Wall clock time and date at job start Mon Mar 30 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47203 * 2 1 4 4 C 1.50700 * 109.47420 * 120.00384 * 2 1 3 5 5 H 1.07994 * 120.00669 * 119.99593 * 4 2 1 6 6 C 1.37881 * 119.99756 * 300.00052 * 4 2 1 7 7 N 1.31512 * 120.00147 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 120.00013 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47011 * 90.00051 * 8 6 4 10 10 H 1.48497 * 109.47048 * 209.99940 * 8 6 4 11 11 H 1.48500 * 109.47066 * 330.00031 * 8 6 4 12 12 N 1.46908 * 109.47111 * 240.00084 * 2 1 3 13 13 C 1.46898 * 110.99526 * 85.00036 * 12 2 1 14 14 C 1.53004 * 109.46791 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47280 * 180.02562 * 14 13 12 16 16 H 1.08997 * 110.88590 * 51.18964 * 15 14 13 17 17 C 1.54633 * 110.97033 * 287.37937 * 15 14 13 18 18 C 1.51278 * 104.19843 * 217.08321 * 17 15 14 19 19 O 1.21276 * 124.94376 * 196.27099 * 18 17 15 20 20 N 1.34570 * 110.14029 * 16.32152 * 18 17 15 21 21 C 1.46494 * 124.43540 * 180.35815 * 20 18 17 22 22 C 1.46768 * 111.21385 * 0.29268 * 20 18 17 23 23 H 1.09003 * 109.47253 * 299.99988 * 1 2 3 24 24 H 1.09000 * 109.47298 * 59.99677 * 1 2 3 25 25 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 26 26 H 0.96999 * 119.99932 * 179.97438 * 7 6 4 27 27 H 1.00897 * 110.99772 * 208.95216 * 12 2 1 28 28 H 1.08998 * 109.47435 * 60.00305 * 13 12 2 29 29 H 1.08998 * 109.47756 * 299.99770 * 13 12 2 30 30 H 1.08998 * 109.46830 * 59.99998 * 14 13 12 31 31 H 1.08996 * 109.47326 * 300.00242 * 14 13 12 32 32 H 1.09002 * 110.48603 * 335.76112 * 17 15 14 33 33 H 1.08998 * 110.48250 * 98.27033 * 17 15 14 34 34 H 1.09003 * 109.46743 * 269.92783 * 21 20 18 35 35 H 1.08991 * 109.47134 * 29.92202 * 21 20 18 36 36 H 1.08998 * 109.47099 * 149.92886 * 21 20 18 37 37 H 1.09002 * 110.24468 * 224.04510 * 22 20 18 38 38 H 1.09002 * 110.24463 * 102.13267 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8744 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1773 1.4924 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5962 -0.5328 -3.5742 15 6 2.6622 0.4205 -4.7691 16 1 3.2066 1.3290 -4.5118 17 6 1.2450 0.7534 -5.2904 18 6 1.4096 0.8257 -6.7924 19 8 0.6135 1.3314 -7.5549 20 7 2.5673 0.2466 -7.1601 21 6 3.0423 0.1489 -8.5424 22 6 3.2940 -0.2738 -5.9960 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.9032 -0.5281 4.4375 27 1 2.9173 -1.1205 -1.0288 28 1 2.7588 1.0462 -2.1182 29 1 1.0871 0.6164 -2.5526 30 1 1.9201 -1.3566 -3.8030 31 1 3.5916 -0.9262 -3.3683 32 1 0.5440 -0.0367 -5.0210 33 1 0.9085 1.7117 -4.8948 34 1 2.6778 -0.7771 -8.9873 35 1 2.6702 0.9982 -9.1153 36 1 4.1322 0.1527 -8.5532 37 1 4.3521 -0.0222 -6.0685 38 1 3.1678 -1.3541 -5.9245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723360212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:29 Heat of formation + Delta-G solvation = -61.166548 kcal Electronic energy + Delta-G solvation = -17135.196757 eV Core-core repulsion = 14397.323118 eV Total energy + Delta-G solvation = -2737.873639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41732 -38.40287 -37.49349 -35.37219 -34.11415 -31.96603 -29.53634 -28.29372 -27.22073 -26.50515 -23.50140 -21.76147 -21.34608 -20.52917 -18.82650 -17.83186 -17.45940 -17.02689 -16.43812 -15.95715 -15.58156 -15.09304 -15.03152 -14.64508 -14.59733 -14.18938 -13.96422 -13.61086 -13.37756 -13.23391 -13.12466 -12.74708 -12.67323 -12.51966 -12.17123 -11.94664 -11.74581 -11.51315 -11.34493 -11.00725 -10.85381 -10.75854 -9.72473 -9.08016 -8.30554 -6.34736 1.32254 1.35990 1.46494 1.50492 2.09103 2.31593 3.05064 3.31735 3.44732 3.60951 3.96609 4.11085 4.33182 4.41821 4.46245 4.50554 4.57853 4.67850 4.69464 4.74810 4.76982 4.84653 4.88131 4.92320 4.98208 5.02199 5.10911 5.31120 5.44966 5.54101 5.57332 5.66595 6.02903 6.06025 6.55206 6.69028 6.89770 7.10558 7.32484 8.85789 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051335 B = 0.004196 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.308716 B = 6670.819181 C = 7032.817106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.185 3.815 3 H -0.004 1.004 4 C -0.524 4.524 5 H 0.043 0.957 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.251 1.251 12 N -0.684 5.684 13 C 0.054 3.946 14 C -0.093 4.093 15 C -0.087 4.087 16 H 0.099 0.901 17 C -0.150 4.150 18 C 0.506 3.494 19 O -0.589 6.589 20 N -0.624 5.624 21 C 0.089 3.911 22 C 0.107 3.893 23 H 0.028 0.972 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.266 0.734 27 H 0.337 0.663 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 2.787 -20.613 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 H 0.013 0.987 4 C -0.562 4.562 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.226 1.226 11 H -0.175 1.175 12 N -0.315 5.315 13 C -0.075 4.075 14 C -0.131 4.131 15 C -0.106 4.106 16 H 0.117 0.883 17 C -0.190 4.190 18 C 0.295 3.705 19 O -0.470 6.470 20 N -0.357 5.357 21 C -0.052 4.052 22 C -0.015 4.015 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.732 2.772 -21.095 21.451 hybrid contribution 0.242 0.956 0.890 1.328 sum 2.974 3.728 -20.205 20.760 Atomic orbital electron populations 1.21989 0.97535 1.00932 0.98795 1.19368 0.92668 0.92185 0.88299 0.98674 1.21449 1.31346 1.12700 0.90737 0.93912 1.25790 0.97217 0.99948 0.95442 1.70032 1.47609 1.42417 0.98611 0.85812 0.79181 0.79977 0.77144 1.19401 1.22650 1.17470 1.60470 1.32902 1.33291 1.04800 1.22083 1.00375 0.94054 0.91012 1.21437 1.02567 0.97469 0.91610 1.22083 0.94336 1.00021 0.94177 0.88306 1.22487 1.00040 1.05644 0.90799 1.21496 0.80761 0.76214 0.91993 1.90672 1.47583 1.48278 1.60469 1.48443 1.21315 1.57089 1.08888 1.21706 1.01470 1.02061 0.79938 1.22374 0.97392 0.99344 0.82387 0.95327 0.92488 0.93090 0.92482 0.84500 0.96001 0.91567 0.90642 0.90149 0.87107 0.88025 0.91967 0.92205 0.88064 0.87800 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 8.89 71.98 0.64 -4.99 16 2 C 0.18 8.29 2.19 44.17 0.10 8.39 16 3 H 0.00 -0.19 6.86 -2.39 -0.02 -0.21 16 4 C -0.52 -29.09 9.17 25.60 0.23 -28.85 16 5 H 0.04 2.61 7.86 -2.91 -0.02 2.58 16 6 C 0.01 0.79 5.45 84.66 0.46 1.25 16 7 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 8 Si 0.95 44.54 24.37 68.60 1.67 46.21 16 9 H -0.27 -12.04 6.87 99.48 0.68 -11.36 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 12 N -0.68 -25.10 6.30 -495.44 -3.12 -28.22 16 13 C 0.05 1.47 5.38 86.30 0.46 1.93 16 14 C -0.09 -1.72 4.83 30.59 0.15 -1.58 16 15 C -0.09 -1.31 3.12 -9.74 -0.03 -1.34 16 16 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 17 C -0.15 -2.88 5.89 30.59 0.18 -2.70 16 18 C 0.51 12.30 8.03 87.87 0.71 13.01 16 19 O -0.59 -19.66 17.60 -3.02 -0.05 -19.71 16 20 N -0.62 -11.00 3.34 -842.70 -2.81 -13.82 16 21 C 0.09 1.19 10.97 127.77 1.40 2.59 16 22 C 0.11 1.30 6.91 86.83 0.60 1.90 16 23 H 0.03 1.23 3.27 -2.39 -0.01 1.22 16 24 H 0.06 2.01 7.45 -2.39 -0.02 1.99 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.34 12.50 8.22 -89.70 -0.74 11.76 16 28 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 29 H 0.07 1.79 7.04 -2.39 -0.02 1.77 16 30 H 0.07 1.45 7.93 -2.39 -0.02 1.43 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.11 2.10 7.76 -2.39 -0.02 2.08 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.98 7.94 -2.39 -0.02 0.96 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.92 7.89 -2.39 -0.02 0.90 16 Total: -1.00 -71.15 302.48 1.10 -70.04 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.22 Total: 13.91 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.90 Total: -10.39 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -5.64 Total: -100.07 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.67 Total: 46.21 kcal Total: -71.15 1.10 -70.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723360212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.876 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds