Wall clock time and date at job start Mon Mar 30 2020 03:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47047 * 2 1 4 4 C 1.36936 * 120.00111 * 269.51650 * 3 2 1 5 5 H 1.07998 * 120.00190 * 320.41608 * 4 3 2 6 6 C 1.38814 * 119.99474 * 140.41119 * 4 3 2 7 7 N 1.31616 * 120.00295 * 340.09415 * 6 4 3 8 8 Si 1.86803 * 119.99687 * 160.09878 * 6 4 3 9 9 H 1.48494 * 109.47389 * 89.99999 * 8 6 4 10 10 H 1.48494 * 109.47262 * 210.00037 * 8 6 4 11 11 H 1.48506 * 109.47163 * 329.99906 * 8 6 4 12 12 C 1.46494 * 119.99877 * 89.52264 * 3 2 1 13 13 C 1.52999 * 109.47527 * 84.57352 * 12 3 2 14 14 H 1.09000 * 109.79320 * 28.96764 * 13 12 3 15 15 C 1.53018 * 109.64675 * 268.48177 * 13 12 3 16 16 C 1.51784 * 110.75159 * 325.20415 * 15 13 12 17 17 C 1.51781 * 113.81296 * 293.19179 * 16 15 13 18 18 C 1.52980 * 110.87860 * 66.99581 * 17 16 15 19 19 N 1.47194 * 108.66923 * 273.53865 * 18 17 16 20 20 C 1.33377 * 120.42461 * 71.94756 * 19 18 17 21 21 O 1.21284 * 119.88736 * 179.45283 * 20 19 18 22 22 H 1.08998 * 109.47034 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46777 * 300.00012 * 1 2 3 24 24 H 1.08998 * 109.47127 * 59.99374 * 1 2 3 25 25 H 1.09000 * 109.46912 * 240.00491 * 2 1 3 26 26 H 1.08993 * 109.47291 * 120.00176 * 2 1 3 27 27 H 0.96998 * 119.99797 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47292 * 324.57658 * 12 3 2 29 29 H 1.09000 * 109.47546 * 204.57668 * 12 3 2 30 30 H 1.09006 * 109.21763 * 204.87645 * 15 13 12 31 31 H 1.09004 * 109.22139 * 85.53456 * 15 13 12 32 32 H 1.09000 * 108.61871 * 172.06820 * 16 15 13 33 33 H 1.09000 * 108.50730 * 54.23110 * 16 15 13 34 34 H 1.09001 * 109.19020 * 306.63562 * 17 16 15 35 35 H 1.08996 * 109.19699 * 187.35754 * 17 16 15 36 36 H 1.08996 * 109.60909 * 153.78379 * 18 17 16 37 37 H 1.09002 * 109.74268 * 33.37247 * 18 17 16 38 38 H 0.96991 * 119.78929 * 251.96875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2560 2.0235 -1.1858 5 1 2.7064 1.4885 -2.0089 6 6 1.9179 3.3620 -1.3300 7 7 1.0398 3.9103 -0.5172 8 14 2.7091 4.3852 -2.6778 9 1 1.8861 4.3012 -3.9109 10 1 2.7977 5.8006 -2.2374 11 1 4.0728 3.8673 -2.9566 12 6 2.2525 2.0753 1.2686 13 6 3.6480 1.7272 1.7906 14 1 4.3108 1.5075 0.9537 15 6 3.5633 0.5088 2.7124 16 6 2.2660 0.5197 3.5003 17 6 2.1676 1.6548 4.5031 18 6 2.0866 3.0061 3.7907 19 7 3.4540 3.4796 3.5215 20 6 4.1997 2.8927 2.5842 21 8 5.3217 3.2971 2.3636 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.8038 4.8458 -0.6178 28 1 1.5040 1.7634 1.9971 29 1 2.1811 3.1517 1.1126 30 1 4.4044 0.5242 3.4056 31 1 3.6108 -0.3996 2.1118 32 1 2.1757 -0.4259 4.0350 33 1 1.4358 0.6022 2.7988 34 1 3.0469 1.6412 5.1471 35 1 1.2751 1.5173 5.1135 36 1 1.5695 3.7245 4.4267 37 1 1.5464 2.8949 2.8505 38 1 3.8153 4.2229 4.0291 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721128710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:59 Heat of formation + Delta-G solvation = -27.831480 kcal Electronic energy + Delta-G solvation = -18979.824525 eV Core-core repulsion = 16243.396403 eV Total energy + Delta-G solvation = -2736.428122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62829 -38.52556 -37.01603 -34.74920 -33.64173 -32.43049 -30.50823 -28.53102 -26.32829 -25.11129 -24.63353 -22.30363 -21.12386 -20.09594 -18.62281 -18.13613 -17.41616 -16.56979 -16.45985 -15.96244 -15.50248 -15.12467 -14.71571 -14.55653 -14.39968 -13.92480 -13.82039 -13.56477 -13.11339 -12.83593 -12.69507 -12.60746 -12.37485 -12.29415 -12.01426 -11.76594 -11.59880 -11.47299 -11.39771 -10.87525 -10.70485 -10.37627 -9.93679 -8.47140 -7.84363 -5.44040 1.38654 1.43708 1.51353 1.71884 2.47518 2.51175 3.23608 3.53045 3.85856 3.98804 4.07526 4.12195 4.37006 4.51567 4.53848 4.57729 4.71912 4.79781 4.90783 4.93499 4.97109 5.08306 5.15144 5.22053 5.23425 5.31143 5.37281 5.39297 5.56053 5.66298 5.71163 5.80265 6.01237 6.34481 6.49730 7.21032 7.33008 7.90935 8.40957 9.11303 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.010934 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.997754 B = 2560.241262 C = 3226.131417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.597 5.597 4 C -0.268 4.268 5 H 0.048 0.952 6 C -0.026 4.026 7 N -0.906 5.906 8 Si 0.938 3.062 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.151 3.849 13 C -0.125 4.125 14 H 0.064 0.936 15 C -0.095 4.095 16 C -0.132 4.132 17 C -0.128 4.128 18 C 0.070 3.930 19 N -0.709 5.709 20 C 0.523 3.477 21 O -0.617 6.617 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.021 0.979 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.250 0.750 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -6.413 11.736 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 N -0.318 5.318 4 C -0.399 4.399 5 H 0.065 0.935 6 C -0.224 4.224 7 N -0.549 5.549 8 Si 0.767 3.233 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.207 1.207 12 C 0.026 3.974 13 C -0.149 4.149 14 H 0.083 0.917 15 C -0.133 4.133 16 C -0.169 4.169 17 C -0.166 4.166 18 C -0.053 4.053 19 N -0.359 5.359 20 C 0.311 3.689 21 O -0.500 6.500 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.797 -6.238 11.517 13.220 hybrid contribution 0.750 1.360 -0.982 1.837 sum -1.046 -4.878 10.535 11.656 Atomic orbital electron populations 1.22127 0.98686 1.00043 1.00157 1.21086 0.92674 0.85806 0.99449 1.44041 1.75010 1.11227 1.01540 1.19174 1.33524 0.94124 0.93098 0.93467 1.25690 0.97000 1.00118 0.99625 1.70058 1.31523 1.12404 1.40954 0.85740 0.78903 0.78241 0.80393 1.20399 1.22030 1.20711 1.21520 0.90683 0.98456 0.86761 1.22338 1.01551 0.93860 0.97193 0.91742 1.21186 0.98958 0.96007 0.97104 1.21337 0.97205 1.00070 0.98266 1.21733 1.03946 0.93004 0.97925 1.22682 0.81854 0.97634 1.03084 1.45796 1.16596 1.35758 1.37734 1.21026 0.84223 0.84289 0.79374 1.90626 1.22590 1.67279 1.69546 0.91560 0.93994 0.95951 0.94626 0.91639 0.94088 0.89521 0.92737 0.92646 0.90646 0.89479 0.91048 0.91409 0.87826 0.87200 0.89327 0.76351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.24 71.98 0.74 -4.69 16 2 C 0.13 5.19 6.30 86.38 0.54 5.74 16 3 N -0.60 -28.14 2.35 -702.02 -1.65 -29.78 16 4 C -0.27 -14.68 9.44 84.03 0.79 -13.89 16 5 H 0.05 2.63 7.91 -2.91 -0.02 2.61 16 6 C -0.03 -1.45 4.92 84.86 0.42 -1.04 16 7 N -0.91 -51.37 11.61 21.65 0.25 -51.12 16 8 Si 0.94 46.07 29.60 68.60 2.03 48.10 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 10 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 11 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 12 C 0.15 6.47 2.86 86.38 0.25 6.72 16 13 C -0.13 -4.99 2.83 -11.31 -0.03 -5.02 16 14 H 0.06 3.03 8.03 -2.39 -0.02 3.01 16 15 C -0.09 -2.79 4.87 30.20 0.15 -2.64 16 16 C -0.13 -3.04 5.04 29.79 0.15 -2.89 16 17 C -0.13 -2.55 5.74 30.19 0.17 -2.38 16 18 C 0.07 1.77 6.36 86.24 0.55 2.32 16 19 N -0.71 -22.30 5.27 -462.61 -2.44 -24.73 16 20 C 0.52 21.45 6.43 88.10 0.57 22.01 16 21 O -0.62 -30.49 17.92 -3.04 -0.05 -30.55 16 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 1.39 8.04 -2.39 -0.02 1.37 16 26 H 0.07 2.12 5.88 -2.39 -0.01 2.11 16 27 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.09 3.23 2.84 -2.39 -0.01 3.22 16 29 H 0.05 2.80 4.99 -2.39 -0.01 2.78 16 30 H 0.05 1.59 7.86 -2.38 -0.02 1.57 16 31 H 0.07 2.13 7.29 -2.38 -0.02 2.11 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.86 4.92 -2.39 -0.01 1.85 16 34 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.09 2.84 3.62 -2.39 -0.01 2.83 16 38 H 0.40 11.11 8.91 -92.72 -0.83 10.29 16 Total: -1.00 -68.57 288.58 2.67 -65.90 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.24 Total: 17.95 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 4.29 Total: 4.24 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.83 Total: -105.64 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.55 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -68.57 2.67 -65.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721128710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.069 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds