Wall clock time and date at job start Mon Mar 30 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99221 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.52993 * 109.46779 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.47136 * 179.97438 * 14 13 12 16 16 H 1.09007 * 110.85596 * 305.70672 * 15 14 13 17 17 C 1.54634 * 110.96536 * 69.48933 * 15 14 13 18 18 C 1.51344 * 104.16132 * 142.89562 * 17 15 14 19 19 O 1.21285 * 124.92620 * 163.73667 * 18 17 15 20 20 N 1.34418 * 110.13147 * 343.79871 * 18 17 15 21 21 C 1.46503 * 124.34757 * 179.54527 * 20 18 17 22 22 C 1.46760 * 111.30225 * 359.55853 * 20 18 17 23 23 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.00892 * 111.00195 * 321.05457 * 12 2 1 28 28 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 29 29 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 30 30 H 1.09000 * 109.47362 * 299.99526 * 14 13 12 31 31 H 1.09000 * 109.47454 * 60.00250 * 14 13 12 32 32 H 1.08993 * 110.48398 * 261.59612 * 17 15 14 33 33 H 1.08993 * 110.48508 * 24.24020 * 17 15 14 34 34 H 1.09000 * 109.46944 * 270.01931 * 21 20 18 35 35 H 1.08999 * 109.47059 * 30.02081 * 21 20 18 36 36 H 1.09002 * 109.46949 * 150.01973 * 21 20 18 37 37 H 1.08997 * 110.25174 * 258.01747 * 22 20 18 38 38 H 1.09006 * 110.24261 * 136.01807 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0196 -0.6927 -1.1994 13 6 2.0825 0.2224 -2.3469 14 6 2.5962 -0.5332 -3.5741 15 6 2.6611 0.4197 -4.7695 16 1 1.6980 0.9033 -4.9329 17 6 3.7819 1.4682 -4.5811 18 6 4.3526 1.6539 -5.9705 19 8 5.0541 2.5815 -6.3147 20 7 3.9678 0.6423 -6.7676 21 6 4.3360 0.5170 -8.1801 22 6 3.1312 -0.3202 -6.0414 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.9026 -0.5281 4.4376 27 1 1.4495 -1.4980 -1.4099 28 1 1.0871 0.6161 -2.5526 29 1 2.7589 1.0460 -2.1183 30 1 3.5917 -0.9265 -3.3682 31 1 1.9202 -1.3570 -3.8029 32 1 3.3686 2.4057 -4.2093 33 1 4.5466 1.0913 -3.9019 34 1 3.5876 1.0153 -8.7962 35 1 5.3089 0.9803 -8.3444 36 1 4.3856 -0.5378 -8.4504 37 1 3.7156 -1.1999 -5.7718 38 1 2.2733 -0.6082 -6.6491 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723360211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:27 Heat of formation + Delta-G solvation = -59.925245 kcal Electronic energy + Delta-G solvation = -17136.798193 eV Core-core repulsion = 14398.978381 eV Total energy + Delta-G solvation = -2737.819812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42797 -38.45719 -37.52986 -35.36318 -34.12489 -31.91568 -29.46619 -28.25341 -27.11198 -26.54056 -23.49243 -22.08215 -21.35084 -20.52727 -18.74868 -17.82416 -17.36273 -16.83498 -16.47908 -16.13132 -15.60159 -15.20182 -14.76394 -14.62504 -14.56731 -14.28612 -13.86647 -13.74138 -13.32860 -13.22013 -13.07492 -12.91242 -12.78813 -12.50436 -11.98712 -11.92727 -11.74445 -11.58944 -11.37074 -11.09506 -10.85406 -10.72130 -9.72189 -8.94198 -8.24860 -6.26872 1.30986 1.37267 1.47009 1.50569 2.09265 2.34220 3.09785 3.31915 3.44516 3.63162 3.97710 4.12303 4.34119 4.39774 4.45451 4.50020 4.51842 4.59516 4.69375 4.69908 4.74803 4.82906 4.84868 4.90388 4.92809 4.99428 5.13462 5.31542 5.44246 5.47905 5.57563 5.71119 6.06253 6.08297 6.74334 6.80488 6.88337 7.10689 7.38667 8.92679 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046173 B = 0.004196 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.270359 B = 6671.733314 C = 6821.933684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.185 3.815 3 H 0.025 0.975 4 C -0.503 4.503 5 H 0.036 0.964 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.302 1.302 11 H -0.250 1.250 12 N -0.687 5.687 13 C 0.055 3.945 14 C -0.093 4.093 15 C -0.085 4.085 16 H 0.103 0.897 17 C -0.152 4.152 18 C 0.505 3.495 19 O -0.590 6.590 20 N -0.623 5.623 21 C 0.089 3.911 22 C 0.107 3.893 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.264 0.736 27 H 0.338 0.662 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 0.940 -22.673 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.076 3.924 3 H 0.043 0.957 4 C -0.542 4.542 5 H 0.054 0.946 6 C -0.190 4.190 7 N -0.594 5.594 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.230 1.230 11 H -0.174 1.174 12 N -0.318 5.318 13 C -0.074 4.074 14 C -0.132 4.132 15 C -0.105 4.105 16 H 0.121 0.879 17 C -0.192 4.192 18 C 0.295 3.705 19 O -0.471 6.471 20 N -0.356 5.356 21 C -0.052 4.052 22 C -0.015 4.015 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.893 1.459 -22.628 22.754 hybrid contribution -1.030 0.675 0.613 1.376 sum -2.924 2.134 -22.016 22.311 Atomic orbital electron populations 1.22707 0.99390 1.01474 0.99920 1.19400 0.90049 0.94002 0.88998 0.95684 1.21347 1.30209 1.12346 0.90317 0.94597 1.25833 0.97669 1.00061 0.95466 1.70055 1.48151 1.42681 0.98531 0.85803 0.79067 0.79987 0.77114 1.19245 1.22955 1.17441 1.60419 1.58157 1.09861 1.03339 1.22047 0.99196 0.95663 0.90523 1.21441 1.02752 0.97599 0.91360 1.22092 0.98599 0.95317 0.94453 0.87868 1.22503 1.00234 1.02606 0.93865 1.21464 0.79003 0.81004 0.89066 1.90674 1.40833 1.35194 1.80422 1.48405 1.51253 1.24363 1.11603 1.21710 1.00670 1.04016 0.78809 1.22386 0.95250 0.91410 0.92425 0.94918 0.91934 0.92472 0.92698 0.84380 0.94911 0.92602 0.91292 0.89534 0.88117 0.87630 0.91670 0.92380 0.88088 0.89493 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.81 8.64 71.98 0.62 -6.19 16 2 C 0.19 8.23 2.17 44.17 0.10 8.33 16 3 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 4 C -0.50 -28.53 9.42 25.60 0.24 -28.29 16 5 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 6 C 0.01 0.35 5.45 84.66 0.46 0.81 16 7 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 8 Si 0.95 44.65 24.37 68.60 1.67 46.32 16 9 H -0.27 -11.78 6.87 99.48 0.68 -11.09 16 10 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 11 H -0.25 -10.83 6.53 99.48 0.65 -10.18 16 12 N -0.69 -24.98 6.23 -495.43 -3.09 -28.07 16 13 C 0.05 1.47 5.36 86.30 0.46 1.93 16 14 C -0.09 -1.71 4.82 30.59 0.15 -1.56 16 15 C -0.09 -1.27 3.15 -9.73 -0.03 -1.30 16 16 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 17 C -0.15 -3.10 5.74 30.61 0.18 -2.92 16 18 C 0.51 12.69 8.02 87.92 0.71 13.40 16 19 O -0.59 -20.27 17.59 -3.05 -0.05 -20.32 16 20 N -0.62 -11.12 3.33 -842.81 -2.81 -13.93 16 21 C 0.09 1.20 10.96 127.77 1.40 2.60 16 22 C 0.11 1.27 6.91 86.83 0.60 1.87 16 23 H 0.03 1.34 3.27 -2.39 -0.01 1.33 16 24 H 0.06 1.96 7.45 -2.39 -0.02 1.95 16 25 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 26 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 27 H 0.34 11.22 8.47 -89.70 -0.76 10.46 16 28 H 0.03 0.80 7.44 -2.39 -0.02 0.78 16 29 H 0.06 1.62 7.54 -2.39 -0.02 1.61 16 30 H 0.07 1.41 8.01 -2.39 -0.02 1.40 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.11 2.26 7.81 -2.39 -0.02 2.24 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.98 7.92 -2.39 -0.02 0.96 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.91 7.89 -2.39 -0.02 0.89 16 38 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -74.07 302.64 1.10 -72.97 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.20 Total: 13.98 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.88 Total: -11.33 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -5.60 Total: -101.61 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Total: -74.07 1.10 -72.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723360211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.044 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds