -70.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds