Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47163 * 239.99882 * 2 1 3 5 5 H 1.08005 * 119.99734 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00116 * 60.00349 * 4 2 1 7 7 N 1.31516 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47179 * 90.00277 * 8 6 4 10 10 H 1.48507 * 109.47135 * 209.99685 * 8 6 4 11 11 H 1.48494 * 109.47644 * 330.00010 * 8 6 4 12 12 N 1.46906 * 109.46958 * 120.00119 * 2 1 3 13 13 C 1.47009 * 111.00252 * 176.04546 * 12 2 1 14 14 C 1.53099 * 109.32382 * 177.16518 * 13 12 2 15 15 O 1.43109 * 109.20050 * 57.36146 * 14 13 12 16 16 C 1.42419 * 113.85245 * 302.31233 * 15 14 13 17 17 C 1.53822 * 110.24134 * 294.93246 * 16 15 14 18 18 C 1.54499 * 104.90900 * 241.04668 * 17 16 15 19 19 N 1.48603 * 104.60623 * 23.76908 * 18 17 16 20 20 C 1.48659 * 104.27639 * 320.77391 * 19 18 17 21 21 C 1.47102 * 110.99906 * 52.47526 * 12 2 1 22 22 H 1.09002 * 109.46781 * 59.99952 * 1 2 3 23 23 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47598 * 300.00150 * 1 2 3 25 25 H 0.96998 * 120.00296 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.49494 * 297.11996 * 13 12 2 27 27 H 1.09002 * 109.49549 * 57.20973 * 13 12 2 28 28 H 1.08991 * 109.51937 * 177.28329 * 14 13 12 29 29 H 1.09007 * 109.51468 * 297.39091 * 14 13 12 30 30 H 1.08998 * 110.34923 * 359.90066 * 17 16 15 31 31 H 1.08992 * 110.35352 * 122.19125 * 17 16 15 32 32 H 1.08994 * 110.40664 * 264.98367 * 18 17 16 33 33 H 1.09003 * 110.50657 * 142.59757 * 18 17 16 34 34 H 1.00895 * 110.99408 * 201.18847 * 19 18 17 35 35 H 1.08996 * 110.43027 * 280.35853 * 20 19 18 36 36 H 1.09005 * 110.42556 * 157.87624 * 20 19 18 37 37 H 1.08999 * 109.49281 * 301.37082 * 21 12 2 38 38 H 1.08997 * 109.49022 * 61.44695 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6926 1.1995 13 6 3.4861 -0.7947 1.1872 14 6 3.9587 -1.4575 2.4838 15 8 3.3370 -2.7403 2.6104 16 6 1.9136 -2.6939 2.6001 17 6 1.3967 -1.9406 3.8377 18 6 0.5414 -2.9743 4.6038 19 7 1.0661 -4.2936 4.1651 20 6 1.3363 -4.1167 2.7141 21 6 1.4067 -2.0237 1.3267 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7082 1.1609 -3.4844 26 1 3.8017 -1.3966 0.3349 27 1 3.9196 0.2024 1.1093 28 1 5.0415 -1.5787 2.4572 29 1 3.6830 -0.8329 3.3335 30 1 2.2313 -1.6074 4.4545 31 1 0.7843 -1.0910 3.5359 32 1 -0.5094 -2.8739 4.3326 33 1 0.6688 -2.8532 5.6795 34 1 0.3861 -5.0227 4.3200 35 1 0.4121 -4.1993 2.1421 36 1 2.0644 -4.8514 2.3703 37 1 0.3226 -1.9217 1.3762 38 1 1.6761 -2.6322 0.4635 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717494176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = -29.070934 kcal Electronic energy + Delta-G solvation = -18730.697319 eV Core-core repulsion = 15994.215451 eV Total energy + Delta-G solvation = -2736.481868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95107 -36.87982 -35.51942 -32.55735 -30.77490 -29.64949 -29.03652 -26.29688 -25.46321 -24.27257 -21.89539 -21.47219 -19.74953 -18.59989 -16.58796 -16.51910 -16.09994 -15.13295 -14.61877 -14.49927 -14.14696 -13.69182 -13.36276 -13.13815 -13.01575 -12.49212 -12.01583 -11.76598 -11.44722 -11.24070 -11.17782 -11.10181 -10.89023 -10.71410 -10.51463 -10.38003 -10.19476 -9.86220 -9.60279 -9.33073 -8.90823 -8.51804 -8.43636 -7.22771 -6.03961 -4.17093 3.23678 3.31185 3.34603 4.12858 4.35747 4.37404 4.73870 4.99670 5.13559 5.21236 5.34991 5.39514 5.64600 5.69138 5.80276 5.84489 5.87983 5.99111 6.08605 6.14222 6.19562 6.37518 6.53910 6.63102 6.74818 6.81151 6.84663 6.94980 7.07406 7.33485 7.50743 7.64850 7.73892 7.87680 8.06309 8.24750 8.34689 8.91812 9.50936 10.96166 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.007284 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.589412 B = 3843.285425 C = 3916.102993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.206 3.794 3 H 0.041 0.959 4 C -0.544 4.544 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.532 5.532 13 C 0.026 3.974 14 C 0.062 3.938 15 O -0.372 6.372 16 C 0.119 3.881 17 C -0.137 4.137 18 C 0.035 3.965 19 N -0.664 5.664 20 C 0.048 3.952 21 C 0.040 3.960 22 H 0.085 0.915 23 H 0.027 0.973 24 H 0.014 0.986 25 H 0.261 0.739 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.332 0.668 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -5.655 10.390 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.100 3.900 3 H 0.059 0.941 4 C -0.583 4.583 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.256 5.256 13 C -0.103 4.103 14 C -0.015 4.015 15 O -0.291 6.291 16 C 0.079 3.921 17 C -0.175 4.175 18 C -0.095 4.095 19 N -0.292 5.292 20 C -0.082 4.082 21 C -0.089 4.089 22 H 0.104 0.896 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.411 -5.340 10.931 12.173 hybrid contribution -0.511 -0.608 -2.192 2.332 sum -0.100 -5.949 8.739 10.572 Atomic orbital electron populations 1.21859 0.97842 0.99064 1.00442 1.19298 0.92185 0.94203 0.84284 0.94090 1.21708 1.31932 1.12939 0.91685 0.92501 1.24903 0.94793 0.94805 0.98901 1.69874 1.36406 1.22718 1.23521 0.86663 0.79327 0.79516 0.82930 1.20701 1.21120 1.19976 1.62800 1.04432 1.16278 1.42120 1.22538 0.90623 1.00716 0.96451 1.22718 0.96664 0.84730 0.97371 1.87866 1.18124 1.29104 1.94022 1.21860 0.81705 0.93908 0.94658 1.22797 1.00168 0.98166 0.96407 1.22952 0.96605 0.89769 1.00132 1.63735 1.45243 1.05574 1.14638 1.22812 0.99656 0.96627 0.89069 1.22506 0.99648 0.91575 0.95198 0.89625 0.95445 0.96648 0.92856 0.93200 0.90805 0.89530 0.93111 0.90785 0.89713 0.94266 0.90506 0.85297 0.92740 0.89271 0.90399 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.48 37.16 0.32 -2.85 16 2 C 0.21 5.07 2.50 -68.86 -0.17 4.89 16 3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.54 -14.46 7.12 -34.44 -0.25 -14.70 16 5 H 0.06 1.54 5.79 -52.48 -0.30 1.24 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 8 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.17 4.51 -227.98 -1.03 -12.19 16 13 C 0.03 0.50 5.22 -3.71 -0.02 0.48 16 14 C 0.06 1.04 6.70 37.21 0.25 1.29 16 15 O -0.37 -6.81 10.21 -35.23 -0.36 -7.17 16 16 C 0.12 2.02 1.03 -89.91 -0.09 1.93 16 17 C -0.14 -2.08 5.69 -25.52 -0.15 -2.22 16 18 C 0.03 0.44 7.48 -2.09 -0.02 0.43 16 19 N -0.66 -8.77 7.63 -109.72 -0.84 -9.60 16 20 C 0.05 0.71 6.74 -2.35 -0.02 0.69 16 21 C 0.04 0.78 3.19 -3.94 -0.01 0.76 16 22 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 23 H 0.03 0.62 6.29 -51.93 -0.33 0.29 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.05 1.09 6.35 -51.93 -0.33 0.76 16 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.81 6.77 -51.93 -0.35 0.46 16 30 H 0.07 1.14 6.80 -51.93 -0.35 0.78 16 31 H 0.08 1.35 7.62 -51.93 -0.40 0.95 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.33 3.53 8.92 -39.29 -0.35 3.18 16 35 H 0.05 0.75 7.84 -51.93 -0.41 0.34 16 36 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 37 H 0.08 1.50 6.12 -51.93 -0.32 1.19 16 38 H 0.05 0.99 7.00 -51.93 -0.36 0.63 16 LS Contribution 284.80 15.07 4.29 4.29 Total: -1.00 -28.28 284.80 -8.48 -36.76 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.91 Total: 3.53 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.25 Total: -7.55 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -1.24 Total: -45.95 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.36 Total: -7.17 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.28 -8.48 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717494176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.693 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds