Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 N 1.46895 * 109.47264 * 239.99375 * 2 1 3 13 13 C 1.47015 * 111.00177 * 306.05282 * 12 2 1 14 14 C 1.53092 * 109.35086 * 177.21814 * 13 12 2 15 15 O 1.43120 * 109.22036 * 57.29685 * 14 13 12 16 16 C 1.42430 * 113.78925 * 302.28911 * 15 14 13 17 17 C 1.54168 * 110.02503 * 178.83367 * 16 15 14 18 18 C 1.55033 * 102.81184 * 97.37791 * 17 16 15 19 19 N 1.48566 * 103.28837 * 37.04635 * 18 17 16 20 20 C 1.48015 * 105.83905 * 321.04411 * 19 18 17 21 21 C 1.47110 * 111.00253 * 182.49500 * 12 2 1 22 22 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 24 24 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.48810 * 297.17601 * 13 12 2 27 27 H 1.08997 * 109.49520 * 57.22834 * 13 12 2 28 28 H 1.09011 * 109.51445 * 177.21674 * 14 13 12 29 29 H 1.08999 * 109.51289 * 297.36948 * 14 13 12 30 30 H 1.09003 * 110.74784 * 215.71087 * 17 16 15 31 31 H 1.08998 * 110.74611 * 339.04640 * 17 16 15 32 32 H 1.08998 * 110.65240 * 278.59826 * 18 17 16 33 33 H 1.09001 * 110.79758 * 155.56904 * 18 17 16 34 34 H 1.00907 * 111.00027 * 81.56405 * 19 18 17 35 35 H 1.08998 * 109.97307 * 265.89727 * 20 19 18 36 36 H 1.08996 * 109.98069 * 144.61508 * 20 19 18 37 37 H 1.09000 * 109.49734 * 301.41828 * 21 12 2 38 38 H 1.09001 * 109.49801 * 61.52270 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 7 2.0197 -0.6926 -1.1993 13 6 1.4338 -2.0366 -1.3077 14 6 1.9141 -2.6963 -2.6030 15 8 3.3447 -2.7367 -2.6088 16 6 3.9561 -1.4568 -2.4806 17 6 5.4907 -1.6037 -2.4677 18 6 5.8769 -1.3068 -3.9395 19 7 4.9287 -0.2323 -4.3313 20 6 3.6353 -0.5867 -3.7048 21 6 3.4890 -0.7642 -1.2038 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.9118 -0.5216 4.4376 26 1 1.7462 -2.6394 -0.4550 27 1 0.3466 -1.9596 -1.3198 28 1 1.5210 -3.7114 -2.6622 29 1 1.5626 -2.1186 -3.4579 30 1 5.9428 -0.8745 -1.7953 31 1 5.7792 -2.6174 -2.1898 32 1 5.7338 -2.1912 -4.5604 33 1 6.9063 -0.9544 -4.0060 34 1 5.2508 0.6687 -4.0109 35 1 3.0215 -1.1474 -4.4097 36 1 3.1127 0.3173 -3.3925 37 1 3.9025 0.2435 -1.1642 38 1 3.8282 -1.3316 -0.3371 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717494178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = -47.551651 kcal Electronic energy + Delta-G solvation = -18741.690547 eV Core-core repulsion = 16004.407295 eV Total energy + Delta-G solvation = -2737.283252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.46664 -38.53422 -37.06663 -34.54295 -32.38954 -31.88571 -30.07359 -28.36216 -27.15190 -25.40856 -24.13571 -22.76092 -21.28429 -20.25705 -18.67180 -17.75465 -17.62730 -17.18233 -16.34717 -16.12468 -15.56787 -15.54882 -14.84686 -14.60609 -14.56828 -14.22049 -14.01051 -13.48519 -13.18973 -13.03634 -12.84645 -12.69374 -12.47902 -12.33701 -12.07437 -11.96206 -11.75088 -11.58024 -11.40098 -11.20816 -10.80168 -10.55479 -9.57345 -9.06753 -8.36106 -6.41967 1.27486 1.33062 1.43648 2.26755 2.75086 2.99338 3.07773 3.30838 3.75591 3.83019 3.97591 4.17439 4.28682 4.31977 4.39762 4.42992 4.54278 4.59245 4.63003 4.69345 4.76833 4.83792 4.88016 4.92848 4.97897 5.09528 5.14142 5.16240 5.24160 5.35346 5.47401 5.70812 6.05046 6.24521 6.27441 6.31244 6.46702 6.64897 7.26152 8.80608 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.007435 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.682909 B = 3764.996313 C = 3888.118160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.174 3.826 3 H 0.036 0.964 4 C -0.540 4.540 5 H 0.029 0.971 6 C 0.014 3.986 7 N -0.949 5.949 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.301 1.301 11 H -0.244 1.244 12 N -0.513 5.513 13 C 0.020 3.980 14 C 0.066 3.934 15 O -0.390 6.390 16 C 0.093 3.907 17 C -0.147 4.147 18 C 0.054 3.946 19 N -0.674 5.674 20 C 0.041 3.959 21 C 0.048 3.952 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.070 0.930 25 H 0.265 0.735 26 H 0.009 0.991 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.345 0.655 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 1.498 -14.823 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.065 3.935 3 H 0.054 0.946 4 C -0.579 4.579 5 H 0.047 0.953 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.229 1.229 11 H -0.168 1.168 12 N -0.236 5.236 13 C -0.109 4.109 14 C -0.010 4.010 15 O -0.309 6.309 16 C 0.051 3.949 17 C -0.187 4.187 18 C -0.076 4.076 19 N -0.301 5.301 20 C -0.089 4.089 21 C -0.081 4.081 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 1.711 1.369 -15.788 15.940 hybrid contribution -0.142 0.152 2.985 2.992 sum 1.569 1.522 -12.803 12.988 Atomic orbital electron populations 1.22111 0.96463 1.01379 1.00037 1.19660 0.93041 0.94322 0.86441 0.94609 1.21795 1.31670 1.12619 0.91824 0.95281 1.25883 0.97100 1.00079 0.95328 1.70074 1.47572 1.42523 0.98693 0.85781 0.79033 0.79747 0.77390 1.19106 1.22863 1.16796 1.62767 1.05663 1.16925 1.38289 1.22724 1.00951 0.90065 0.97149 1.22828 0.80166 1.01949 0.96060 1.87861 1.20274 1.28810 1.93944 1.22574 0.93886 0.84046 0.94367 1.23075 0.91891 1.03455 1.00247 1.23121 0.97126 0.95638 0.91687 1.62764 1.02939 1.05807 1.58612 1.23066 0.93169 0.99575 0.93097 1.22453 0.89676 0.99901 0.96051 0.92684 0.94682 0.91156 0.92578 0.97217 0.88792 0.87022 0.90889 0.89844 0.90418 0.90267 0.88125 0.83869 0.90412 0.90390 0.90777 0.97010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.25 71.98 0.59 -5.13 16 2 C 0.17 7.88 2.07 44.17 0.09 7.97 16 3 H 0.04 1.67 7.18 -2.39 -0.02 1.65 16 4 C -0.54 -30.23 7.69 25.60 0.20 -30.04 16 5 H 0.03 1.86 6.03 -2.91 -0.02 1.85 16 6 C 0.01 0.80 5.45 84.65 0.46 1.26 16 7 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 8 Si 0.95 44.21 24.39 68.60 1.67 45.89 16 9 H -0.27 -11.66 6.87 99.48 0.68 -10.98 16 10 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.24 -10.40 6.53 99.48 0.65 -9.75 16 12 N -0.51 -20.28 4.47 -875.17 -3.91 -24.19 16 13 C 0.02 0.73 4.90 86.31 0.42 1.16 16 14 C 0.07 2.01 6.70 72.01 0.48 2.49 16 15 O -0.39 -13.32 10.21 -148.98 -1.52 -14.84 16 16 C 0.09 2.93 0.96 -10.34 -0.01 2.92 16 17 C -0.15 -3.96 6.33 31.69 0.20 -3.76 16 18 C 0.05 1.15 7.56 86.68 0.65 1.80 16 19 N -0.67 -15.54 7.52 -502.43 -3.78 -19.32 16 20 C 0.04 1.12 6.24 86.28 0.54 1.66 16 21 C 0.05 1.88 3.61 86.12 0.31 2.19 16 22 H 0.05 2.17 6.27 -2.39 -0.01 2.15 16 23 H 0.03 1.45 3.31 -2.38 -0.01 1.44 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.01 0.44 6.94 -2.39 -0.02 0.42 16 27 H 0.09 3.21 6.05 -2.39 -0.01 3.20 16 28 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 29 H 0.07 1.95 6.77 -2.39 -0.02 1.93 16 30 H 0.08 2.17 7.84 -2.39 -0.02 2.15 16 31 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.35 6.92 8.92 -89.69 -0.80 6.12 16 35 H 0.08 2.15 6.81 -2.39 -0.02 2.13 16 36 H 0.08 2.20 7.56 -2.39 -0.02 2.18 16 37 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.01 0.56 6.38 -2.39 -0.02 0.54 16 Total: -1.00 -65.82 277.93 -3.11 -68.93 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.18 Total: 19.97 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 3.94 Total: -17.46 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -7.39 Total: -102.49 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -1.52 Total: -14.84 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.67 Total: 45.89 kcal Total: -65.82 -3.11 -68.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717494178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.381 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds