Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47163 * 239.99882 * 2 1 3 5 5 H 1.08005 * 119.99734 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00116 * 60.00349 * 4 2 1 7 7 N 1.31516 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47179 * 90.00277 * 8 6 4 10 10 H 1.48507 * 109.47135 * 209.99685 * 8 6 4 11 11 H 1.48494 * 109.47644 * 330.00010 * 8 6 4 12 12 N 1.46906 * 109.46958 * 120.00119 * 2 1 3 13 13 C 1.47009 * 111.00252 * 176.04546 * 12 2 1 14 14 C 1.53099 * 109.32382 * 177.16518 * 13 12 2 15 15 O 1.43109 * 109.20050 * 57.36146 * 14 13 12 16 16 C 1.42419 * 113.85245 * 302.31233 * 15 14 13 17 17 C 1.53822 * 110.24134 * 294.93246 * 16 15 14 18 18 C 1.54499 * 104.90900 * 241.04668 * 17 16 15 19 19 N 1.48603 * 104.60623 * 23.76908 * 18 17 16 20 20 C 1.48659 * 104.27639 * 320.77391 * 19 18 17 21 21 C 1.47102 * 110.99906 * 52.47526 * 12 2 1 22 22 H 1.09002 * 109.46781 * 59.99952 * 1 2 3 23 23 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47598 * 300.00150 * 1 2 3 25 25 H 0.96998 * 120.00296 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.49494 * 297.11996 * 13 12 2 27 27 H 1.09002 * 109.49549 * 57.20973 * 13 12 2 28 28 H 1.08991 * 109.51937 * 177.28329 * 14 13 12 29 29 H 1.09007 * 109.51468 * 297.39091 * 14 13 12 30 30 H 1.08998 * 110.34923 * 359.90066 * 17 16 15 31 31 H 1.08992 * 110.35352 * 122.19125 * 17 16 15 32 32 H 1.08994 * 110.40664 * 264.98367 * 18 17 16 33 33 H 1.09003 * 110.50657 * 142.59757 * 18 17 16 34 34 H 1.00895 * 110.99408 * 201.18847 * 19 18 17 35 35 H 1.08996 * 110.43027 * 280.35853 * 20 19 18 36 36 H 1.09005 * 110.42556 * 157.87624 * 20 19 18 37 37 H 1.08999 * 109.49281 * 301.37082 * 21 12 2 38 38 H 1.08997 * 109.49022 * 61.44695 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6926 1.1995 13 6 3.4861 -0.7947 1.1872 14 6 3.9587 -1.4575 2.4838 15 8 3.3370 -2.7403 2.6104 16 6 1.9136 -2.6939 2.6001 17 6 1.3967 -1.9406 3.8377 18 6 0.5414 -2.9743 4.6038 19 7 1.0661 -4.2936 4.1651 20 6 1.3363 -4.1167 2.7141 21 6 1.4067 -2.0237 1.3267 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7082 1.1609 -3.4844 26 1 3.8017 -1.3966 0.3349 27 1 3.9196 0.2024 1.1093 28 1 5.0415 -1.5787 2.4572 29 1 3.6830 -0.8329 3.3335 30 1 2.2313 -1.6074 4.4545 31 1 0.7843 -1.0910 3.5359 32 1 -0.5094 -2.8739 4.3326 33 1 0.6688 -2.8532 5.6795 34 1 0.3861 -5.0227 4.3200 35 1 0.4121 -4.1993 2.1421 36 1 2.0644 -4.8514 2.3703 37 1 0.3226 -1.9217 1.3762 38 1 1.6761 -2.6322 0.4635 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717494176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = -50.650143 kcal Electronic energy + Delta-G solvation = -18731.633064 eV Core-core repulsion = 15994.215451 eV Total energy + Delta-G solvation = -2737.417613 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.35377 -38.32453 -37.04496 -34.52854 -32.15781 -31.37210 -30.27298 -27.78993 -27.43902 -25.90581 -23.33435 -22.67081 -21.52824 -20.09702 -18.39344 -17.81249 -17.58687 -16.84535 -16.26278 -15.95264 -15.45039 -15.32384 -14.98887 -14.69874 -14.30246 -14.20802 -13.49662 -13.17103 -13.06184 -12.98633 -12.72377 -12.66415 -12.50286 -12.26496 -12.19216 -12.07618 -11.87608 -11.66217 -11.28741 -11.12108 -10.53616 -10.38746 -9.53633 -9.05220 -8.09737 -6.31540 1.33590 1.36078 1.44780 2.36211 2.80529 3.10287 3.18480 3.34002 3.80691 3.82988 4.04988 4.21830 4.28137 4.34187 4.43431 4.55449 4.63398 4.68992 4.78511 4.80546 4.90203 4.96740 4.98105 5.05103 5.07044 5.14001 5.17568 5.28563 5.47869 5.63635 5.69881 5.91904 6.09713 6.29380 6.35805 6.44144 6.50928 6.86423 7.39502 8.86880 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.007284 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.589412 B = 3843.285425 C = 3916.102993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.209 3.791 3 H 0.010 0.990 4 C -0.551 4.551 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.911 5.911 8 Si 0.946 3.054 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.275 1.275 12 N -0.527 5.527 13 C 0.026 3.974 14 C 0.069 3.931 15 O -0.385 6.385 16 C 0.116 3.884 17 C -0.134 4.134 18 C 0.040 3.960 19 N -0.666 5.666 20 C 0.051 3.949 21 C 0.047 3.953 22 H 0.060 0.940 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.350 0.650 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -6.717 11.637 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 H 0.028 0.972 4 C -0.590 4.590 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.103 4.103 14 C -0.007 4.007 15 O -0.304 6.304 16 C 0.075 3.925 17 C -0.172 4.172 18 C -0.089 4.089 19 N -0.297 5.297 20 C -0.079 4.079 21 C -0.082 4.082 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.325 -6.417 12.195 13.784 hybrid contribution -0.473 -0.257 -2.557 2.613 sum -0.149 -6.674 9.638 11.724 Atomic orbital electron populations 1.21668 0.97114 0.99142 1.00020 1.19102 0.92723 0.92774 0.85177 0.97232 1.21874 1.31733 1.12621 0.92805 0.93573 1.25582 0.95074 0.95505 1.01490 1.69983 1.37170 1.23700 1.24130 0.85748 0.78700 0.78565 0.79789 1.20179 1.20561 1.20015 1.62736 1.05337 1.17143 1.39882 1.22585 0.89748 1.00566 0.97401 1.22760 0.97955 0.84253 0.95739 1.87861 1.18866 1.29785 1.93900 1.21956 0.81237 0.95404 0.93875 1.22732 1.00397 0.98417 0.95683 1.22960 0.96698 0.88515 1.00737 1.63694 1.46363 1.06396 1.13209 1.22742 0.99787 0.94895 0.90445 1.22489 0.99649 0.90262 0.95795 0.92078 0.94988 0.94919 0.92751 0.95938 0.90889 0.87029 0.91763 0.90813 0.90629 0.92955 0.88756 0.83375 0.91845 0.89823 0.90289 0.96560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.48 71.98 0.61 -5.17 16 2 C 0.21 10.49 2.50 44.17 0.11 10.60 16 3 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 4 C -0.55 -29.92 7.12 25.60 0.18 -29.74 16 5 H 0.05 2.57 5.79 -2.91 -0.02 2.55 16 6 C 0.02 1.29 5.30 84.65 0.45 1.74 16 7 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 8 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.53 -22.24 4.51 -875.21 -3.95 -26.19 16 13 C 0.03 1.02 5.22 86.32 0.45 1.47 16 14 C 0.07 2.23 6.70 72.02 0.48 2.71 16 15 O -0.39 -13.53 10.21 -148.98 -1.52 -15.05 16 16 C 0.12 3.75 1.03 -10.34 -0.01 3.74 16 17 C -0.13 -3.77 5.69 31.38 0.18 -3.59 16 18 C 0.04 0.89 7.48 86.48 0.65 1.54 16 19 N -0.67 -15.63 7.63 -501.05 -3.82 -19.45 16 20 C 0.05 1.41 6.74 86.29 0.58 1.99 16 21 C 0.05 1.83 3.19 86.12 0.27 2.10 16 22 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 23 H 0.03 1.45 6.29 -2.39 -0.02 1.43 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.02 1.01 6.35 -2.39 -0.02 0.99 16 27 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.06 1.91 6.77 -2.38 -0.02 1.89 16 30 H 0.07 2.08 6.80 -2.39 -0.02 2.06 16 31 H 0.08 2.26 7.62 -2.39 -0.02 2.24 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.35 6.29 8.92 -89.70 -0.80 5.49 16 35 H 0.06 1.62 7.84 -2.39 -0.02 1.60 16 36 H 0.08 2.41 8.07 -2.38 -0.02 2.39 16 37 H 0.08 3.00 6.12 -2.39 -0.01 2.99 16 38 H 0.02 0.72 7.00 -2.39 -0.02 0.70 16 Total: -1.00 -60.23 284.80 -2.81 -63.05 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.25 Total: 15.97 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 3.96 Total: -12.60 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -7.53 Total: -96.99 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.52 Total: -15.05 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -60.23 -2.81 -63.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717494176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.397 kcal (2) G-P(sol) polarization free energy of solvation -60.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds