Wall clock time and date at job start Mon Mar 30 2020 03:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.46805 * 2 1 4 4 C 1.48556 * 110.99844 * 74.58493 * 3 2 1 5 5 C 1.54383 * 104.59364 * 159.03939 * 4 3 2 6 6 H 1.09004 * 110.41025 * 217.20546 * 5 4 3 7 7 N 1.46498 * 110.32720 * 95.03934 * 5 4 3 8 8 C 1.34777 * 119.99828 * 89.08456 * 7 5 4 9 9 O 1.21693 * 120.00014 * 0.28042 * 8 7 5 10 10 C 1.46373 * 120.00147 * 180.27610 * 8 7 5 11 11 H 1.08002 * 120.00141 * 0.02562 * 10 8 7 12 12 C 1.40050 * 120.00087 * 179.97438 * 10 8 7 13 13 N 1.30674 * 120.00151 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99913 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47191 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46768 * 120.00068 * 14 12 10 17 17 H 1.48498 * 109.47283 * 240.00320 * 14 12 10 18 18 C 1.54256 * 105.06099 * 336.14360 * 5 4 3 19 19 C 1.52999 * 110.32422 * 118.89639 * 18 5 4 20 20 C 1.53001 * 110.32781 * 241.10722 * 18 5 4 21 21 C 1.48566 * 110.99569 * 190.00076 * 3 2 1 22 22 H 1.08993 * 109.46982 * 60.00153 * 1 2 3 23 23 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46830 * 299.99845 * 1 2 3 25 25 H 1.09001 * 109.46974 * 239.99820 * 2 1 3 26 26 H 1.08996 * 109.47198 * 120.00311 * 2 1 3 27 27 H 1.09000 * 110.41546 * 40.25833 * 4 3 2 28 28 H 1.09000 * 110.41065 * 277.81625 * 4 3 2 29 29 H 0.97001 * 120.00384 * 269.36903 * 7 5 4 30 30 H 0.96991 * 119.99824 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47057 * 60.00024 * 19 18 5 32 32 H 1.09003 * 109.47462 * 180.02562 * 19 18 5 33 33 H 1.09000 * 109.47508 * 299.99988 * 19 18 5 34 34 H 1.09000 * 109.46944 * 59.99889 * 20 18 5 35 35 H 1.08998 * 109.47251 * 180.02562 * 20 18 5 36 36 H 1.09001 * 109.46768 * 300.00266 * 20 18 5 37 37 H 1.09000 * 110.41126 * 82.18238 * 21 3 2 38 38 H 1.08995 * 110.41207 * 319.73972 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8495 2.0098 1.3370 5 6 2.8501 3.1854 1.3472 6 1 3.2986 3.2944 2.3347 7 7 2.1801 4.4274 0.9538 8 6 1.5944 5.2022 1.8882 9 8 1.6265 4.8728 3.0592 10 6 0.9197 6.4401 1.4944 11 1 0.8908 6.7324 0.4551 12 6 0.3106 7.2450 2.4653 13 7 0.3450 6.8912 3.7228 14 14 -0.5498 8.8251 1.9629 15 1 -0.4476 8.9981 0.4916 16 1 -1.9806 8.7556 2.3544 17 1 0.0942 9.9773 2.6431 18 6 3.9259 2.8051 0.3092 19 6 3.9674 3.8401 -0.8168 20 6 5.2963 2.6934 0.9806 21 6 3.4849 1.4317 -0.2409 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0934 1.2962 2.1240 28 1 0.8304 2.3770 1.4581 29 1 2.1544 4.6900 0.0204 30 1 -0.0765 7.4488 4.3952 31 1 4.2044 4.8196 -0.4014 32 1 4.7309 3.5580 -1.5418 33 1 2.9960 3.8799 -1.3097 34 1 5.2606 1.9257 1.7535 35 1 6.0451 2.4249 0.2355 36 1 5.5592 3.6505 1.4310 37 1 3.6971 1.3635 -1.3078 38 1 3.9847 0.6275 0.2991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722250899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:55 Heat of formation + Delta-G solvation = -63.711776 kcal Electronic energy + Delta-G solvation = -18167.575872 eV Core-core repulsion = 15429.591864 eV Total energy + Delta-G solvation = -2737.984008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07104 -38.74050 -36.15007 -34.68814 -33.65972 -31.59573 -29.68268 -28.42316 -27.61361 -25.98251 -23.91053 -22.11077 -21.28520 -19.95277 -19.04601 -17.47845 -17.13662 -16.66095 -16.01828 -15.86592 -15.20565 -14.72701 -14.62426 -14.42989 -14.23796 -13.73772 -13.52448 -13.41496 -13.11001 -12.94283 -12.81923 -12.73828 -12.54198 -12.39106 -12.31123 -11.99362 -11.82392 -11.67994 -11.57212 -11.40700 -10.93486 -9.81154 -9.44609 -9.34482 -8.27180 -6.83000 1.39574 1.39824 1.57666 2.25409 2.49394 3.03940 3.17236 3.51941 3.56243 3.84777 4.05736 4.14030 4.25587 4.37693 4.40116 4.44433 4.59868 4.66940 4.78777 4.82065 4.85785 4.89372 4.93710 5.01903 5.06301 5.11118 5.25919 5.32467 5.33426 5.36107 5.45598 5.82689 5.94209 6.14592 6.28312 6.40162 6.88977 7.61410 8.53603 8.71096 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.006775 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.722943 B = 4131.561075 C = 4578.676819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.515 5.515 4 C 0.036 3.964 5 C 0.154 3.846 6 H 0.048 0.952 7 N -0.739 5.739 8 C 0.540 3.460 9 O -0.634 6.634 10 C -0.574 4.574 11 H 0.083 0.917 12 C 0.029 3.971 13 N -0.823 5.823 14 Si 0.996 3.004 15 H -0.248 1.248 16 H -0.269 1.269 17 H -0.267 1.267 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.132 4.132 21 C 0.048 3.952 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.395 0.605 30 H 0.273 0.727 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -10.228 -11.085 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 N -0.240 5.240 4 C -0.094 4.094 5 C 0.046 3.954 6 H 0.066 0.934 7 N -0.394 5.394 8 C 0.343 3.657 9 O -0.521 6.521 10 C -0.611 4.611 11 H 0.101 0.899 12 C -0.186 4.186 13 N -0.452 5.452 14 Si 0.815 3.185 15 H -0.171 1.171 16 H -0.194 1.194 17 H -0.192 1.192 18 C -0.073 4.073 19 C -0.187 4.187 20 C -0.189 4.189 21 C -0.080 4.080 22 H 0.076 0.924 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.232 0.768 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.121 0.879 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.606 -10.184 -10.501 15.665 hybrid contribution -0.246 0.363 0.796 0.909 sum 5.360 -9.821 -9.704 14.811 Atomic orbital electron populations 1.21706 0.95034 1.02056 1.01303 1.22322 0.96432 0.88539 1.01585 1.65388 1.14947 1.17594 1.26059 1.23353 0.99437 0.96129 0.90469 1.21403 0.92126 0.84522 0.97305 0.93426 1.45992 1.60075 1.23157 1.10188 1.18582 0.78267 0.84484 0.84324 1.90539 1.65256 1.75796 1.20542 1.21452 1.37381 1.06596 0.95652 0.89859 1.26949 0.95001 1.02622 0.93996 1.70200 1.35145 1.37222 1.02665 0.85001 0.77664 0.75844 0.79951 1.17065 1.19412 1.19231 1.21581 0.94511 0.96143 0.95074 1.21706 1.02244 0.97640 0.97091 1.21826 0.95074 1.01354 1.00687 1.23265 0.87287 0.95148 1.02260 0.92407 0.90282 0.95161 0.88617 0.94659 0.94264 0.93516 0.76838 0.91699 0.93611 0.89813 0.92503 0.92681 0.89508 0.93867 0.87876 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 10.03 71.98 0.72 -2.76 16 2 C 0.04 0.93 5.55 86.30 0.48 1.41 16 3 N -0.52 -15.15 5.34 -881.46 -4.71 -19.86 16 4 C 0.04 1.36 5.63 86.45 0.49 1.85 16 5 C 0.15 6.19 3.04 45.89 0.14 6.33 16 6 H 0.05 2.24 7.13 -2.38 -0.02 2.23 16 7 N -0.74 -34.59 4.51 -442.57 -2.00 -36.58 16 8 C 0.54 32.20 7.75 86.36 0.67 32.87 16 9 O -0.63 -43.45 14.67 -4.33 -0.06 -43.51 16 10 C -0.57 -33.56 9.54 24.83 0.24 -33.32 16 11 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 12 C 0.03 1.66 5.50 85.30 0.47 2.13 16 13 N -0.82 -51.53 11.83 21.84 0.26 -51.27 16 14 Si 1.00 42.05 29.56 68.60 2.03 44.08 16 15 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 18 C -0.07 -2.05 1.03 -51.29 -0.05 -2.10 16 19 C -0.13 -3.42 7.10 71.98 0.51 -2.91 16 20 C -0.13 -3.25 8.25 71.98 0.59 -2.66 16 21 C 0.05 1.15 5.55 86.45 0.48 1.63 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.03 0.87 7.47 -2.39 -0.02 0.86 16 25 H 0.10 1.79 8.08 -2.39 -0.02 1.77 16 26 H 0.04 0.82 7.77 -2.39 -0.02 0.80 16 27 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 28 H 0.05 2.13 7.76 -2.39 -0.02 2.11 16 29 H 0.39 16.58 5.89 -92.71 -0.55 16.04 16 30 H 0.27 15.45 8.29 -92.71 -0.77 14.69 16 31 H 0.04 1.37 7.75 -2.39 -0.02 1.35 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.58 6.97 -2.39 -0.02 1.57 16 34 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 2.02 7.86 -2.39 -0.02 2.01 16 38 H 0.06 1.20 7.68 -2.39 -0.02 1.18 16 Total: -1.00 -75.75 303.26 0.74 -75.01 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.48 Total: 29.67 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 4.73 Total: 2.46 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -6.44 Total: -107.72 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.06 Total: -43.51 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -75.75 0.74 -75.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722250899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.298 kcal (2) G-P(sol) polarization free energy of solvation -75.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds