Wall clock time and date at job start Mon Mar 30 2020 03:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47420 * 60.00025 * 8 6 4 10 10 H 1.48503 * 109.47178 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47539 * 299.99718 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21287 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47204 * 180.02562 * 15 13 12 17 17 N 1.46896 * 109.47057 * 180.02562 * 16 15 13 18 18 C 1.46906 * 110.99832 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47024 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.50000 * 243.62471 * 19 18 17 21 21 C 1.53000 * 117.49871 * 175.00029 * 19 18 17 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 26 26 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 27 27 H 1.08999 * 109.47169 * 300.00043 * 15 13 12 28 28 H 1.08999 * 109.47104 * 60.00393 * 15 13 12 29 29 H 1.09008 * 109.46871 * 299.99745 * 16 15 13 30 30 H 1.08995 * 109.47484 * 59.99653 * 16 15 13 31 31 H 1.00896 * 111.00166 * 56.04177 * 17 16 15 32 32 H 1.08998 * 109.47450 * 299.99694 * 18 17 16 33 33 H 1.09004 * 109.47324 * 60.00067 * 18 17 16 34 34 H 1.09000 * 115.55024 * 29.33024 * 19 18 17 35 35 H 1.09004 * 117.49740 * 359.97438 * 20 19 18 36 36 H 1.08995 * 117.50092 * 145.01965 * 20 19 18 37 37 H 1.08995 * 117.49967 * 214.98228 * 21 19 18 38 38 H 1.08999 * 117.49783 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4200 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6498 -0.7285 -3.5875 16 6 2.7017 0.2548 -4.7586 17 7 3.1913 -0.4377 -5.9580 18 6 3.2539 0.4774 -7.1055 19 6 3.7676 -0.2781 -8.3329 20 6 5.1023 0.1708 -8.9312 21 6 3.7943 0.4738 -9.6651 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7095 1.1617 3.4844 26 1 2.2490 -1.6317 -1.1527 27 1 3.6491 -1.1202 -3.3980 28 1 1.9776 -1.5508 -3.8326 29 1 1.7024 0.6469 -4.9483 30 1 3.3740 1.0768 -4.5133 31 1 2.6210 -1.2430 -6.1687 32 1 2.2584 0.8710 -7.3111 33 1 3.9302 1.3011 -6.8770 34 1 3.5361 -1.3428 -8.3604 35 1 5.6142 1.0047 -8.4508 36 1 5.7492 -0.5986 -9.3525 37 1 3.5808 -0.0964 -10.5691 38 1 3.4463 1.5067 -9.6671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717235243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:26 Heat of formation + Delta-G solvation = -28.815877 kcal Electronic energy + Delta-G solvation = -16600.794037 eV Core-core repulsion = 13864.323229 eV Total energy + Delta-G solvation = -2736.470808 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97340 -38.02024 -35.57544 -34.65929 -32.36957 -30.86294 -28.68922 -25.76478 -25.22767 -22.67936 -22.54111 -21.08419 -20.44919 -19.31321 -17.12958 -16.17064 -16.02074 -15.58707 -15.14827 -14.86940 -14.43508 -14.22492 -13.55796 -13.19650 -12.92619 -12.57883 -12.35192 -11.80269 -11.69976 -11.55815 -11.38664 -11.12769 -11.03905 -10.91755 -10.69704 -10.53972 -10.31462 -10.23965 -10.22142 -9.04746 -8.97678 -8.53903 -8.48193 -7.87932 -6.11091 -4.20449 3.26394 3.31510 3.32715 3.44802 3.50301 3.87090 4.29258 4.47801 4.58797 4.70400 4.88819 5.12100 5.16547 5.20951 5.29102 5.38525 5.44218 5.51397 5.61672 5.66352 5.86005 5.87774 6.00835 6.09395 6.14629 6.83659 6.92691 6.97588 7.16669 7.28986 7.48997 7.58187 7.71212 7.93239 8.16599 8.69999 8.79783 9.16820 9.47323 10.94928 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.063588 B = 0.003380 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.231167 B = 8282.564073 C = 8493.517005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.710 5.710 13 C 0.501 3.499 14 O -0.560 6.560 15 C -0.139 4.139 16 C 0.076 3.924 17 N -0.690 5.690 18 C 0.089 3.911 19 C -0.148 4.148 20 C -0.175 4.175 21 C -0.184 4.184 22 H 0.090 0.910 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.265 0.735 26 H 0.389 0.611 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.338 0.662 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 -4.295 -18.316 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.286 3.714 14 O -0.440 6.440 15 C -0.180 4.180 16 C -0.054 4.054 17 N -0.321 5.321 18 C -0.040 4.040 19 C -0.166 4.166 20 C -0.212 4.212 21 C -0.222 4.222 22 H 0.108 0.892 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.221 0.779 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.497 -3.224 -17.996 18.828 hybrid contribution -0.539 -0.895 0.688 1.251 sum 3.958 -4.119 -17.308 18.226 Atomic orbital electron populations 1.22074 0.98560 0.99051 1.00846 1.18723 0.90968 0.93999 0.80136 0.93438 1.21199 1.32452 1.13223 0.90387 0.92116 1.24899 0.94823 0.94971 0.99078 1.69899 1.35876 1.22438 1.23967 0.86496 0.79175 0.79568 0.81780 1.20166 1.21136 1.20163 1.46529 1.65042 1.13563 1.10609 1.20403 0.78600 0.87528 0.84910 1.90651 1.51652 1.16277 1.85379 1.21597 1.03335 0.99302 0.93762 1.21639 0.99250 0.96236 0.88229 1.60462 1.57802 1.09943 1.03851 1.21506 0.99302 0.94798 0.88427 1.22253 1.01394 0.99724 0.93243 1.22999 0.90736 1.03471 1.03958 1.22983 1.02187 1.01457 0.95543 0.89184 0.96725 0.95511 0.92532 0.77894 0.88619 0.89763 0.94396 0.90185 0.84472 0.94797 0.90778 0.87624 0.88714 0.88954 0.88870 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.71 -14.89 5.07 -54.93 -0.28 -15.17 16 13 C 0.50 9.97 7.79 -10.99 -0.09 9.89 16 14 O -0.56 -13.46 15.64 5.55 0.09 -13.38 16 15 C -0.14 -1.97 5.96 -27.88 -0.17 -2.13 16 16 C 0.08 1.04 4.97 -3.83 -0.02 1.02 16 17 N -0.69 -7.75 6.50 -113.78 -0.74 -8.49 16 18 C 0.09 0.91 5.97 -3.82 -0.02 0.89 16 19 C -0.15 -1.29 5.95 -90.62 -0.54 -1.83 16 20 C -0.17 -1.42 10.18 -26.73 -0.27 -1.69 16 21 C -0.18 -1.40 10.25 -26.73 -0.27 -1.67 16 22 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.39 7.00 8.54 -40.82 -0.35 6.65 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.56 8.10 -51.92 -0.42 0.14 16 30 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.34 3.27 8.72 -39.29 -0.34 2.93 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 34 H 0.11 0.88 8.13 -51.93 -0.42 0.46 16 35 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -30.53 318.64 -8.54 -39.07 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.41 Total: 7.15 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.61 Total: -5.19 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.39 Total: -48.20 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.53 -8.54 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717235243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.252 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds