Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 N 1.46895 * 109.47264 * 239.99375 * 2 1 3 13 13 C 1.47015 * 111.00177 * 306.05282 * 12 2 1 14 14 C 1.53092 * 109.35086 * 177.21814 * 13 12 2 15 15 O 1.43120 * 109.22036 * 57.29685 * 14 13 12 16 16 C 1.42430 * 113.78925 * 302.28911 * 15 14 13 17 17 C 1.54168 * 110.02503 * 178.83367 * 16 15 14 18 18 C 1.55033 * 102.81184 * 97.37791 * 17 16 15 19 19 N 1.48566 * 103.28837 * 37.04635 * 18 17 16 20 20 C 1.48015 * 105.83905 * 321.04411 * 19 18 17 21 21 C 1.47110 * 111.00253 * 182.49500 * 12 2 1 22 22 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 24 24 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.48810 * 297.17601 * 13 12 2 27 27 H 1.08997 * 109.49520 * 57.22834 * 13 12 2 28 28 H 1.09011 * 109.51445 * 177.21674 * 14 13 12 29 29 H 1.08999 * 109.51289 * 297.36948 * 14 13 12 30 30 H 1.09003 * 110.74784 * 215.71087 * 17 16 15 31 31 H 1.08998 * 110.74611 * 339.04640 * 17 16 15 32 32 H 1.08998 * 110.65240 * 278.59826 * 18 17 16 33 33 H 1.09001 * 110.79758 * 155.56904 * 18 17 16 34 34 H 1.00907 * 111.00027 * 81.56405 * 19 18 17 35 35 H 1.08998 * 109.97307 * 265.89727 * 20 19 18 36 36 H 1.08996 * 109.98069 * 144.61508 * 20 19 18 37 37 H 1.09000 * 109.49734 * 301.41828 * 21 12 2 38 38 H 1.09001 * 109.49801 * 61.52270 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 7 2.0197 -0.6926 -1.1993 13 6 1.4338 -2.0366 -1.3077 14 6 1.9141 -2.6963 -2.6030 15 8 3.3447 -2.7367 -2.6088 16 6 3.9561 -1.4568 -2.4806 17 6 5.4907 -1.6037 -2.4677 18 6 5.8769 -1.3068 -3.9395 19 7 4.9287 -0.2323 -4.3313 20 6 3.6353 -0.5867 -3.7048 21 6 3.4890 -0.7642 -1.2038 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.9118 -0.5216 4.4376 26 1 1.7462 -2.6394 -0.4550 27 1 0.3466 -1.9596 -1.3198 28 1 1.5210 -3.7114 -2.6622 29 1 1.5626 -2.1186 -3.4579 30 1 5.9428 -0.8745 -1.7953 31 1 5.7792 -2.6174 -2.1898 32 1 5.7338 -2.1912 -4.5604 33 1 6.9063 -0.9544 -4.0060 34 1 5.2508 0.6687 -4.0109 35 1 3.0215 -1.1474 -4.4097 36 1 3.1127 0.3173 -3.3925 37 1 3.9025 0.2435 -1.1642 38 1 3.8282 -1.3316 -0.3371 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717494178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = -22.907134 kcal Electronic energy + Delta-G solvation = -18740.621881 eV Core-core repulsion = 16004.407295 eV Total energy + Delta-G solvation = -2736.214586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10342 -37.09238 -35.62938 -32.50430 -30.94630 -30.22789 -28.92056 -26.97026 -25.13002 -23.93047 -22.70010 -21.56680 -19.62378 -18.74311 -16.73878 -16.47213 -16.26850 -15.65296 -14.74006 -14.56576 -14.19703 -13.85671 -13.48430 -13.04395 -12.92996 -12.86549 -12.20789 -12.00144 -11.75894 -11.46416 -11.34560 -11.28094 -11.06813 -10.78104 -10.75835 -10.40900 -10.00675 -9.90325 -9.66164 -9.45222 -9.15165 -8.65666 -8.43562 -7.31105 -6.18047 -4.19682 3.19858 3.30639 3.32806 4.02902 4.30835 4.37367 4.62346 4.99322 5.05742 5.14079 5.18979 5.48457 5.52015 5.67328 5.68992 5.74306 5.79373 5.95567 6.01352 6.05288 6.15464 6.25901 6.31814 6.33124 6.50885 6.52200 6.63204 6.71351 6.79466 6.93673 7.10066 7.40207 7.45831 7.62402 7.93905 7.96097 8.37104 8.83025 9.44521 10.94742 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.007435 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.682909 B = 3764.996313 C = 3888.118160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.174 3.826 3 H 0.040 0.960 4 C -0.547 4.547 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.890 3.110 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.266 1.266 12 N -0.525 5.525 13 C 0.018 3.982 14 C 0.062 3.938 15 O -0.375 6.375 16 C 0.094 3.906 17 C -0.146 4.146 18 C 0.045 3.955 19 N -0.676 5.676 20 C 0.030 3.970 21 C 0.043 3.957 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.264 0.736 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.335 0.665 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 0.143 -12.385 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.066 3.934 3 H 0.058 0.942 4 C -0.585 4.585 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.191 1.191 12 N -0.249 5.249 13 C -0.110 4.110 14 C -0.015 4.015 15 O -0.294 6.294 16 C 0.052 3.948 17 C -0.186 4.186 18 C -0.085 4.085 19 N -0.303 5.303 20 C -0.100 4.100 21 C -0.086 4.086 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.468 0.015 -13.314 13.541 hybrid contribution -0.461 0.664 2.227 2.369 sum 2.007 0.679 -11.087 11.288 Atomic orbital electron populations 1.22200 0.98528 1.00834 0.98829 1.19719 0.91431 0.94920 0.87299 0.94240 1.21576 1.33032 1.14140 0.89774 0.90611 1.24984 0.95464 0.96631 0.95808 1.69914 1.45281 1.40196 0.98014 0.86820 0.80517 0.83644 0.76995 1.20562 1.22489 1.19067 1.62727 1.05247 1.16412 1.40502 1.22659 1.00166 0.91255 0.96938 1.22724 0.80813 1.00515 0.97405 1.87867 1.19409 1.28030 1.94064 1.22470 0.92596 0.84369 0.95333 1.23027 0.93471 1.03632 0.98427 1.23113 0.95904 0.95788 0.93683 1.62772 1.03467 1.04991 1.59055 1.23246 0.92223 1.00353 0.94190 1.22466 0.90126 1.00115 0.95852 0.92766 0.94021 0.94413 0.92587 0.92952 0.90179 0.89337 0.92961 0.90097 0.89794 0.90203 0.90885 0.85009 0.90421 0.89952 0.91063 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.25 37.16 0.31 -2.80 16 2 C 0.17 3.99 2.07 -68.87 -0.14 3.85 16 3 H 0.04 0.95 7.18 -51.93 -0.37 0.58 16 4 C -0.55 -14.77 7.69 -34.44 -0.26 -15.04 16 5 H 0.08 2.26 6.03 -52.49 -0.32 1.95 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 7 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.89 21.56 24.39 -169.99 -4.15 17.41 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 10 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 12 N -0.52 -10.48 4.47 -227.97 -1.02 -11.50 16 13 C 0.02 0.35 4.90 -3.71 -0.02 0.33 16 14 C 0.06 0.99 6.70 37.21 0.25 1.24 16 15 O -0.38 -6.56 10.21 -35.23 -0.36 -6.91 16 16 C 0.09 1.52 0.96 -89.93 -0.09 1.43 16 17 C -0.15 -2.03 6.33 -25.05 -0.16 -2.19 16 18 C 0.04 0.54 7.56 -1.83 -0.01 0.52 16 19 N -0.68 -8.77 7.52 -110.16 -0.83 -9.60 16 20 C 0.03 0.44 6.24 -2.91 -0.02 0.42 16 21 C 0.04 0.83 3.61 -3.92 -0.01 0.81 16 22 H 0.05 1.12 6.27 -51.93 -0.33 0.79 16 23 H 0.04 0.92 3.31 -51.93 -0.17 0.75 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 26 H 0.05 1.14 6.94 -51.93 -0.36 0.78 16 27 H 0.08 1.43 6.05 -51.93 -0.31 1.11 16 28 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.05 0.78 6.77 -51.93 -0.35 0.43 16 30 H 0.08 1.08 7.84 -51.93 -0.41 0.67 16 31 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.33 3.86 8.92 -39.29 -0.35 3.51 16 35 H 0.08 1.19 6.81 -51.93 -0.35 0.84 16 36 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.29 6.38 -51.93 -0.33 0.96 16 LS Contribution 277.93 15.07 4.19 4.19 Total: -1.00 -29.49 277.93 -7.41 -36.90 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.76 Total: 5.14 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.26 Total: -9.44 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -1.07 Total: -47.28 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.36 Total: -6.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.49 -7.41 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717494178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.988 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds