Wall clock time and date at job start Mon Mar 30 2020 03:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47420 * 60.00025 * 8 6 4 10 10 H 1.48503 * 109.47178 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47539 * 299.99718 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21287 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47204 * 180.02562 * 15 13 12 17 17 N 1.46896 * 109.47057 * 180.02562 * 16 15 13 18 18 C 1.46906 * 110.99832 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47024 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.50000 * 243.62471 * 19 18 17 21 21 C 1.53000 * 117.49871 * 175.00029 * 19 18 17 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 26 26 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 27 27 H 1.08999 * 109.47169 * 300.00043 * 15 13 12 28 28 H 1.08999 * 109.47104 * 60.00393 * 15 13 12 29 29 H 1.09008 * 109.46871 * 299.99745 * 16 15 13 30 30 H 1.08995 * 109.47484 * 59.99653 * 16 15 13 31 31 H 1.00896 * 111.00166 * 56.04177 * 17 16 15 32 32 H 1.08998 * 109.47450 * 299.99694 * 18 17 16 33 33 H 1.09004 * 109.47324 * 60.00067 * 18 17 16 34 34 H 1.09000 * 115.55024 * 29.33024 * 19 18 17 35 35 H 1.09004 * 117.49740 * 359.97438 * 20 19 18 36 36 H 1.08995 * 117.50092 * 145.01965 * 20 19 18 37 37 H 1.08995 * 117.49967 * 214.98228 * 21 19 18 38 38 H 1.08999 * 117.49783 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4200 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6498 -0.7285 -3.5875 16 6 2.7017 0.2548 -4.7586 17 7 3.1913 -0.4377 -5.9580 18 6 3.2539 0.4774 -7.1055 19 6 3.7676 -0.2781 -8.3329 20 6 5.1023 0.1708 -8.9312 21 6 3.7943 0.4738 -9.6651 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7095 1.1617 3.4844 26 1 2.2490 -1.6317 -1.1527 27 1 3.6491 -1.1202 -3.3980 28 1 1.9776 -1.5508 -3.8326 29 1 1.7024 0.6469 -4.9483 30 1 3.3740 1.0768 -4.5133 31 1 2.6210 -1.2430 -6.1687 32 1 2.2584 0.8710 -7.3111 33 1 3.9302 1.3011 -6.8770 34 1 3.5361 -1.3428 -8.3604 35 1 5.6142 1.0047 -8.4508 36 1 5.7492 -0.5986 -9.3525 37 1 3.5808 -0.0964 -10.5691 38 1 3.4463 1.5067 -9.6671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717235243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:26 Heat of formation + Delta-G solvation = -50.220062 kcal Electronic energy + Delta-G solvation = -16601.722192 eV Core-core repulsion = 13864.323229 eV Total energy + Delta-G solvation = -2737.398963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60836 -38.79814 -36.90725 -36.22035 -34.31490 -32.18939 -30.44425 -27.35699 -26.75240 -23.95047 -23.18928 -22.52330 -21.50389 -20.97874 -18.88158 -17.55078 -17.28308 -16.96766 -16.64111 -16.04423 -15.92443 -15.45725 -14.85197 -14.42698 -14.35868 -14.07556 -13.80616 -13.60956 -13.00402 -12.88965 -12.78228 -12.59053 -12.35701 -12.27771 -12.19439 -12.13345 -12.10577 -11.20542 -11.11865 -10.93262 -10.71707 -10.55987 -9.73557 -9.42107 -8.17614 -6.35484 1.45145 1.47477 1.55258 1.85229 2.34374 2.55469 2.90646 3.12528 3.33289 3.83226 3.95494 4.05364 4.13220 4.19037 4.32072 4.44945 4.64627 4.66939 4.72829 4.77523 4.82284 4.91508 4.97425 5.00379 5.06765 5.09691 5.28801 5.33762 5.43868 5.61917 5.69671 5.91233 5.95389 6.10235 6.46835 6.72935 6.99029 7.32693 7.59262 8.88626 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.063588 B = 0.003380 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.231167 B = 8282.564073 C = 8493.517005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.706 5.706 13 C 0.496 3.504 14 O -0.607 6.607 15 C -0.121 4.121 16 C 0.083 3.917 17 N -0.684 5.684 18 C 0.088 3.912 19 C -0.154 4.154 20 C -0.179 4.179 21 C -0.177 4.177 22 H 0.065 0.935 23 H 0.011 0.989 24 H 0.041 0.959 25 H 0.265 0.735 26 H 0.407 0.593 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.351 0.649 32 H 0.032 0.968 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -6.652 -19.185 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.355 5.355 13 C 0.283 3.717 14 O -0.490 6.490 15 C -0.161 4.161 16 C -0.046 4.046 17 N -0.316 5.316 18 C -0.041 4.041 19 C -0.173 4.173 20 C -0.216 4.216 21 C -0.214 4.214 22 H 0.084 0.916 23 H 0.030 0.970 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.242 0.758 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.170 0.830 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.298 -5.629 -18.901 20.421 hybrid contribution -0.781 -0.108 0.896 1.193 sum 4.517 -5.737 -18.005 19.429 Atomic orbital electron populations 1.21894 0.98360 0.99488 0.99485 1.18323 0.91111 0.91864 0.82215 0.98668 1.21546 1.32630 1.13624 0.90837 0.90736 1.25840 0.94869 0.95603 1.02452 1.70056 1.37041 1.23972 1.24676 0.85368 0.78639 0.78720 0.77432 1.19566 1.21228 1.18733 1.46293 1.65127 1.14325 1.09740 1.21417 0.77257 0.87086 0.85953 1.90634 1.53475 1.18694 1.86165 1.21513 1.04795 0.99339 0.90438 1.21441 0.98003 0.95829 0.89372 1.60410 1.57657 1.10200 1.03283 1.21513 0.99116 0.94696 0.88751 1.22211 1.02027 1.00027 0.93011 1.23067 0.90877 1.03616 1.04020 1.23059 1.01430 1.01540 0.95416 0.91597 0.96997 0.93953 0.92553 0.75809 0.86561 0.86344 0.95812 0.92383 0.83027 0.94939 0.91812 0.86843 0.89225 0.87997 0.87521 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.19 16 2 C 0.27 14.12 2.56 44.24 0.11 14.23 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.31 11.32 21.45 0.24 -53.07 16 8 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 12 N -0.71 -29.16 5.07 -446.09 -2.26 -31.42 16 13 C 0.50 19.54 7.79 87.66 0.68 20.22 16 14 O -0.61 -30.03 15.64 -3.05 -0.05 -30.07 16 15 C -0.12 -3.14 5.96 29.85 0.18 -2.96 16 16 C 0.08 2.22 4.97 86.30 0.43 2.65 16 17 N -0.68 -14.08 6.50 -513.87 -3.34 -17.42 16 18 C 0.09 1.71 5.97 86.30 0.51 2.23 16 19 C -0.15 -2.41 5.95 -10.79 -0.06 -2.47 16 20 C -0.18 -2.61 10.18 30.60 0.31 -2.30 16 21 C -0.18 -2.36 10.25 30.60 0.31 -2.04 16 22 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.27 14.58 8.31 -92.71 -0.77 13.80 16 26 H 0.41 13.82 8.54 -92.71 -0.79 13.03 16 27 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.02 0.70 8.10 -2.38 -0.02 0.68 16 30 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.35 5.80 8.72 -89.70 -0.78 5.02 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 1.36 7.87 -2.39 -0.02 1.34 16 34 H 0.11 1.60 8.13 -2.39 -0.02 1.58 16 35 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.27 318.64 -0.09 -67.37 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.53 Total: 25.01 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 3.82 Total: -4.52 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -5.36 Total: -101.91 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.07 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.27 -0.09 -67.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717235243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.148 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds