Wall clock time and date at job start Mon Mar 30 2020 03:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.46805 * 2 1 4 4 C 1.48556 * 110.99844 * 74.58493 * 3 2 1 5 5 C 1.54383 * 104.59364 * 159.03939 * 4 3 2 6 6 H 1.09004 * 110.41025 * 217.20546 * 5 4 3 7 7 N 1.46498 * 110.32720 * 95.03934 * 5 4 3 8 8 C 1.34777 * 119.99828 * 89.08456 * 7 5 4 9 9 O 1.21693 * 120.00014 * 0.28042 * 8 7 5 10 10 C 1.46373 * 120.00147 * 180.27610 * 8 7 5 11 11 H 1.08002 * 120.00141 * 0.02562 * 10 8 7 12 12 C 1.40050 * 120.00087 * 179.97438 * 10 8 7 13 13 N 1.30674 * 120.00151 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99913 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47191 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46768 * 120.00068 * 14 12 10 17 17 H 1.48498 * 109.47283 * 240.00320 * 14 12 10 18 18 C 1.54256 * 105.06099 * 336.14360 * 5 4 3 19 19 C 1.52999 * 110.32422 * 118.89639 * 18 5 4 20 20 C 1.53001 * 110.32781 * 241.10722 * 18 5 4 21 21 C 1.48566 * 110.99569 * 190.00076 * 3 2 1 22 22 H 1.08993 * 109.46982 * 60.00153 * 1 2 3 23 23 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46830 * 299.99845 * 1 2 3 25 25 H 1.09001 * 109.46974 * 239.99820 * 2 1 3 26 26 H 1.08996 * 109.47198 * 120.00311 * 2 1 3 27 27 H 1.09000 * 110.41546 * 40.25833 * 4 3 2 28 28 H 1.09000 * 110.41065 * 277.81625 * 4 3 2 29 29 H 0.97001 * 120.00384 * 269.36903 * 7 5 4 30 30 H 0.96991 * 119.99824 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47057 * 60.00024 * 19 18 5 32 32 H 1.09003 * 109.47462 * 180.02562 * 19 18 5 33 33 H 1.09000 * 109.47508 * 299.99988 * 19 18 5 34 34 H 1.09000 * 109.46944 * 59.99889 * 20 18 5 35 35 H 1.08998 * 109.47251 * 180.02562 * 20 18 5 36 36 H 1.09001 * 109.46768 * 300.00266 * 20 18 5 37 37 H 1.09000 * 110.41126 * 82.18238 * 21 3 2 38 38 H 1.08995 * 110.41207 * 319.73972 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8495 2.0098 1.3370 5 6 2.8501 3.1854 1.3472 6 1 3.2986 3.2944 2.3347 7 7 2.1801 4.4274 0.9538 8 6 1.5944 5.2022 1.8882 9 8 1.6265 4.8728 3.0592 10 6 0.9197 6.4401 1.4944 11 1 0.8908 6.7324 0.4551 12 6 0.3106 7.2450 2.4653 13 7 0.3450 6.8912 3.7228 14 14 -0.5498 8.8251 1.9629 15 1 -0.4476 8.9981 0.4916 16 1 -1.9806 8.7556 2.3544 17 1 0.0942 9.9773 2.6431 18 6 3.9259 2.8051 0.3092 19 6 3.9674 3.8401 -0.8168 20 6 5.2963 2.6934 0.9806 21 6 3.4849 1.4317 -0.2409 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0934 1.2962 2.1240 28 1 0.8304 2.3770 1.4581 29 1 2.1544 4.6900 0.0204 30 1 -0.0765 7.4488 4.3952 31 1 4.2044 4.8196 -0.4014 32 1 4.7309 3.5580 -1.5418 33 1 2.9960 3.8799 -1.3097 34 1 5.2606 1.9257 1.7535 35 1 6.0451 2.4249 0.2355 36 1 5.5592 3.6505 1.4310 37 1 3.6971 1.3635 -1.3078 38 1 3.9847 0.6275 0.2991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722250899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:55 Heat of formation + Delta-G solvation = -39.139312 kcal Electronic energy + Delta-G solvation = -18166.510330 eV Core-core repulsion = 15429.591864 eV Total energy + Delta-G solvation = -2736.918466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.65531 -36.73108 -34.83183 -32.60985 -31.74397 -30.41579 -28.11815 -27.03424 -25.78895 -24.80228 -22.48555 -20.69447 -19.54875 -18.41855 -17.17074 -15.68077 -15.50555 -15.18569 -14.64622 -14.05549 -13.99005 -13.43104 -13.04858 -12.88731 -12.61790 -12.34349 -12.11114 -11.95293 -11.81810 -11.60427 -11.28940 -11.17170 -11.05640 -10.85001 -10.63298 -10.42971 -10.40852 -10.34342 -10.16342 -10.03738 -8.81273 -8.21660 -7.53803 -7.37809 -6.13219 -4.57798 3.15962 3.24253 3.28842 4.15036 4.24192 4.62555 4.76155 4.85617 5.02520 5.22532 5.24466 5.39746 5.59300 5.62005 5.67476 5.74275 5.77530 5.85519 5.88998 5.94937 6.02264 6.13172 6.15597 6.19989 6.26657 6.34575 6.42224 6.53459 6.62380 6.71190 7.15242 7.30608 7.48817 8.03359 8.22559 8.42220 9.08471 9.64038 10.66245 10.86215 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.006775 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.722943 B = 4131.561075 C = 4578.676819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.508 5.508 4 C 0.025 3.975 5 C 0.163 3.837 6 H 0.083 0.917 7 N -0.753 5.753 8 C 0.555 3.445 9 O -0.584 6.584 10 C -0.544 4.544 11 H 0.067 0.933 12 C 0.088 3.912 13 N -0.769 5.769 14 Si 0.905 3.095 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.135 4.135 21 C 0.042 3.958 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.384 0.616 30 H 0.266 0.734 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -9.772 -8.460 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.232 5.232 4 C -0.104 4.104 5 C 0.055 3.945 6 H 0.101 0.899 7 N -0.409 5.409 8 C 0.359 3.641 9 O -0.467 6.467 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.131 4.131 13 N -0.398 5.398 14 Si 0.730 3.270 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.079 4.079 19 C -0.190 4.190 20 C -0.193 4.193 21 C -0.086 4.086 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.219 0.781 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.933 -9.691 -7.818 13.393 hybrid contribution -0.077 0.311 -0.010 0.321 sum 4.855 -9.380 -7.828 13.146 Atomic orbital electron populations 1.21711 0.94846 1.00852 1.02889 1.22204 0.96525 0.89926 1.00092 1.65417 1.13217 1.15845 1.28721 1.23693 1.02267 0.96265 0.88224 1.21218 0.90492 0.85504 0.97237 0.89888 1.46312 1.61214 1.22753 1.10649 1.18227 0.78046 0.83602 0.84269 1.90589 1.63272 1.74496 1.18344 1.20928 1.36758 1.05977 0.94495 0.91514 1.25694 0.94700 0.98329 0.94405 1.70035 1.33868 1.35028 1.00880 0.86362 0.79231 0.81833 0.79591 1.18792 1.20239 1.20238 1.21566 0.95305 0.94849 0.96198 1.21740 1.01545 0.98808 0.96913 1.21847 0.95467 1.02108 0.99888 1.23197 0.88746 0.96046 1.00606 0.91932 0.92863 0.92499 0.91449 0.95079 0.94442 0.89496 0.78093 0.92303 0.91741 0.93323 0.91738 0.92888 0.92831 0.92060 0.90509 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.03 37.16 0.37 -1.47 16 2 C 0.04 0.53 5.55 -3.82 -0.02 0.51 16 3 N -0.51 -7.83 5.34 -229.96 -1.23 -9.06 16 4 C 0.02 0.45 5.63 -2.18 -0.01 0.44 16 5 C 0.16 3.19 3.04 -66.55 -0.20 2.99 16 6 H 0.08 1.83 7.13 -51.93 -0.37 1.46 16 7 N -0.75 -16.98 4.51 -53.87 -0.24 -17.22 16 8 C 0.55 15.79 7.75 -12.99 -0.10 15.69 16 9 O -0.58 -18.85 14.67 5.20 0.08 -18.77 16 10 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16 11 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 12 C 0.09 2.48 5.50 -17.36 -0.10 2.39 16 13 N -0.77 -23.26 11.83 55.55 0.66 -22.61 16 14 Si 0.90 20.40 29.56 -169.99 -5.02 15.37 16 15 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 C -0.08 -1.17 1.03 -153.13 -0.16 -1.33 16 19 C -0.13 -1.89 7.10 37.16 0.26 -1.62 16 20 C -0.14 -1.79 8.25 37.16 0.31 -1.48 16 21 C 0.04 0.57 5.55 -2.18 -0.01 0.56 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.81 7.47 -51.93 -0.39 0.42 16 25 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 26 H 0.03 0.40 7.77 -51.93 -0.40 -0.01 16 27 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 28 H 0.09 1.86 7.76 -51.93 -0.40 1.46 16 29 H 0.38 7.92 5.89 -40.82 -0.24 7.68 16 30 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 31 H 0.06 1.00 7.75 -51.93 -0.40 0.59 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.96 6.97 -51.93 -0.36 0.60 16 34 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 38 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -32.90 303.26 -7.47 -40.37 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.28 Total: 6.54 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 0.00 Total: 0.80 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.81 Total: -48.89 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.08 Total: -18.77 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.90 -7.47 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722250899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.228 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds