Wall clock time and date at job start Mon Mar 30 2020 03:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 C 1.50697 * 109.47103 * 120.00203 * 2 1 3 5 5 H 1.08007 * 120.00161 * 119.99773 * 4 2 1 6 6 C 1.37877 * 119.99845 * 300.00311 * 4 2 1 7 7 N 1.31521 * 119.99776 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00162 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47022 * 90.00094 * 8 6 4 10 10 H 1.48500 * 109.46900 * 210.00469 * 8 6 4 11 11 H 1.48495 * 109.47036 * 330.00124 * 8 6 4 12 12 N 1.46505 * 109.46988 * 240.00307 * 2 1 3 13 13 C 1.34774 * 120.00012 * 85.00176 * 12 2 1 14 14 O 1.21276 * 120.00108 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99640 * 179.97438 * 13 12 2 16 16 C 1.53004 * 109.46621 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.43542 * 54.29950 * 16 15 13 18 18 C 1.54266 * 110.48805 * 291.75670 * 16 15 13 19 19 C 1.53869 * 106.60031 * 217.58544 * 18 16 15 20 20 C 1.54266 * 106.59800 * 359.97438 * 19 18 16 21 21 H 1.09006 * 110.48581 * 264.93644 * 20 19 18 22 22 N 1.46898 * 110.48595 * 142.42744 * 20 19 18 23 23 C 1.54894 * 110.48128 * 176.84102 * 16 15 13 24 24 H 1.09001 * 109.47227 * 299.99843 * 1 2 3 25 25 H 1.09005 * 109.46721 * 60.00119 * 1 2 3 26 26 H 1.09007 * 109.46889 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99741 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99527 * 264.99676 * 12 2 1 29 29 H 1.08992 * 109.47161 * 60.00514 * 15 13 12 30 30 H 1.08994 * 109.47201 * 299.99662 * 15 13 12 31 31 H 1.09001 * 110.03084 * 336.86727 * 18 16 15 32 32 H 1.08995 * 110.03255 * 98.29193 * 18 16 15 33 33 H 1.08999 * 110.04012 * 119.28327 * 19 18 16 34 34 H 1.09006 * 110.02998 * 240.67078 * 19 18 16 35 35 H 1.00894 * 111.00490 * 61.45478 * 22 20 19 36 36 H 1.00903 * 111.00065 * 185.41165 * 22 20 19 37 37 H 1.08996 * 110.75388 * 275.05927 * 23 16 15 38 38 H 1.08993 * 110.76071 * 38.44153 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6992 10 1 0.9771 1.9952 3.9071 11 1 0.8491 2.1772 1.4924 12 7 2.0183 -0.6906 -1.1963 13 6 2.1471 -0.0182 -2.3572 14 8 1.8583 1.1584 -2.4117 15 6 2.6499 -0.7285 -3.5875 16 6 2.7019 0.2549 -4.7585 17 1 3.2900 1.1331 -4.4922 18 6 1.2767 0.6673 -5.1810 19 6 1.2888 0.7820 -6.7153 20 6 2.7212 0.4359 -7.1718 21 1 3.3121 1.3436 -7.2952 22 7 2.6905 -0.3303 -8.4247 23 6 3.2908 -0.4309 -6.0164 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9039 -0.5276 4.4375 28 1 2.2490 -1.6317 -1.1527 29 1 1.9777 -1.5506 -3.8326 30 1 3.6492 -1.1202 -3.3979 31 1 0.5602 -0.0926 -4.8690 32 1 1.0190 1.6286 -4.7366 33 1 0.5783 0.0778 -7.1481 34 1 1.0363 1.7990 -7.0157 35 1 2.2660 0.2061 -9.1664 36 1 3.6163 -0.6365 -8.6841 37 1 4.3800 -0.3929 -6.0028 38 1 2.9399 -1.4597 -6.0955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711431663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:35 Heat of formation + Delta-G solvation = -81.715858 kcal Electronic energy + Delta-G solvation = -17429.654651 eV Core-core repulsion = 14690.889928 eV Total energy + Delta-G solvation = -2738.764724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85819 -39.11990 -36.79457 -34.39463 -34.29546 -32.12840 -30.75554 -28.65159 -27.22981 -25.91867 -23.08319 -21.30587 -21.05752 -20.58572 -18.98902 -17.73459 -17.32016 -17.10907 -16.17155 -16.06050 -15.94952 -15.65868 -14.98848 -14.88474 -14.31836 -14.16252 -14.07021 -13.67506 -13.33370 -12.84719 -12.80785 -12.48641 -12.14714 -11.98246 -11.93553 -11.82542 -11.63966 -11.53813 -11.33426 -11.27525 -10.87639 -10.56591 -9.81496 -9.58153 -8.38911 -6.44486 1.26300 1.34404 1.44105 1.86115 2.25441 2.54018 2.97363 3.56804 3.64383 3.66908 4.06359 4.16552 4.30576 4.40484 4.45769 4.55951 4.56511 4.66135 4.69961 4.78786 4.85115 4.90310 5.00304 5.03975 5.11032 5.20291 5.29422 5.33563 5.42636 5.44593 5.55132 5.70032 6.14935 6.32502 6.57620 6.66215 6.94584 7.19651 7.53576 8.76441 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057795 B = 0.004663 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.351437 B = 6002.846707 C = 6271.870200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.241 3.759 3 H 0.020 0.980 4 C -0.533 4.533 5 H 0.057 0.943 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.940 3.060 9 H -0.260 1.260 10 H -0.292 1.292 11 H -0.265 1.265 12 N -0.706 5.706 13 C 0.498 3.502 14 O -0.592 6.592 15 C -0.123 4.123 16 C -0.073 4.073 17 H 0.062 0.938 18 C -0.111 4.111 19 C -0.115 4.115 20 C 0.085 3.915 21 H 0.040 0.960 22 N -0.847 5.847 23 C -0.104 4.104 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.270 0.730 28 H 0.407 0.593 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.347 0.653 36 H 0.349 0.651 37 H 0.076 0.924 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 -0.070 -21.688 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.135 3.865 3 H 0.038 0.962 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.189 1.189 12 N -0.355 5.355 13 C 0.286 3.714 14 O -0.474 6.474 15 C -0.163 4.163 16 C -0.092 4.092 17 H 0.080 0.920 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.026 4.026 21 H 0.058 0.942 22 N -0.379 5.379 23 C -0.142 4.142 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.242 0.758 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.094 0.906 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.083 0.235 -21.124 21.125 hybrid contribution 0.242 1.098 0.560 1.256 sum 0.159 1.333 -20.563 20.607 Atomic orbital electron populations 1.22330 0.97985 1.01573 0.99278 1.18721 0.91107 0.93102 0.83529 0.96247 1.21293 1.32279 1.13560 0.90005 0.92495 1.25566 0.96863 0.99335 0.95379 1.69980 1.46725 1.41953 0.98647 0.85989 0.79801 0.80360 0.77114 1.18536 1.21895 1.18944 1.46102 1.65716 1.14397 1.09320 1.21490 0.77131 0.87235 0.85530 1.90615 1.52759 1.18115 1.85895 1.21776 1.04320 0.99412 0.90791 1.21632 0.96766 0.97268 0.93550 0.91969 1.22054 0.96721 1.00840 0.95336 1.22153 0.97154 1.01198 0.94775 1.22185 0.95625 0.94394 0.90414 0.94195 1.58738 1.27857 1.45649 1.05612 1.22601 1.00102 0.99669 0.91785 0.94251 0.93689 0.91688 0.92050 0.75796 0.86860 0.86965 0.92506 0.93666 0.90827 0.92178 0.83965 0.83745 0.90563 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.78 8.96 71.98 0.65 -6.14 16 2 C 0.24 11.56 2.15 44.24 0.10 11.66 16 3 H 0.02 1.05 6.63 -2.39 -0.02 1.04 16 4 C -0.53 -29.35 9.31 25.60 0.24 -29.11 16 5 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 6 C 0.03 1.61 5.45 84.65 0.46 2.07 16 7 N -0.93 -56.35 13.96 21.45 0.30 -56.05 16 8 Si 0.94 45.32 24.37 68.60 1.67 46.99 16 9 H -0.26 -11.75 6.87 99.48 0.68 -11.07 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.26 -12.77 6.53 99.48 0.65 -12.12 16 12 N -0.71 -27.55 5.07 -446.09 -2.26 -29.81 16 13 C 0.50 18.00 7.59 87.66 0.67 18.67 16 14 O -0.59 -26.09 14.55 -3.02 -0.04 -26.13 16 15 C -0.12 -3.00 5.09 29.85 0.15 -2.84 16 16 C -0.07 -1.73 2.45 -9.72 -0.02 -1.75 16 17 H 0.06 1.72 7.96 -2.39 -0.02 1.70 16 18 C -0.11 -2.82 5.48 31.32 0.17 -2.65 16 19 C -0.11 -2.29 6.53 31.32 0.20 -2.09 16 20 C 0.09 1.46 3.99 46.12 0.18 1.64 16 21 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 22 N -0.85 -11.60 9.26 -163.69 -1.52 -13.12 16 23 C -0.10 -1.83 6.02 32.02 0.19 -1.63 16 24 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 25 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 27 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.41 13.76 8.54 -92.71 -0.79 12.97 16 29 H 0.11 2.26 8.01 -2.39 -0.02 2.24 16 30 H 0.11 2.25 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.46 7.75 -2.39 -0.02 1.44 16 32 H 0.04 1.38 7.67 -2.39 -0.02 1.36 16 33 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16 34 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.35 3.85 9.07 -89.70 -0.81 3.04 16 36 H 0.35 3.69 9.06 -89.69 -0.81 2.88 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 Total: -1.00 -67.54 299.95 -0.29 -67.83 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -1.42 Total: 22.47 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 2.99 Total: -12.18 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -3.48 Total: -98.98 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.04 Total: -26.13 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.67 Total: 46.99 kcal Total: -67.54 -0.29 -67.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711431663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.887 kcal (2) G-P(sol) polarization free energy of solvation -67.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds