Wall clock time and date at job start Mon Mar 30 2020 03:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47152 * 2 1 4 4 C 1.36933 * 120.00283 * 264.47432 * 3 2 1 5 5 H 1.08000 * 120.00358 * 138.97136 * 4 3 2 6 6 C 1.38812 * 119.99939 * 318.96910 * 4 3 2 7 7 N 1.31618 * 120.00161 * 341.16814 * 6 4 3 8 8 Si 1.86801 * 120.00193 * 161.17252 * 6 4 3 9 9 H 1.48500 * 109.46783 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47375 * 119.99765 * 8 6 4 11 11 H 1.48505 * 109.46882 * 239.99832 * 8 6 4 12 12 C 1.46505 * 119.99646 * 84.47229 * 3 2 1 13 13 C 1.53001 * 109.47279 * 90.11363 * 12 3 2 14 14 H 1.09001 * 109.79297 * 331.09092 * 13 12 3 15 15 C 1.53059 * 109.63248 * 91.58855 * 13 12 3 16 16 C 1.51794 * 110.74785 * 34.78418 * 15 13 12 17 17 C 1.51771 * 113.81162 * 66.80993 * 16 15 13 18 18 C 1.52994 * 110.88154 * 293.00385 * 17 16 15 19 19 N 1.47191 * 108.80252 * 86.37972 * 18 17 16 20 20 C 1.33310 * 120.47795 * 288.35113 * 19 18 17 21 21 O 1.21284 * 119.90764 * 180.14156 * 20 19 18 22 22 H 1.09000 * 109.46898 * 60.00054 * 1 2 3 23 23 H 1.09004 * 109.46634 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46880 * 299.99502 * 1 2 3 25 25 H 1.09004 * 109.47190 * 240.00092 * 2 1 3 26 26 H 1.08997 * 109.47633 * 120.00498 * 2 1 3 27 27 H 0.96997 * 120.00518 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47079 * 330.11151 * 12 3 2 29 29 H 1.09002 * 109.46745 * 210.11207 * 12 3 2 30 30 H 1.08995 * 109.22464 * 274.45575 * 15 13 12 31 31 H 1.09000 * 109.22288 * 155.10756 * 15 13 12 32 32 H 1.09006 * 108.61090 * 305.69085 * 16 15 13 33 33 H 1.09002 * 108.50719 * 187.85347 * 16 15 13 34 34 H 1.09000 * 109.19730 * 172.64485 * 17 16 15 35 35 H 1.08999 * 109.19507 * 53.36632 * 17 16 15 36 36 H 1.08997 * 109.60637 * 206.21491 * 18 17 16 37 37 H 1.08996 * 109.60103 * 326.54492 * 18 17 16 38 38 H 0.96998 * 119.78737 * 108.11549 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3542 1.9887 -1.1803 5 1 2.0822 3.0194 -1.3538 6 6 3.0445 1.2798 -2.1539 7 7 3.6950 0.1820 -1.8317 8 14 3.0501 1.8840 -3.9216 9 1 2.2496 3.1308 -4.0210 10 1 4.4464 2.1564 -4.3472 11 1 2.4581 0.8446 -4.8017 12 6 2.1473 2.1125 1.2629 13 6 3.5468 1.8908 1.8401 14 1 3.9262 0.9187 1.5250 15 6 4.4867 2.9939 1.3480 16 6 3.7464 4.3127 1.2177 17 6 3.2844 4.8895 2.5433 18 6 2.2029 4.0098 3.1735 19 7 2.8529 2.9497 3.9609 20 6 3.4886 1.9485 3.3521 21 8 4.0185 1.0790 4.0110 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.1771 -0.3136 -2.5121 28 1 1.4010 1.7506 1.9701 29 1 1.9924 3.1765 1.0840 30 1 4.8924 2.7127 0.3762 31 1 5.3057 3.1108 2.0578 32 1 2.8745 4.1608 0.5814 33 1 4.4065 5.0338 0.7355 34 1 2.8822 5.8891 2.3785 35 1 4.1348 4.9537 3.2221 36 1 1.5728 4.6152 3.8251 37 1 1.5934 3.5613 2.3890 38 1 2.8217 2.9812 4.9299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721128720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:02 Heat of formation + Delta-G solvation = -27.278608 kcal Electronic energy + Delta-G solvation = -18810.390209 eV Core-core repulsion = 16073.986062 eV Total energy + Delta-G solvation = -2736.404147 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63687 -38.47909 -37.11240 -34.77177 -33.48089 -32.34971 -30.70638 -28.60748 -26.14022 -24.98805 -24.82606 -22.35804 -21.12542 -20.02579 -18.62945 -18.18744 -17.28051 -16.62970 -16.40558 -15.98949 -15.46595 -15.02983 -14.79395 -14.67218 -14.31101 -14.05089 -13.71470 -13.53077 -13.10659 -12.82555 -12.60531 -12.54291 -12.50672 -12.28230 -11.96315 -11.81681 -11.56640 -11.43084 -11.41887 -10.90107 -10.62727 -10.44580 -9.95440 -8.44708 -7.75717 -5.41256 1.47667 1.52392 1.60656 1.68694 2.46476 2.55226 3.33670 3.49862 3.88160 3.99921 4.03748 4.11357 4.34058 4.46784 4.55127 4.59575 4.70723 4.77888 4.78680 4.93165 4.95851 5.02245 5.11720 5.18523 5.23461 5.26084 5.34806 5.49183 5.51625 5.66982 5.75900 5.84724 6.03494 6.31684 6.55497 7.23604 7.32440 7.89405 8.47882 9.21961 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.009073 C = 0.008034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.027883 B = 3085.198256 C = 3484.191542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.143 3.857 3 N -0.593 5.593 4 C -0.251 4.251 5 H 0.068 0.932 6 C -0.033 4.033 7 N -0.921 5.921 8 Si 0.950 3.050 9 H -0.259 1.259 10 H -0.297 1.297 11 H -0.297 1.297 12 C 0.140 3.860 13 C -0.115 4.115 14 H 0.050 0.950 15 C -0.085 4.085 16 C -0.127 4.127 17 C -0.130 4.130 18 C 0.075 3.925 19 N -0.705 5.705 20 C 0.524 3.476 21 O -0.614 6.614 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.006 0.994 27 H 0.247 0.753 28 H 0.041 0.959 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 11.229 7.711 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 N -0.314 5.314 4 C -0.381 4.381 5 H 0.085 0.915 6 C -0.231 4.231 7 N -0.565 5.565 8 Si 0.779 3.221 9 H -0.183 1.183 10 H -0.224 1.224 11 H -0.224 1.224 12 C 0.014 3.986 13 C -0.140 4.140 14 H 0.069 0.931 15 C -0.123 4.123 16 C -0.164 4.164 17 C -0.168 4.168 18 C -0.047 4.047 19 N -0.355 5.355 20 C 0.311 3.689 21 O -0.497 6.497 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.005 10.710 7.725 14.121 hybrid contribution 0.751 -0.639 -0.745 1.236 sum -4.253 10.070 6.980 12.970 Atomic orbital electron populations 1.22116 0.97620 1.00235 1.00781 1.20702 0.92096 0.86650 0.98838 1.44101 1.73965 1.11396 1.01937 1.19233 1.28680 0.97534 0.92702 0.91469 1.25942 0.96125 0.98509 1.02512 1.70177 1.33394 1.19991 1.32914 0.85494 0.76842 0.78241 0.81564 1.18297 1.22447 1.22386 1.21949 0.90596 0.98715 0.87309 1.22211 1.02232 1.00205 0.89329 0.93131 1.20937 0.96816 0.94709 0.99818 1.21260 1.01194 0.94903 0.99030 1.21768 0.99036 1.00162 0.95801 1.22685 0.95693 0.88683 0.97674 1.45769 1.54459 1.24814 1.10507 1.20921 0.76262 0.80439 0.91302 1.90646 1.49429 1.41181 1.68465 0.93738 0.92844 0.93220 0.92811 0.97522 0.94396 0.94055 0.87560 0.93531 0.93727 0.90521 0.91351 0.87553 0.91891 0.85751 0.88737 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.67 10.23 71.98 0.74 -4.93 16 2 C 0.14 6.80 5.94 86.38 0.51 7.31 16 3 N -0.59 -27.77 2.34 -701.99 -1.64 -29.41 16 4 C -0.25 -12.58 9.22 84.03 0.77 -11.80 16 5 H 0.07 3.23 7.83 -2.91 -0.02 3.20 16 6 C -0.03 -1.78 4.93 84.86 0.42 -1.36 16 7 N -0.92 -53.37 11.65 21.65 0.25 -53.12 16 8 Si 0.95 42.94 29.59 68.60 2.03 44.97 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 12 C 0.14 5.33 3.33 86.38 0.29 5.62 16 13 C -0.12 -4.72 2.84 -11.29 -0.03 -4.75 16 14 H 0.05 2.63 8.03 -2.39 -0.02 2.61 16 15 C -0.08 -3.13 5.48 30.22 0.17 -2.96 16 16 C -0.13 -3.49 5.19 29.79 0.15 -3.34 16 17 C -0.13 -2.50 5.74 30.19 0.17 -2.32 16 18 C 0.07 1.42 6.36 86.25 0.55 1.97 16 19 N -0.70 -18.20 5.28 -462.69 -2.44 -20.64 16 20 C 0.52 19.73 6.42 88.11 0.57 20.29 16 21 O -0.61 -28.60 17.92 -3.04 -0.05 -28.66 16 22 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.05 2.93 5.78 -2.38 -0.01 2.92 16 26 H 0.01 0.31 8.11 -2.39 -0.02 0.29 16 27 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.04 1.50 7.36 -2.39 -0.02 1.48 16 29 H 0.11 3.51 2.77 -2.39 -0.01 3.50 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.59 7.86 -2.39 -0.02 1.57 16 32 H 0.08 2.31 5.23 -2.38 -0.01 2.30 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.26 8.05 -2.39 -0.02 1.24 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 2.10 3.62 -2.39 -0.01 2.09 16 38 H 0.40 8.75 8.91 -92.71 -0.83 7.92 16 Total: -1.00 -67.91 292.63 2.68 -65.23 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.23 Total: 17.90 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.31 Total: 3.73 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.83 Total: -103.17 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.91 2.68 -65.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721128720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.951 kcal (2) G-P(sol) polarization free energy of solvation -67.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds