Wall clock time and date at job start Mon Mar 30 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.97232 * 330.18677 * 4 3 2 6 6 C 1.54283 * 109.98241 * 208.87147 * 4 3 2 7 7 C 1.54983 * 103.74816 * 217.53087 * 6 4 3 8 8 C 1.54887 * 102.33437 * 37.08602 * 7 6 4 9 9 C 1.51451 * 109.97938 * 91.45594 * 4 3 2 10 10 N 1.28006 * 126.34269 * 298.96179 * 9 4 3 11 11 N 1.40097 * 119.99749 * 180.02562 * 10 9 4 12 12 C 1.46499 * 119.99689 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47336 * 329.99767 * 12 11 10 14 14 C 1.53001 * 109.47545 * 90.00352 * 12 11 10 15 15 C 1.50707 * 109.46976 * 210.00086 * 12 11 10 16 16 H 1.08000 * 120.00007 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00057 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99941 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 119.99926 * 0.02562 * 17 15 12 20 20 H 1.48488 * 109.47444 * 89.99856 * 19 17 15 21 21 H 1.48503 * 109.47135 * 210.00030 * 19 17 15 22 22 H 1.48501 * 109.47166 * 329.99505 * 19 17 15 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.08995 * 110.56946 * 336.09356 * 6 4 3 29 29 H 1.08994 * 110.56583 * 98.96428 * 6 4 3 30 30 H 1.09003 * 110.83561 * 278.87334 * 7 6 4 31 31 H 1.09003 * 110.83450 * 155.29887 * 7 6 4 32 32 H 1.09002 * 110.44189 * 203.64037 * 8 7 6 33 33 H 1.09002 * 110.44382 * 81.11603 * 8 7 6 34 34 H 0.96999 * 120.00251 * 0.02562 * 11 10 9 35 35 H 1.08997 * 109.47281 * 59.99381 * 14 12 11 36 36 H 1.09001 * 109.47411 * 180.02562 * 14 12 11 37 37 H 1.09005 * 109.47002 * 299.99839 * 14 12 11 38 38 H 0.97001 * 119.99652 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8720 0.6035 0.5102 6 6 3.8559 2.7676 0.7007 7 6 5.0695 3.2535 -0.1318 8 6 4.6562 2.8695 -1.5743 9 6 3.9445 1.5368 -1.4221 10 7 3.8049 0.6435 -2.3282 11 7 4.3372 0.8537 -3.6070 12 6 4.1769 -0.1685 -4.6441 13 1 4.1315 -1.1535 -4.1796 14 6 2.8835 0.0898 -5.4195 15 6 5.3491 -0.1127 -5.5897 16 1 6.1346 0.6120 -5.4340 17 6 5.4187 -0.9868 -6.6537 18 7 6.4418 -0.9385 -7.4786 19 14 4.0598 -2.2399 -6.9236 20 1 3.0110 -1.6527 -7.7953 21 1 4.6241 -3.4497 -7.5742 22 1 3.4642 -2.6136 -5.6156 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0496 3.5003 0.6658 29 1 4.1522 2.5714 1.7311 30 1 5.9778 2.7284 0.1640 31 1 5.1964 4.3321 -0.0391 32 1 5.5375 2.7602 -2.2065 33 1 3.9799 3.6172 -1.9885 34 1 4.8117 1.6760 -3.8056 35 1 2.9289 1.0748 -5.8840 36 1 2.7641 -0.6710 -6.1908 37 1 2.0357 0.0495 -4.7355 38 1 6.4910 -1.5537 -8.2269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766453203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:06 Heat of formation + Delta-G solvation = -36.531019 kcal Electronic energy + Delta-G solvation = -17528.924280 eV Core-core repulsion = 14792.118918 eV Total energy + Delta-G solvation = -2736.805362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22165 -38.09870 -36.90029 -35.17424 -33.41246 -32.05436 -29.67211 -28.68146 -27.22494 -25.89411 -23.70491 -22.54535 -21.48924 -20.39802 -18.96527 -17.95083 -17.72914 -17.05917 -16.35624 -15.86553 -15.51112 -15.14087 -14.96701 -14.35789 -14.15197 -13.88339 -13.79590 -13.63196 -13.43405 -13.32178 -12.77274 -12.53316 -12.32058 -12.17767 -12.14697 -11.98697 -11.76764 -11.53571 -11.49840 -11.30615 -11.08432 -10.84029 -10.24168 -8.67637 -8.39087 -6.45915 1.27934 1.34052 1.38957 1.44761 2.10704 2.25613 2.89419 2.96540 3.70007 3.75152 4.04545 4.18844 4.22384 4.30044 4.38345 4.44693 4.49835 4.56636 4.62736 4.71374 4.73034 4.81650 4.93572 4.96343 4.97901 5.08432 5.15798 5.21185 5.26857 5.30495 5.40199 5.47857 5.75998 6.08990 6.31288 6.48860 6.62590 7.20981 7.76923 8.77023 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.006234 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.869971 B = 4490.580379 C = 5360.052611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.389 6.389 4 C 0.150 3.850 5 H 0.077 0.923 6 C -0.104 4.104 7 C -0.105 4.105 8 C -0.117 4.117 9 C -0.006 4.006 10 N -0.236 5.236 11 N -0.646 5.646 12 C 0.283 3.717 13 H 0.023 0.977 14 C -0.156 4.156 15 C -0.536 4.536 16 H 0.040 0.960 17 C 0.024 3.976 18 N -0.939 5.939 19 Si 0.950 3.050 20 H -0.261 1.261 21 H -0.291 1.291 22 H -0.253 1.253 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.372 0.628 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 5.405 17.753 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.307 6.307 4 C 0.089 3.911 5 H 0.095 0.905 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.157 4.157 9 C -0.202 4.202 10 N -0.044 5.044 11 N -0.383 5.383 12 C 0.177 3.823 13 H 0.041 0.959 14 C -0.214 4.214 15 C -0.575 4.575 16 H 0.058 0.942 17 C -0.175 4.175 18 N -0.578 5.578 19 Si 0.776 3.224 20 H -0.186 1.186 21 H -0.218 1.218 22 H -0.177 1.177 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.210 0.790 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.386 4.420 17.288 20.162 hybrid contribution 0.623 0.161 -1.088 1.264 sum -8.763 4.582 16.200 18.980 Atomic orbital electron populations 1.21721 0.92676 1.03127 1.02603 1.22660 0.96431 0.83416 1.00290 1.87907 1.20678 1.27459 1.94616 1.21634 0.80761 1.00637 0.88028 0.90477 1.22434 0.98084 0.94130 0.99521 1.22363 0.97781 1.02630 0.91520 1.21753 0.99237 0.94569 1.00183 1.25895 1.02358 0.94850 0.97100 1.73279 1.12352 1.26120 0.92649 1.48050 1.63146 1.21586 1.05518 1.18437 0.92372 0.87404 0.84082 0.95872 1.22456 0.98554 1.00947 0.99469 1.21299 1.06315 1.19185 1.10704 0.94166 1.25669 0.98169 0.98852 0.94806 1.70000 1.32063 1.39217 1.16511 0.85843 0.79005 0.78037 0.79523 1.18641 1.21781 1.17735 0.93344 0.89648 0.90971 0.94682 0.91877 0.89626 0.87718 0.90425 0.88377 0.92632 0.90171 0.79032 0.93007 0.93825 0.93322 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 10.28 71.98 0.74 -2.21 16 2 C 0.05 1.22 6.49 71.98 0.47 1.68 16 3 O -0.39 -10.78 9.99 -148.98 -1.49 -12.27 16 4 C 0.15 3.82 3.31 30.52 0.10 3.92 16 5 H 0.08 1.84 7.81 -2.39 -0.02 1.83 16 6 C -0.10 -1.85 6.60 31.71 0.21 -1.64 16 7 C -0.10 -1.92 6.95 31.92 0.22 -1.70 16 8 C -0.12 -3.17 5.93 30.86 0.18 -2.99 16 9 C -0.01 -0.20 7.11 47.14 0.34 0.14 16 10 N -0.24 -9.61 11.11 -39.75 -0.44 -10.05 16 11 N -0.65 -29.24 6.06 -172.51 -1.05 -30.29 16 12 C 0.28 14.14 2.82 44.25 0.12 14.26 16 13 H 0.02 1.23 7.20 -2.39 -0.02 1.21 16 14 C -0.16 -7.03 9.00 71.98 0.65 -6.38 16 15 C -0.54 -31.04 9.32 25.60 0.24 -30.81 16 16 H 0.04 2.55 8.03 -2.91 -0.02 2.53 16 17 C 0.02 1.41 5.45 84.66 0.46 1.87 16 18 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 19 Si 0.95 44.96 24.37 68.60 1.67 46.63 16 20 H -0.26 -11.63 6.87 99.48 0.68 -10.94 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.25 -11.46 6.53 99.48 0.65 -10.81 16 23 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.03 1.07 7.75 -2.39 -0.02 1.05 16 27 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.66 7.34 -2.39 -0.02 1.64 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.37 16.42 7.15 -213.32 -1.53 14.90 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.04 1.95 3.27 -2.39 -0.01 1.95 16 37 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -67.44 305.56 2.15 -65.29 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.57 Total: 22.27 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.73 Total: -23.85 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -1.19 Total: -98.07 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -1.49 Total: -12.27 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.67 Total: 46.63 kcal Total: -67.44 2.15 -65.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766453203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.756 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds