Wall clock time and date at job start Mon Mar 30 2020 03:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47152 * 2 1 4 4 C 1.36933 * 120.00283 * 264.47432 * 3 2 1 5 5 H 1.08000 * 120.00358 * 138.97136 * 4 3 2 6 6 C 1.38812 * 119.99939 * 318.96910 * 4 3 2 7 7 N 1.31618 * 120.00161 * 341.16814 * 6 4 3 8 8 Si 1.86801 * 120.00193 * 161.17252 * 6 4 3 9 9 H 1.48500 * 109.46783 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47375 * 119.99765 * 8 6 4 11 11 H 1.48505 * 109.46882 * 239.99832 * 8 6 4 12 12 C 1.46505 * 119.99646 * 84.47229 * 3 2 1 13 13 C 1.53001 * 109.47279 * 90.11363 * 12 3 2 14 14 H 1.09001 * 109.79297 * 331.09092 * 13 12 3 15 15 C 1.53059 * 109.63248 * 91.58855 * 13 12 3 16 16 C 1.51794 * 110.74785 * 34.78418 * 15 13 12 17 17 C 1.51771 * 113.81162 * 66.80993 * 16 15 13 18 18 C 1.52994 * 110.88154 * 293.00385 * 17 16 15 19 19 N 1.47191 * 108.80252 * 86.37972 * 18 17 16 20 20 C 1.33310 * 120.47795 * 288.35113 * 19 18 17 21 21 O 1.21284 * 119.90764 * 180.14156 * 20 19 18 22 22 H 1.09000 * 109.46898 * 60.00054 * 1 2 3 23 23 H 1.09004 * 109.46634 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46880 * 299.99502 * 1 2 3 25 25 H 1.09004 * 109.47190 * 240.00092 * 2 1 3 26 26 H 1.08997 * 109.47633 * 120.00498 * 2 1 3 27 27 H 0.96997 * 120.00518 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47079 * 330.11151 * 12 3 2 29 29 H 1.09002 * 109.46745 * 210.11207 * 12 3 2 30 30 H 1.08995 * 109.22464 * 274.45575 * 15 13 12 31 31 H 1.09000 * 109.22288 * 155.10756 * 15 13 12 32 32 H 1.09006 * 108.61090 * 305.69085 * 16 15 13 33 33 H 1.09002 * 108.50719 * 187.85347 * 16 15 13 34 34 H 1.09000 * 109.19730 * 172.64485 * 17 16 15 35 35 H 1.08999 * 109.19507 * 53.36632 * 17 16 15 36 36 H 1.08997 * 109.60637 * 206.21491 * 18 17 16 37 37 H 1.08996 * 109.60103 * 326.54492 * 18 17 16 38 38 H 0.96998 * 119.78737 * 108.11549 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3542 1.9887 -1.1803 5 1 2.0822 3.0194 -1.3538 6 6 3.0445 1.2798 -2.1539 7 7 3.6950 0.1820 -1.8317 8 14 3.0501 1.8840 -3.9216 9 1 2.2496 3.1308 -4.0210 10 1 4.4464 2.1564 -4.3472 11 1 2.4581 0.8446 -4.8017 12 6 2.1473 2.1125 1.2629 13 6 3.5468 1.8908 1.8401 14 1 3.9262 0.9187 1.5250 15 6 4.4867 2.9939 1.3480 16 6 3.7464 4.3127 1.2177 17 6 3.2844 4.8895 2.5433 18 6 2.2029 4.0098 3.1735 19 7 2.8529 2.9497 3.9609 20 6 3.4886 1.9485 3.3521 21 8 4.0185 1.0790 4.0110 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.1771 -0.3136 -2.5121 28 1 1.4010 1.7506 1.9701 29 1 1.9924 3.1765 1.0840 30 1 4.8924 2.7127 0.3762 31 1 5.3057 3.1108 2.0578 32 1 2.8745 4.1608 0.5814 33 1 4.4065 5.0338 0.7355 34 1 2.8822 5.8891 2.3785 35 1 4.1348 4.9537 3.2221 36 1 1.5728 4.6152 3.8251 37 1 1.5934 3.5613 2.3890 38 1 2.8217 2.9812 4.9299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721128720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:02 Heat of formation + Delta-G solvation = -7.660217 kcal Electronic energy + Delta-G solvation = -18809.539492 eV Core-core repulsion = 16073.986062 eV Total energy + Delta-G solvation = -2735.553430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19478 -36.88592 -35.48886 -33.36083 -31.63792 -30.87273 -29.03894 -27.06811 -24.48668 -23.53125 -23.29383 -20.70776 -19.70849 -18.54101 -16.90665 -16.79235 -15.69894 -14.94584 -14.81900 -14.34034 -13.76331 -13.53900 -13.40717 -13.23349 -12.85060 -12.39515 -12.30386 -11.91989 -11.47492 -11.19739 -11.13124 -10.93153 -10.85138 -10.58468 -10.29613 -10.10930 -10.09405 -10.01076 -9.58624 -9.42454 -9.04289 -8.70301 -8.45098 -6.51740 -5.79288 -3.41082 3.21028 3.33341 3.42907 3.43802 3.71938 4.45425 4.97865 5.06759 5.16168 5.29022 5.36350 5.57674 5.68208 5.78381 5.84009 5.92860 6.10027 6.22780 6.26637 6.28597 6.34048 6.43152 6.55493 6.63477 6.66653 6.87759 6.89807 6.96215 7.10008 7.23387 7.25804 7.69568 7.71814 7.80501 8.53400 8.73874 9.18907 9.78947 10.41476 11.21071 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.009073 C = 0.008034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.027883 B = 3085.198256 C = 3484.191542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 N -0.579 5.579 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.289 1.289 12 C 0.135 3.865 13 C -0.121 4.121 14 H 0.106 0.894 15 C -0.091 4.091 16 C -0.132 4.132 17 C -0.136 4.136 18 C 0.080 3.920 19 N -0.727 5.727 20 C 0.522 3.478 21 O -0.568 6.568 22 H 0.049 0.951 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.087 0.913 26 H 0.021 0.979 27 H 0.254 0.746 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 8.226 6.720 11.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.215 1.215 12 C 0.008 3.992 13 C -0.145 4.145 14 H 0.125 0.875 15 C -0.128 4.128 16 C -0.169 4.169 17 C -0.174 4.174 18 C -0.044 4.044 19 N -0.379 5.379 20 C 0.310 3.690 21 O -0.446 6.446 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.105 0.895 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.125 7.639 6.714 10.640 hybrid contribution 0.177 0.273 -0.499 0.596 sum -2.948 7.913 6.215 10.484 Atomic orbital electron populations 1.22325 1.00925 0.98776 1.00311 1.20799 0.89561 0.86688 1.01111 1.43879 1.73743 1.11440 1.00928 1.18949 1.30447 0.97429 0.92206 0.92370 1.25280 0.95739 0.98052 0.99196 1.70019 1.31687 1.18358 1.32369 0.86417 0.77355 0.78456 0.85645 1.20059 1.21672 1.21534 1.21763 0.91013 0.97598 0.88785 1.22470 1.01728 1.02450 0.87813 0.87536 1.21018 0.96622 0.93142 1.02061 1.21306 1.01990 0.96798 0.96842 1.21786 0.98887 0.98708 0.98054 1.22428 0.95556 0.89289 0.97129 1.45904 1.56542 1.25918 1.09491 1.21236 0.75905 0.79771 0.92128 1.90667 1.46993 1.38997 1.67970 0.93217 0.94714 0.94913 0.89490 0.96091 0.93575 0.94897 0.90340 0.89737 0.93933 0.89342 0.92612 0.91303 0.92096 0.90610 0.87546 0.77569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.23 37.16 0.38 -2.85 16 2 C 0.14 3.35 5.94 -4.04 -0.02 3.32 16 3 N -0.58 -13.45 2.34 -173.23 -0.40 -13.86 16 4 C -0.26 -6.52 9.22 -15.06 -0.14 -6.66 16 5 H 0.06 1.44 7.83 -52.49 -0.41 1.03 16 6 C 0.02 0.49 4.93 -17.43 -0.09 0.40 16 7 N -0.88 -24.44 11.65 55.49 0.65 -23.79 16 8 Si 0.89 20.63 29.59 -169.99 -5.03 15.59 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.13 2.62 3.33 -4.04 -0.01 2.61 16 13 C -0.12 -2.41 2.84 -91.39 -0.26 -2.67 16 14 H 0.11 2.58 8.03 -51.93 -0.42 2.17 16 15 C -0.09 -1.65 5.48 -27.31 -0.15 -1.80 16 16 C -0.13 -1.99 5.19 -27.97 -0.15 -2.13 16 17 C -0.14 -1.63 5.74 -27.36 -0.16 -1.79 16 18 C 0.08 0.95 6.36 -3.67 -0.02 0.92 16 19 N -0.73 -10.45 5.28 -59.92 -0.32 -10.76 16 20 C 0.52 9.92 6.42 -11.28 -0.07 9.85 16 21 O -0.57 -12.96 17.92 5.55 0.10 -12.86 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.09 2.27 5.78 -51.93 -0.30 1.97 16 26 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.03 0.62 7.36 -51.93 -0.38 0.24 16 29 H 0.08 1.39 2.77 -51.93 -0.14 1.25 16 30 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 32 H 0.09 1.45 5.23 -51.93 -0.27 1.18 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 1.41 3.62 -51.93 -0.19 1.22 16 38 H 0.39 4.89 8.91 -40.82 -0.36 4.53 16 LS Contribution 292.63 15.07 4.41 4.41 Total: -1.00 -29.57 292.63 -7.10 -36.67 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.82 Total: 5.38 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.69 Total: -0.79 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.07 Total: -48.41 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.10 Total: -12.86 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.57 -7.10 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721128720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.012 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds