Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.97232 * 330.18677 * 4 3 2 6 6 C 1.54283 * 109.98241 * 208.87147 * 4 3 2 7 7 C 1.54983 * 103.74816 * 217.53087 * 6 4 3 8 8 C 1.54887 * 102.33437 * 37.08602 * 7 6 4 9 9 C 1.51451 * 109.97938 * 91.45594 * 4 3 2 10 10 N 1.28006 * 126.34269 * 298.96179 * 9 4 3 11 11 N 1.40097 * 119.99749 * 180.02562 * 10 9 4 12 12 C 1.46499 * 119.99689 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47336 * 329.99767 * 12 11 10 14 14 C 1.53001 * 109.47545 * 90.00352 * 12 11 10 15 15 C 1.50707 * 109.46976 * 210.00086 * 12 11 10 16 16 H 1.08000 * 120.00007 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00057 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99941 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 119.99926 * 0.02562 * 17 15 12 20 20 H 1.48488 * 109.47444 * 89.99856 * 19 17 15 21 21 H 1.48503 * 109.47135 * 210.00030 * 19 17 15 22 22 H 1.48501 * 109.47166 * 329.99505 * 19 17 15 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.08995 * 110.56946 * 336.09356 * 6 4 3 29 29 H 1.08994 * 110.56583 * 98.96428 * 6 4 3 30 30 H 1.09003 * 110.83561 * 278.87334 * 7 6 4 31 31 H 1.09003 * 110.83450 * 155.29887 * 7 6 4 32 32 H 1.09002 * 110.44189 * 203.64037 * 8 7 6 33 33 H 1.09002 * 110.44382 * 81.11603 * 8 7 6 34 34 H 0.96999 * 120.00251 * 0.02562 * 11 10 9 35 35 H 1.08997 * 109.47281 * 59.99381 * 14 12 11 36 36 H 1.09001 * 109.47411 * 180.02562 * 14 12 11 37 37 H 1.09005 * 109.47002 * 299.99839 * 14 12 11 38 38 H 0.97001 * 119.99652 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8720 0.6035 0.5102 6 6 3.8559 2.7676 0.7007 7 6 5.0695 3.2535 -0.1318 8 6 4.6562 2.8695 -1.5743 9 6 3.9445 1.5368 -1.4221 10 7 3.8049 0.6435 -2.3282 11 7 4.3372 0.8537 -3.6070 12 6 4.1769 -0.1685 -4.6441 13 1 4.1315 -1.1535 -4.1796 14 6 2.8835 0.0898 -5.4195 15 6 5.3491 -0.1127 -5.5897 16 1 6.1346 0.6120 -5.4340 17 6 5.4187 -0.9868 -6.6537 18 7 6.4418 -0.9385 -7.4786 19 14 4.0598 -2.2399 -6.9236 20 1 3.0110 -1.6527 -7.7953 21 1 4.6241 -3.4497 -7.5742 22 1 3.4642 -2.6136 -5.6156 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0496 3.5003 0.6658 29 1 4.1522 2.5714 1.7311 30 1 5.9778 2.7284 0.1640 31 1 5.1964 4.3321 -0.0391 32 1 5.5375 2.7602 -2.2065 33 1 3.9799 3.6172 -1.9885 34 1 4.8117 1.6760 -3.8056 35 1 2.9289 1.0748 -5.8840 36 1 2.7641 -0.6710 -6.1908 37 1 2.0357 0.0495 -4.7355 38 1 6.4910 -1.5537 -8.2269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766453203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -15.639527 kcal Electronic energy + Delta-G solvation = -17528.018357 eV Core-core repulsion = 14792.118918 eV Total energy + Delta-G solvation = -2735.899439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.05749 -36.68653 -35.48023 -33.46210 -31.45404 -31.08111 -28.08374 -27.62852 -25.23011 -24.53926 -22.68445 -21.02374 -20.18548 -18.92869 -17.29490 -16.73725 -16.08096 -15.37640 -15.08806 -14.74204 -14.08367 -13.53123 -13.24019 -12.96740 -12.77226 -12.67381 -12.57943 -12.17795 -12.03879 -11.70649 -11.31837 -11.20225 -11.18562 -11.03655 -10.75632 -10.59818 -10.38570 -10.15945 -9.83245 -9.62904 -9.24066 -8.92755 -8.68706 -7.03521 -6.18939 -4.20500 2.76008 3.22895 3.33547 3.36023 3.64756 3.94331 4.31428 4.76127 4.83272 5.08818 5.15486 5.16070 5.28394 5.29080 5.42150 5.53020 5.65877 5.70093 5.77186 5.88789 5.92367 6.01113 6.07154 6.15828 6.23328 6.29835 6.33170 6.46167 6.62071 6.77898 7.06306 7.39004 7.40533 7.57169 8.06983 8.45768 8.82151 9.30060 9.42994 10.93731 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.006234 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.869971 B = 4490.580379 C = 5360.052611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.378 6.378 4 C 0.157 3.843 5 H 0.068 0.932 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.110 4.110 9 C -0.023 4.023 10 N -0.195 5.195 11 N -0.628 5.628 12 C 0.273 3.727 13 H 0.039 0.961 14 C -0.164 4.164 15 C -0.531 4.531 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.264 1.264 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.375 0.625 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.032 0.968 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 5.085 15.517 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.296 6.296 4 C 0.097 3.903 5 H 0.086 0.914 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.150 4.150 9 C -0.218 4.218 10 N -0.005 5.005 11 N -0.365 5.365 12 C 0.169 3.831 13 H 0.056 0.944 14 C -0.223 4.223 15 C -0.570 4.570 16 H 0.095 0.905 17 C -0.126 4.126 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.189 1.189 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.212 0.788 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.795 4.088 15.033 17.420 hybrid contribution 0.066 0.145 -0.560 0.582 sum -7.728 4.233 14.473 16.945 Atomic orbital electron populations 1.21720 0.94256 1.01933 1.02649 1.22526 0.95051 0.84048 1.00630 1.87909 1.20412 1.26554 1.94759 1.21264 0.80896 0.98232 0.89892 0.91436 1.22392 0.98267 0.96084 0.98437 1.22341 0.97535 1.00856 0.94540 1.21614 0.99907 0.95897 0.97615 1.24926 1.05435 0.94870 0.96596 1.73202 1.09980 1.24340 0.92985 1.48362 1.61379 1.22159 1.04594 1.18791 0.93052 0.87253 0.83986 0.94369 1.22585 0.99060 1.01062 0.99547 1.21081 1.05922 1.20153 1.09810 0.90458 1.24828 0.95800 0.96828 0.95187 1.69870 1.29884 1.37826 1.15585 0.86826 0.81690 0.80623 0.78937 1.20358 1.22203 1.18913 0.91971 0.91391 0.92333 0.92006 0.93899 0.90053 0.90720 0.91071 0.90947 0.91305 0.90632 0.78812 0.93007 0.93705 0.94863 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 37.16 0.38 -1.29 16 2 C 0.05 0.72 6.49 37.16 0.24 0.96 16 3 O -0.38 -5.64 9.99 -35.23 -0.35 -5.99 16 4 C 0.16 2.19 3.31 -26.84 -0.09 2.10 16 5 H 0.07 0.89 7.81 -51.93 -0.41 0.49 16 6 C -0.11 -1.23 6.60 -25.01 -0.17 -1.39 16 7 C -0.11 -1.24 6.95 -24.69 -0.17 -1.41 16 8 C -0.11 -1.56 5.93 -26.32 -0.16 -1.71 16 9 C -0.02 -0.39 7.11 -77.98 -0.55 -0.95 16 10 N -0.19 -3.94 11.11 36.06 0.40 -3.54 16 11 N -0.63 -13.85 6.06 -5.88 -0.04 -13.89 16 12 C 0.27 6.73 2.82 -69.08 -0.20 6.54 16 13 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 14 C -0.16 -3.75 9.00 37.16 0.33 -3.41 16 15 C -0.53 -14.85 9.32 -34.44 -0.32 -15.17 16 16 H 0.08 2.32 8.03 -52.49 -0.42 1.90 16 17 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 18 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 19 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 16 20 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 23 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.96 7.75 -51.93 -0.40 0.55 16 27 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.03 7.34 -51.93 -0.38 0.65 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.37 7.92 7.15 -182.60 -1.31 6.61 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.04 1.04 3.27 -51.93 -0.17 0.87 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -30.48 305.56 -6.83 -37.31 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.29 Total: 3.61 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.79 Total: -13.63 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 1.14 Total: -43.58 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.35 Total: -5.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.48 -6.83 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766453203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.668 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds