Wall clock time and date at job start Mon Mar 30 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47278 * 2 1 4 4 C 1.42897 * 114.00084 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.97226 * 29.81921 * 4 3 2 6 6 C 1.54284 * 109.98777 * 151.12936 * 4 3 2 7 7 C 1.54977 * 103.75346 * 142.47089 * 6 4 3 8 8 C 1.54892 * 102.33271 * 322.91904 * 7 6 4 9 9 C 1.51442 * 109.98854 * 268.54720 * 4 3 2 10 10 N 1.28014 * 126.34137 * 61.02120 * 9 4 3 11 11 N 1.40104 * 120.00083 * 180.02562 * 10 9 4 12 12 C 1.46496 * 119.99823 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47449 * 29.99949 * 12 11 10 14 14 C 1.53005 * 109.46826 * 269.99733 * 12 11 10 15 15 C 1.50700 * 109.46916 * 150.00010 * 12 11 10 16 16 H 1.08005 * 120.00068 * 35.00195 * 15 12 11 17 17 C 1.37877 * 119.99980 * 214.99540 * 15 12 11 18 18 N 1.31516 * 119.99998 * 184.91726 * 17 15 12 19 19 Si 1.86802 * 119.99767 * 4.91916 * 17 15 12 20 20 H 1.48499 * 109.46960 * 84.83239 * 19 17 15 21 21 H 1.48507 * 109.47066 * 204.83087 * 19 17 15 22 22 H 1.48494 * 109.47193 * 324.83247 * 19 17 15 23 23 H 1.09000 * 109.46901 * 300.00300 * 1 2 3 24 24 H 1.09003 * 109.47405 * 59.99726 * 1 2 3 25 25 H 1.09003 * 109.47168 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46901 * 239.99699 * 2 1 3 27 27 H 1.09003 * 109.47405 * 120.00274 * 2 1 3 28 28 H 1.09006 * 110.56909 * 261.04532 * 6 4 3 29 29 H 1.09003 * 110.56553 * 23.90002 * 6 4 3 30 30 H 1.08999 * 110.83381 * 204.70587 * 7 6 4 31 31 H 1.08999 * 110.83316 * 81.12691 * 7 6 4 32 32 H 1.09001 * 110.44055 * 278.88617 * 8 7 6 33 33 H 1.09000 * 110.54514 * 156.41933 * 8 7 6 34 34 H 0.96999 * 119.99726 * 0.02562 * 11 10 9 35 35 H 1.09000 * 109.46636 * 55.03143 * 14 12 11 36 36 H 1.09001 * 109.46943 * 175.02807 * 14 12 11 37 37 H 1.09002 * 109.47430 * 295.03082 * 14 12 11 38 38 H 0.97000 * 119.99469 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8720 0.6035 -0.5103 6 6 3.8560 2.7675 -0.7006 7 6 5.0696 3.2534 0.1318 8 6 4.6564 2.8692 1.5743 9 6 3.9447 1.5367 1.4219 10 7 3.8049 0.6434 2.3281 11 7 4.3365 0.8538 3.6072 12 6 4.1771 -0.1688 4.6440 13 1 4.1329 -1.1536 4.1793 14 6 2.8830 0.0881 5.4189 15 6 5.3488 -0.1118 5.5901 16 1 5.8031 0.8381 5.8305 17 6 5.8407 -1.2723 6.1488 18 7 6.7990 -1.2146 7.0476 19 14 5.1460 -2.9266 5.6291 20 1 5.8378 -3.3897 4.3994 21 1 5.3555 -3.9154 6.7171 22 1 3.6925 -2.7899 5.3576 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.1522 2.5714 -1.7312 29 1 3.0497 3.5002 -0.6658 30 1 5.1965 4.3320 0.0391 31 1 5.9778 2.7282 -0.1641 32 1 3.9801 3.6170 1.9884 33 1 5.5365 2.7606 2.2082 34 1 4.8101 1.6767 3.8062 35 1 2.0458 0.1346 4.7225 36 1 2.7190 -0.7210 6.1306 37 1 2.9623 1.0336 5.9555 38 1 7.1453 -2.0311 7.4404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766453207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:09 Heat of formation + Delta-G solvation = -24.196662 kcal Electronic energy + Delta-G solvation = -17535.196933 eV Core-core repulsion = 14798.926429 eV Total energy + Delta-G solvation = -2736.270504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.02089 -36.63221 -35.40058 -33.34501 -31.48911 -31.06404 -27.91719 -27.59364 -25.31909 -24.51514 -22.66236 -20.91953 -20.02006 -18.93549 -17.38653 -16.72680 -16.14964 -15.32703 -14.96480 -14.63561 -14.03999 -13.52843 -13.09887 -12.84901 -12.72709 -12.63837 -12.48862 -12.28875 -11.95110 -11.46604 -11.28061 -11.17016 -11.07941 -11.00084 -10.79736 -10.62155 -10.56999 -10.11189 -9.91425 -9.77886 -9.24725 -8.91137 -8.66756 -6.94869 -6.22537 -4.24873 2.81222 3.23350 3.31385 3.35046 3.70434 3.96942 4.31088 4.79187 4.85662 5.10859 5.16627 5.17732 5.30299 5.33631 5.44925 5.55112 5.68420 5.73584 5.79587 5.91864 5.94489 6.03668 6.08795 6.17421 6.28696 6.32572 6.34695 6.59734 6.73294 6.84860 7.17829 7.33227 7.41488 7.59354 8.16555 8.44303 8.80531 9.36266 9.40490 10.89754 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.006458 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.341217 B = 4334.409526 C = 5033.439335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.379 6.379 4 C 0.157 3.843 5 H 0.067 0.933 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.109 4.109 9 C -0.027 4.027 10 N -0.198 5.198 11 N -0.630 5.630 12 C 0.267 3.733 13 H 0.040 0.960 14 C -0.150 4.150 15 C -0.525 4.525 16 H 0.076 0.924 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.878 3.122 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.262 1.262 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.372 0.628 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 5.020 -14.882 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.097 3.903 5 H 0.085 0.915 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.222 4.222 10 N -0.008 5.008 11 N -0.368 5.368 12 C 0.164 3.836 13 H 0.058 0.942 14 C -0.210 4.210 15 C -0.564 4.564 16 H 0.094 0.906 17 C -0.125 4.125 18 N -0.527 5.527 19 Si 0.705 3.295 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.187 1.187 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.209 0.791 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.878 3.990 -14.431 16.919 hybrid contribution 0.505 -0.101 0.053 0.518 sum -7.373 3.889 -14.378 16.620 Atomic orbital electron populations 1.21718 0.94265 1.01909 1.02643 1.22521 0.95035 0.84092 1.00602 1.87903 1.20466 1.26506 1.94772 1.21258 0.80849 0.98157 0.90036 0.91539 1.22389 0.98257 0.96110 0.98405 1.22335 0.97525 1.00794 0.94610 1.21599 0.99894 0.95925 0.97525 1.24883 1.05756 0.94930 0.96592 1.73214 1.09893 1.24387 0.93292 1.48930 1.61132 1.22251 1.04466 1.18833 0.93629 0.87294 0.83829 0.94212 1.22343 0.98139 1.01002 0.99504 1.21052 1.14479 0.95687 1.25194 0.90601 1.24946 0.94180 0.99023 0.94310 1.69887 1.26949 1.28836 1.27040 0.86847 0.80460 0.83665 0.78540 1.19951 1.21208 1.18656 0.91957 0.92351 0.91413 0.93946 0.92029 0.90780 0.90085 0.90996 0.91102 0.90753 0.91321 0.79117 0.95472 0.93160 0.93593 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 37.16 0.38 -1.31 16 2 C 0.05 0.74 6.49 37.16 0.24 0.98 16 3 O -0.38 -5.74 9.99 -35.23 -0.35 -6.09 16 4 C 0.16 2.24 3.31 -26.85 -0.09 2.16 16 5 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 6 C -0.11 -1.26 6.60 -25.01 -0.17 -1.43 16 7 C -0.11 -1.27 6.95 -24.69 -0.17 -1.45 16 8 C -0.11 -1.58 5.93 -26.32 -0.16 -1.74 16 9 C -0.03 -0.46 7.11 -77.98 -0.55 -1.01 16 10 N -0.20 -4.07 11.11 36.06 0.40 -3.67 16 11 N -0.63 -14.04 6.06 -5.88 -0.04 -14.07 16 12 C 0.27 6.54 2.89 -69.08 -0.20 6.34 16 13 H 0.04 1.02 5.29 -51.93 -0.27 0.74 16 14 C -0.15 -3.37 9.50 37.16 0.35 -3.02 16 15 C -0.52 -14.55 9.08 -34.44 -0.31 -14.86 16 16 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 19 Si 0.88 21.44 26.99 -169.99 -4.59 16.86 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.17 6.82 56.52 0.39 -5.78 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.05 7.34 -51.93 -0.38 0.67 16 34 H 0.37 7.94 7.17 -182.60 -1.31 6.63 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -30.22 312.07 -7.28 -37.51 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.41 Total: 3.72 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.77 Total: -13.17 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.14 Total: -43.52 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.35 Total: -6.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.22 -7.28 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766453207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.310 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds