Wall clock time and date at job start Mon Mar 30 2020 03:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47047 * 2 1 4 4 C 1.36936 * 120.00111 * 269.51650 * 3 2 1 5 5 H 1.07998 * 120.00190 * 320.41608 * 4 3 2 6 6 C 1.38814 * 119.99474 * 140.41119 * 4 3 2 7 7 N 1.31616 * 120.00295 * 340.09415 * 6 4 3 8 8 Si 1.86803 * 119.99687 * 160.09878 * 6 4 3 9 9 H 1.48494 * 109.47389 * 89.99999 * 8 6 4 10 10 H 1.48494 * 109.47262 * 210.00037 * 8 6 4 11 11 H 1.48506 * 109.47163 * 329.99906 * 8 6 4 12 12 C 1.46494 * 119.99877 * 89.52264 * 3 2 1 13 13 C 1.52999 * 109.47527 * 84.57352 * 12 3 2 14 14 H 1.09000 * 109.79320 * 28.96764 * 13 12 3 15 15 C 1.53018 * 109.64675 * 268.48177 * 13 12 3 16 16 C 1.51784 * 110.75159 * 325.20415 * 15 13 12 17 17 C 1.51781 * 113.81296 * 293.19179 * 16 15 13 18 18 C 1.52980 * 110.87860 * 66.99581 * 17 16 15 19 19 N 1.47194 * 108.66923 * 273.53865 * 18 17 16 20 20 C 1.33377 * 120.42461 * 71.94756 * 19 18 17 21 21 O 1.21284 * 119.88736 * 179.45283 * 20 19 18 22 22 H 1.08998 * 109.47034 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46777 * 300.00012 * 1 2 3 24 24 H 1.08998 * 109.47127 * 59.99374 * 1 2 3 25 25 H 1.09000 * 109.46912 * 240.00491 * 2 1 3 26 26 H 1.08993 * 109.47291 * 120.00176 * 2 1 3 27 27 H 0.96998 * 119.99797 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47292 * 324.57658 * 12 3 2 29 29 H 1.09000 * 109.47546 * 204.57668 * 12 3 2 30 30 H 1.09006 * 109.21763 * 204.87645 * 15 13 12 31 31 H 1.09004 * 109.22139 * 85.53456 * 15 13 12 32 32 H 1.09000 * 108.61871 * 172.06820 * 16 15 13 33 33 H 1.09000 * 108.50730 * 54.23110 * 16 15 13 34 34 H 1.09001 * 109.19020 * 306.63562 * 17 16 15 35 35 H 1.08996 * 109.19699 * 187.35754 * 17 16 15 36 36 H 1.08996 * 109.60909 * 153.78379 * 18 17 16 37 37 H 1.09002 * 109.74268 * 33.37247 * 18 17 16 38 38 H 0.96991 * 119.78929 * 251.96875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2560 2.0235 -1.1858 5 1 2.7064 1.4885 -2.0089 6 6 1.9179 3.3620 -1.3300 7 7 1.0398 3.9103 -0.5172 8 14 2.7091 4.3852 -2.6778 9 1 1.8861 4.3012 -3.9109 10 1 2.7977 5.8006 -2.2374 11 1 4.0728 3.8673 -2.9566 12 6 2.2525 2.0753 1.2686 13 6 3.6480 1.7272 1.7906 14 1 4.3108 1.5075 0.9537 15 6 3.5633 0.5088 2.7124 16 6 2.2660 0.5197 3.5003 17 6 2.1676 1.6548 4.5031 18 6 2.0866 3.0061 3.7907 19 7 3.4540 3.4796 3.5215 20 6 4.1997 2.8927 2.5842 21 8 5.3217 3.2971 2.3636 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.8038 4.8458 -0.6178 28 1 1.5040 1.7634 1.9971 29 1 2.1811 3.1517 1.1126 30 1 4.4044 0.5242 3.4056 31 1 3.6108 -0.3996 2.1118 32 1 2.1757 -0.4259 4.0350 33 1 1.4358 0.6022 2.7988 34 1 3.0469 1.6412 5.1471 35 1 1.2751 1.5173 5.1135 36 1 1.5695 3.7245 4.4267 37 1 1.5464 2.8949 2.8505 38 1 3.8153 4.2229 4.0291 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721128710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:59 Heat of formation + Delta-G solvation = -7.329184 kcal Electronic energy + Delta-G solvation = -18978.935478 eV Core-core repulsion = 16243.396403 eV Total energy + Delta-G solvation = -2735.539075 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15640 -36.90876 -35.41171 -33.31757 -31.74530 -31.03569 -28.87911 -26.98021 -24.61891 -23.71266 -23.10895 -20.75664 -19.65624 -18.63818 -16.88204 -16.56328 -15.91903 -15.05502 -14.55288 -14.38609 -13.82401 -13.66142 -13.33574 -13.17830 -12.91403 -12.31279 -12.29392 -12.10359 -11.40970 -11.28573 -11.12675 -11.00914 -10.68706 -10.42609 -10.38261 -10.34612 -10.09527 -9.99867 -9.83424 -9.34105 -9.01645 -8.59089 -8.39788 -6.53452 -5.81850 -3.38591 3.31211 3.38347 3.46102 3.51267 3.85149 4.49678 4.95282 5.10054 5.13662 5.20942 5.37369 5.57643 5.66242 5.74556 5.85258 5.92093 6.07351 6.15258 6.19304 6.27345 6.31599 6.35860 6.41230 6.51239 6.57708 6.71154 6.78760 6.97323 6.99565 7.26998 7.34176 7.49445 7.81039 7.83542 8.53206 8.84784 9.19159 9.80261 10.39282 11.20087 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.010934 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.997754 B = 2560.241262 C = 3226.131417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 N -0.581 5.581 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.141 3.859 13 C -0.130 4.130 14 H 0.103 0.897 15 C -0.101 4.101 16 C -0.135 4.135 17 C -0.134 4.134 18 C 0.075 3.925 19 N -0.724 5.724 20 C 0.531 3.469 21 O -0.569 6.569 22 H 0.029 0.971 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.254 0.746 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -5.118 9.708 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 N -0.302 5.302 4 C -0.391 4.391 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.202 1.202 12 C 0.015 3.985 13 C -0.154 4.154 14 H 0.121 0.879 15 C -0.139 4.139 16 C -0.172 4.172 17 C -0.172 4.172 18 C -0.049 4.049 19 N -0.375 5.375 20 C 0.318 3.682 21 O -0.448 6.448 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.743 -4.928 9.461 10.694 hybrid contribution 0.436 0.998 -0.381 1.154 sum -0.307 -3.929 9.080 9.899 Atomic orbital electron populations 1.22276 0.99795 0.98238 1.01875 1.20944 0.91874 0.87653 0.98269 1.43826 1.74490 1.09987 1.01882 1.19022 1.34300 0.93680 0.92121 0.92319 1.25197 0.96177 0.99232 0.97802 1.69975 1.30572 1.12660 1.39858 0.86451 0.79820 0.79733 0.81729 1.21252 1.21519 1.20158 1.21590 0.89169 1.00871 0.86916 1.22531 1.03638 0.91865 0.97384 0.87899 1.21200 0.97022 0.98176 0.97507 1.21352 0.99732 0.97790 0.98302 1.21744 1.01981 0.95232 0.98257 1.22512 0.83687 0.95100 1.03594 1.45831 1.16050 1.36345 1.39264 1.20889 0.84531 0.84065 0.78710 1.90658 1.20464 1.65866 1.67786 0.95212 0.93963 0.92636 0.94076 0.94610 0.93635 0.92234 0.88877 0.93153 0.91190 0.92606 0.89764 0.92056 0.91213 0.90585 0.86474 0.77521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 37.16 0.38 -2.69 16 2 C 0.14 2.76 6.30 -4.04 -0.03 2.73 16 3 N -0.58 -13.63 2.35 -173.24 -0.41 -14.04 16 4 C -0.26 -7.00 9.44 -15.06 -0.14 -7.14 16 5 H 0.06 1.59 7.91 -52.49 -0.41 1.17 16 6 C 0.02 0.45 4.92 -17.43 -0.09 0.36 16 7 N -0.89 -24.72 11.61 55.49 0.64 -24.08 16 8 Si 0.89 21.94 29.60 -169.99 -5.03 16.91 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.14 3.01 2.86 -4.05 -0.01 3.00 16 13 C -0.13 -2.58 2.83 -91.41 -0.26 -2.84 16 14 H 0.10 2.33 8.03 -51.93 -0.42 1.91 16 15 C -0.10 -1.60 4.87 -27.34 -0.13 -1.73 16 16 C -0.13 -1.82 5.04 -27.97 -0.14 -1.96 16 17 C -0.13 -1.63 5.74 -27.36 -0.16 -1.78 16 18 C 0.07 1.04 6.36 -3.67 -0.02 1.02 16 19 N -0.72 -11.82 5.27 -59.91 -0.32 -12.13 16 20 C 0.53 10.81 6.43 -11.25 -0.07 10.73 16 21 O -0.57 -13.67 17.92 5.55 0.10 -13.57 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 26 H 0.04 0.63 5.88 -51.93 -0.31 0.32 16 27 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.06 1.15 2.84 -51.93 -0.15 1.01 16 29 H 0.09 2.34 4.99 -51.93 -0.26 2.08 16 30 H 0.05 0.78 7.86 -51.93 -0.41 0.37 16 31 H 0.07 1.07 7.29 -51.93 -0.38 0.69 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.25 4.92 -51.93 -0.26 1.00 16 34 H 0.06 0.74 8.05 -51.93 -0.42 0.33 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.12 1.97 3.62 -51.93 -0.19 1.78 16 38 H 0.39 5.67 8.91 -40.82 -0.36 5.31 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -30.57 288.58 -6.98 -37.54 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.64 Total: 5.32 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.67 Total: -0.29 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.08 Total: -50.25 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.10 Total: -13.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.57 -6.98 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721128710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.211 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds