Wall clock time and date at job start Mon Mar 30 2020 03:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 C 1.50697 * 109.47103 * 120.00203 * 2 1 3 5 5 H 1.08007 * 120.00161 * 119.99773 * 4 2 1 6 6 C 1.37877 * 119.99845 * 300.00311 * 4 2 1 7 7 N 1.31521 * 119.99776 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00162 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47022 * 90.00094 * 8 6 4 10 10 H 1.48500 * 109.46900 * 210.00469 * 8 6 4 11 11 H 1.48495 * 109.47036 * 330.00124 * 8 6 4 12 12 N 1.46505 * 109.46988 * 240.00307 * 2 1 3 13 13 C 1.34774 * 120.00012 * 85.00176 * 12 2 1 14 14 O 1.21276 * 120.00108 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99640 * 179.97438 * 13 12 2 16 16 C 1.53004 * 109.46621 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.43542 * 54.29950 * 16 15 13 18 18 C 1.54266 * 110.48805 * 291.75670 * 16 15 13 19 19 C 1.53869 * 106.60031 * 217.58544 * 18 16 15 20 20 C 1.54266 * 106.59800 * 359.97438 * 19 18 16 21 21 H 1.09006 * 110.48581 * 264.93644 * 20 19 18 22 22 N 1.46898 * 110.48595 * 142.42744 * 20 19 18 23 23 C 1.54894 * 110.48128 * 176.84102 * 16 15 13 24 24 H 1.09001 * 109.47227 * 299.99843 * 1 2 3 25 25 H 1.09005 * 109.46721 * 60.00119 * 1 2 3 26 26 H 1.09007 * 109.46889 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99741 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99527 * 264.99676 * 12 2 1 29 29 H 1.08992 * 109.47161 * 60.00514 * 15 13 12 30 30 H 1.08994 * 109.47201 * 299.99662 * 15 13 12 31 31 H 1.09001 * 110.03084 * 336.86727 * 18 16 15 32 32 H 1.08995 * 110.03255 * 98.29193 * 18 16 15 33 33 H 1.08999 * 110.04012 * 119.28327 * 19 18 16 34 34 H 1.09006 * 110.02998 * 240.67078 * 19 18 16 35 35 H 1.00894 * 111.00490 * 61.45478 * 22 20 19 36 36 H 1.00903 * 111.00065 * 185.41165 * 22 20 19 37 37 H 1.08996 * 110.75388 * 275.05927 * 23 16 15 38 38 H 1.08993 * 110.76071 * 38.44153 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6992 10 1 0.9771 1.9952 3.9071 11 1 0.8491 2.1772 1.4924 12 7 2.0183 -0.6906 -1.1963 13 6 2.1471 -0.0182 -2.3572 14 8 1.8583 1.1584 -2.4117 15 6 2.6499 -0.7285 -3.5875 16 6 2.7019 0.2549 -4.7585 17 1 3.2900 1.1331 -4.4922 18 6 1.2767 0.6673 -5.1810 19 6 1.2888 0.7820 -6.7153 20 6 2.7212 0.4359 -7.1718 21 1 3.3121 1.3436 -7.2952 22 7 2.6905 -0.3303 -8.4247 23 6 3.2908 -0.4309 -6.0164 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9039 -0.5276 4.4375 28 1 2.2490 -1.6317 -1.1527 29 1 1.9777 -1.5506 -3.8326 30 1 3.6492 -1.1202 -3.3979 31 1 0.5602 -0.0926 -4.8690 32 1 1.0190 1.6286 -4.7366 33 1 0.5783 0.0778 -7.1481 34 1 1.0363 1.7990 -7.0157 35 1 2.2660 0.2061 -9.1664 36 1 3.6163 -0.6365 -8.6841 37 1 4.3800 -0.3929 -6.0028 38 1 2.9399 -1.4597 -6.0955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711431663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:35 Heat of formation + Delta-G solvation = -57.670336 kcal Electronic energy + Delta-G solvation = -17428.611959 eV Core-core repulsion = 14690.889928 eV Total energy + Delta-G solvation = -2737.722032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.48142 -38.01574 -35.00056 -33.39849 -32.35854 -30.65699 -29.45170 -27.71867 -25.22663 -24.80557 -21.39761 -20.22717 -19.79516 -19.34264 -17.17480 -16.38426 -15.81869 -15.54281 -15.38854 -15.05203 -14.44561 -14.27075 -13.51438 -13.29579 -12.99606 -12.71827 -12.18208 -12.06926 -11.90388 -11.47416 -11.19953 -11.10774 -11.05119 -10.94596 -10.77450 -10.55696 -10.32013 -10.16752 -9.67576 -9.20444 -9.01034 -8.92703 -8.73612 -8.08810 -6.19532 -4.21701 3.24389 3.34120 3.36398 3.41409 3.98625 4.31819 4.33341 4.54052 4.60086 5.02008 5.15362 5.20208 5.34295 5.39682 5.45244 5.62269 5.67060 5.78094 5.84395 5.87950 6.05381 6.12844 6.15965 6.34075 6.39000 6.44198 6.55608 6.59702 6.89103 6.97119 7.18980 7.23454 7.35040 7.56316 8.19536 8.58721 8.78438 9.02520 9.42017 10.92760 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057795 B = 0.004663 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.351437 B = 6002.846707 C = 6271.870200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.887 3.113 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.705 5.705 13 C 0.502 3.498 14 O -0.556 6.556 15 C -0.135 4.135 16 C -0.072 4.072 17 H 0.081 0.919 18 C -0.111 4.111 19 C -0.120 4.120 20 C 0.082 3.918 21 H 0.039 0.961 22 N -0.845 5.845 23 C -0.114 4.114 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.394 0.606 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.338 0.662 36 H 0.339 0.661 37 H 0.062 0.938 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 0.358 -19.739 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.353 5.353 13 C 0.287 3.713 14 O -0.435 6.435 15 C -0.175 4.175 16 C -0.091 4.091 17 H 0.099 0.901 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.029 4.029 21 H 0.057 0.943 22 N -0.375 5.375 23 C -0.152 4.152 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.228 0.772 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.131 0.690 -19.140 19.153 hybrid contribution 0.122 0.987 -0.009 0.994 sum 0.253 1.677 -19.149 19.224 Atomic orbital electron populations 1.22441 0.99424 1.00751 0.99207 1.19069 0.90059 0.94652 0.83006 0.93495 1.21069 1.33152 1.14374 0.88624 0.90251 1.24844 0.95522 0.96723 0.95539 1.69877 1.45006 1.40167 0.98029 0.86858 0.80510 0.83622 0.77379 1.20331 1.22193 1.18691 1.46220 1.65337 1.13806 1.09941 1.20565 0.78359 0.87568 0.84808 1.90626 1.51383 1.16227 1.85291 1.21750 1.02821 0.99300 0.93637 1.21648 0.97140 0.97751 0.92586 0.90080 1.22091 0.96499 1.02557 0.93708 1.22210 0.96132 1.00842 0.96582 1.22283 0.96640 0.94218 0.89781 0.94308 1.58790 1.26979 1.45830 1.05859 1.22675 0.99388 0.99786 0.93332 0.93571 0.94591 0.92905 0.92323 0.77250 0.89312 0.89339 0.92044 0.90845 0.91023 0.92485 0.84939 0.84883 0.91936 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.16 0.33 -3.30 16 2 C 0.24 5.70 2.15 -69.08 -0.15 5.55 16 3 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 4 C -0.53 -14.61 9.31 -34.44 -0.32 -14.93 16 5 H 0.08 2.28 7.98 -52.48 -0.42 1.86 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 12 N -0.70 -14.05 5.07 -54.93 -0.28 -14.33 16 13 C 0.50 9.31 7.59 -10.98 -0.08 9.22 16 14 O -0.56 -12.23 14.55 5.56 0.08 -12.15 16 15 C -0.13 -1.79 5.09 -27.88 -0.14 -1.94 16 16 C -0.07 -0.91 2.45 -88.96 -0.22 -1.13 16 17 H 0.08 1.15 7.96 -51.93 -0.41 0.74 16 18 C -0.11 -1.45 5.48 -25.62 -0.14 -1.59 16 19 C -0.12 -1.29 6.53 -25.62 -0.17 -1.46 16 20 C 0.08 0.80 3.99 -65.85 -0.26 0.54 16 21 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 22 N -0.85 -7.00 9.26 -3.09 -0.03 -7.02 16 23 C -0.11 -1.17 6.02 -24.53 -0.15 -1.32 16 24 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 29 H 0.09 1.04 8.01 -51.93 -0.42 0.62 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 32 H 0.07 1.11 7.67 -51.93 -0.40 0.71 16 33 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.34 2.33 9.07 -39.29 -0.36 1.97 16 36 H 0.34 2.31 9.06 -39.29 -0.36 1.96 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -31.38 299.95 -6.65 -38.03 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.18 Total: 7.23 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.40 Total: -8.26 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.47 Total: -47.27 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.38 -6.65 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711431663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.639 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds