Wall clock time and date at job start Mon Mar 30 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47147 * 2 1 4 4 C 1.50696 * 109.47082 * 120.00039 * 2 1 3 5 5 H 1.07995 * 120.00650 * 114.58331 * 4 2 1 6 6 C 1.37880 * 119.99840 * 294.57631 * 4 2 1 7 7 N 1.31510 * 120.00206 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00172 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46872 * 90.00455 * 8 6 4 10 10 H 1.48498 * 109.47274 * 210.00476 * 8 6 4 11 11 H 1.48499 * 109.47035 * 330.00912 * 8 6 4 12 12 N 1.46896 * 109.47057 * 239.99633 * 2 1 3 13 13 C 1.47022 * 110.99918 * 295.22380 * 12 2 1 14 14 C 1.53096 * 109.36925 * 177.23925 * 13 12 2 15 15 O 1.43122 * 109.20941 * 57.27682 * 14 13 12 16 16 C 1.42438 * 113.78943 * 302.28183 * 15 14 13 17 17 C 1.54180 * 109.98708 * 295.65476 * 16 15 14 18 18 C 1.55031 * 102.81851 * 262.63093 * 17 16 15 19 19 N 1.48568 * 103.27712 * 322.93700 * 18 17 16 20 20 C 1.48022 * 105.83967 * 38.94954 * 19 18 17 21 21 C 1.47107 * 111.00240 * 171.67160 * 12 2 1 22 22 H 1.09003 * 109.47176 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46673 * 300.00479 * 1 2 3 24 24 H 1.09002 * 109.47213 * 60.00084 * 1 2 3 25 25 H 0.97002 * 120.00386 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.48478 * 297.20323 * 13 12 2 27 27 H 1.08990 * 109.49051 * 57.27266 * 13 12 2 28 28 H 1.08998 * 109.51795 * 177.19937 * 14 13 12 29 29 H 1.09002 * 109.51609 * 297.31007 * 14 13 12 30 30 H 1.09000 * 110.74596 * 20.96469 * 17 16 15 31 31 H 1.09001 * 110.74252 * 144.29876 * 17 16 15 32 32 H 1.08995 * 110.65728 * 204.48283 * 18 17 16 33 33 H 1.09006 * 110.65272 * 81.38301 * 18 17 16 34 34 H 1.00899 * 111.00023 * 278.42016 * 19 18 17 35 35 H 1.08997 * 109.97163 * 94.12536 * 20 19 18 36 36 H 1.08996 * 109.97295 * 215.36568 * 20 19 18 37 37 H 1.09008 * 109.50205 * 61.52042 * 21 12 2 38 38 H 1.08999 * 109.53616 * 301.43053 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5792 -1.6366 1.1339 6 6 1.7939 -0.1777 2.4796 7 7 1.1277 0.9500 2.5974 8 14 2.4159 -1.0586 4.0050 9 1 3.7814 -0.5759 4.3330 10 1 1.5051 -0.7791 5.1440 11 1 2.4558 -2.5211 3.7503 12 7 2.0197 -0.6926 -1.1994 13 6 1.6438 -2.1137 -1.1775 14 6 2.1113 -2.7826 -2.4728 15 8 3.5251 -2.6072 -2.6097 16 6 3.9374 -1.2438 -2.6114 17 6 3.3623 -0.5209 -3.8459 18 6 4.5416 -0.5656 -4.8511 19 7 5.7347 -0.3773 -3.9860 20 6 5.4635 -1.1465 -2.7508 21 6 3.4766 -0.5424 -1.3371 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.9596 1.3246 3.4762 26 1 2.1166 -2.6018 -0.3251 27 1 0.5608 -2.2022 -1.0930 28 1 1.8782 -3.8468 -2.4378 29 1 1.6031 -2.3262 -3.3222 30 1 2.4988 -1.0569 -4.2397 31 1 3.1008 0.5091 -3.6031 32 1 4.4602 0.2446 -5.5757 33 1 4.5807 -1.5313 -5.3553 34 1 5.8808 0.5994 -3.7791 35 1 5.8944 -2.1444 -2.8315 36 1 5.8844 -0.6280 -1.8894 37 1 3.9717 -0.9907 -0.4756 38 1 3.7303 0.5162 -1.3923 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717494179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:12 Heat of formation + Delta-G solvation = -53.273406 kcal Electronic energy + Delta-G solvation = -18682.991699 eV Core-core repulsion = 15945.460333 eV Total energy + Delta-G solvation = -2737.531366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42140 -38.41542 -36.99920 -34.53054 -32.09568 -31.29998 -30.22273 -28.16315 -27.22542 -25.47920 -23.86579 -22.75559 -21.38151 -20.25346 -18.40066 -17.58998 -17.37849 -17.17834 -16.44479 -16.12037 -15.44668 -15.13964 -14.95245 -14.64095 -14.43992 -14.05449 -13.47556 -13.28814 -13.06648 -12.92413 -12.84329 -12.60307 -12.51245 -12.31871 -12.21805 -12.12714 -11.80105 -11.73811 -11.27401 -11.14076 -10.55975 -10.42244 -9.62351 -9.06092 -8.13060 -6.33038 1.32565 1.35041 1.43694 2.35079 2.77729 3.09555 3.17976 3.27681 3.75867 3.85920 4.07250 4.19979 4.29422 4.34329 4.44856 4.48092 4.60749 4.63171 4.80635 4.81994 4.88356 4.98038 5.00344 5.04955 5.11435 5.15772 5.19810 5.24943 5.45061 5.61728 5.63576 5.86456 6.08440 6.24749 6.29926 6.43402 6.49131 6.85654 7.38049 8.85949 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031411 B = 0.007324 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.194191 B = 3822.108540 C = 3997.318564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.210 3.790 3 H 0.008 0.992 4 C -0.552 4.552 5 H 0.047 0.953 6 C 0.023 3.977 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.526 5.526 13 C 0.024 3.976 14 C 0.067 3.933 15 O -0.386 6.386 16 C 0.094 3.906 17 C -0.161 4.161 18 C 0.049 3.951 19 N -0.670 5.670 20 C 0.059 3.941 21 C 0.049 3.951 22 H 0.034 0.966 23 H 0.049 0.951 24 H 0.033 0.967 25 H 0.263 0.737 26 H 0.021 0.979 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.346 0.654 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.016 0.984 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -3.505 -12.032 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 H 0.026 0.974 4 C -0.591 4.591 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.552 5.552 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.250 5.250 13 C -0.105 4.105 14 C -0.010 4.010 15 O -0.305 6.305 16 C 0.052 3.948 17 C -0.200 4.200 18 C -0.080 4.080 19 N -0.297 5.297 20 C -0.071 4.071 21 C -0.080 4.080 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.035 0.965 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.373 -3.793 -12.665 13.925 hybrid contribution -0.474 0.174 2.723 2.770 sum 3.899 -3.619 -9.941 11.275 Atomic orbital electron populations 1.21550 0.97103 0.99166 0.99361 1.19085 0.92721 0.92698 0.85232 0.97355 1.21879 1.35764 1.08464 0.92966 0.93453 1.25599 0.95098 0.95452 1.01547 1.70012 1.40825 1.19938 1.24380 0.85755 0.78307 0.79009 0.79787 1.20334 1.20501 1.19854 1.62740 1.11004 1.11455 1.39785 1.22637 1.01117 0.89447 0.97255 1.22835 0.80925 1.01280 0.95929 1.87851 1.23751 1.25026 1.93842 1.22563 0.96078 0.82161 0.93989 1.23414 1.00030 1.01045 0.95512 1.23153 0.86377 1.03105 0.95335 1.62826 1.38594 1.15478 1.12836 1.22582 0.90862 1.00481 0.93194 1.22442 0.89728 0.99671 0.96131 0.94705 0.93182 0.94815 0.92753 0.96118 0.90238 0.86938 0.91467 0.90221 0.90971 0.88559 0.90244 0.83793 0.89924 0.90374 0.96521 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.39 8.92 71.98 0.64 -4.75 16 2 C 0.21 10.47 2.23 44.17 0.10 10.57 16 3 H 0.01 0.48 8.08 -2.39 -0.02 0.46 16 4 C -0.55 -29.90 7.08 25.60 0.18 -29.72 16 5 H 0.05 2.62 5.80 -2.91 -0.02 2.61 16 6 C 0.02 1.28 5.33 84.66 0.45 1.73 16 7 N -0.91 -52.02 11.73 21.45 0.25 -51.77 16 8 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.53 -21.94 4.47 -875.14 -3.91 -25.85 16 13 C 0.02 0.92 4.98 86.31 0.43 1.35 16 14 C 0.07 2.04 6.72 72.01 0.48 2.53 16 15 O -0.39 -12.90 10.21 -148.98 -1.52 -14.42 16 16 C 0.09 2.94 0.98 -10.34 -0.01 2.93 16 17 C -0.16 -4.28 5.87 31.69 0.19 -4.09 16 18 C 0.05 1.07 7.56 86.68 0.65 1.73 16 19 N -0.67 -15.61 7.52 -502.45 -3.78 -19.39 16 20 C 0.06 1.64 7.00 86.27 0.60 2.24 16 21 C 0.05 1.93 3.77 86.13 0.32 2.25 16 22 H 0.03 1.56 6.46 -2.39 -0.02 1.54 16 23 H 0.05 2.62 6.51 -2.39 -0.02 2.61 16 24 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.02 0.91 6.22 -2.39 -0.01 0.90 16 27 H 0.08 3.00 6.31 -2.39 -0.02 2.98 16 28 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.07 1.88 6.34 -2.39 -0.02 1.87 16 30 H 0.08 2.12 6.12 -2.39 -0.01 2.10 16 31 H 0.07 2.02 7.77 -2.39 -0.02 2.00 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.35 7.04 8.92 -89.69 -0.80 6.24 16 35 H 0.08 2.37 7.96 -2.39 -0.02 2.35 16 36 H 0.08 2.12 7.68 -2.39 -0.02 2.10 16 37 H 0.02 0.74 7.18 -2.38 -0.02 0.72 16 38 H 0.07 2.59 8.02 -2.39 -0.02 2.57 16 Total: -1.00 -59.74 285.45 -2.63 -62.37 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.25 Total: 16.61 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 4.05 Total: -13.23 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -7.43 Total: -97.01 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.52 Total: -14.42 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -59.74 -2.63 -62.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717494179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.092 kcal (2) G-P(sol) polarization free energy of solvation -59.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds