Wall clock time and date at job start Mon Mar 30 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47278 * 2 1 4 4 C 1.42897 * 114.00084 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.97226 * 29.81921 * 4 3 2 6 6 C 1.54284 * 109.98777 * 151.12936 * 4 3 2 7 7 C 1.54977 * 103.75346 * 142.47089 * 6 4 3 8 8 C 1.54892 * 102.33271 * 322.91904 * 7 6 4 9 9 C 1.51442 * 109.98854 * 268.54720 * 4 3 2 10 10 N 1.28014 * 126.34137 * 61.02120 * 9 4 3 11 11 N 1.40104 * 120.00083 * 180.02562 * 10 9 4 12 12 C 1.46496 * 119.99823 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47449 * 29.99949 * 12 11 10 14 14 C 1.53005 * 109.46826 * 269.99733 * 12 11 10 15 15 C 1.50700 * 109.46916 * 150.00010 * 12 11 10 16 16 H 1.08005 * 120.00068 * 35.00195 * 15 12 11 17 17 C 1.37877 * 119.99980 * 214.99540 * 15 12 11 18 18 N 1.31516 * 119.99998 * 184.91726 * 17 15 12 19 19 Si 1.86802 * 119.99767 * 4.91916 * 17 15 12 20 20 H 1.48499 * 109.46960 * 84.83239 * 19 17 15 21 21 H 1.48507 * 109.47066 * 204.83087 * 19 17 15 22 22 H 1.48494 * 109.47193 * 324.83247 * 19 17 15 23 23 H 1.09000 * 109.46901 * 300.00300 * 1 2 3 24 24 H 1.09003 * 109.47405 * 59.99726 * 1 2 3 25 25 H 1.09003 * 109.47168 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46901 * 239.99699 * 2 1 3 27 27 H 1.09003 * 109.47405 * 120.00274 * 2 1 3 28 28 H 1.09006 * 110.56909 * 261.04532 * 6 4 3 29 29 H 1.09003 * 110.56553 * 23.90002 * 6 4 3 30 30 H 1.08999 * 110.83381 * 204.70587 * 7 6 4 31 31 H 1.08999 * 110.83316 * 81.12691 * 7 6 4 32 32 H 1.09001 * 110.44055 * 278.88617 * 8 7 6 33 33 H 1.09000 * 110.54514 * 156.41933 * 8 7 6 34 34 H 0.96999 * 119.99726 * 0.02562 * 11 10 9 35 35 H 1.09000 * 109.46636 * 55.03143 * 14 12 11 36 36 H 1.09001 * 109.46943 * 175.02807 * 14 12 11 37 37 H 1.09002 * 109.47430 * 295.03082 * 14 12 11 38 38 H 0.97000 * 119.99469 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8720 0.6035 -0.5103 6 6 3.8560 2.7675 -0.7006 7 6 5.0696 3.2534 0.1318 8 6 4.6564 2.8692 1.5743 9 6 3.9447 1.5367 1.4219 10 7 3.8049 0.6434 2.3281 11 7 4.3365 0.8538 3.6072 12 6 4.1771 -0.1688 4.6440 13 1 4.1329 -1.1536 4.1793 14 6 2.8830 0.0881 5.4189 15 6 5.3488 -0.1118 5.5901 16 1 5.8031 0.8381 5.8305 17 6 5.8407 -1.2723 6.1488 18 7 6.7990 -1.2146 7.0476 19 14 5.1460 -2.9266 5.6291 20 1 5.8378 -3.3897 4.3994 21 1 5.3555 -3.9154 6.7171 22 1 3.6925 -2.7899 5.3576 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.1522 2.5714 -1.7312 29 1 3.0497 3.5002 -0.6658 30 1 5.1965 4.3320 0.0391 31 1 5.9778 2.7282 -0.1641 32 1 3.9801 3.6170 1.9884 33 1 5.5365 2.7606 2.2082 34 1 4.8101 1.6767 3.8062 35 1 2.0458 0.1346 4.7225 36 1 2.7190 -0.7210 6.1306 37 1 2.9623 1.0336 5.9555 38 1 7.1453 -2.0311 7.4404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766453207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:09 Heat of formation + Delta-G solvation = -44.103119 kcal Electronic energy + Delta-G solvation = -17536.060142 eV Core-core repulsion = 14798.926429 eV Total energy + Delta-G solvation = -2737.133713 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20569 -38.04257 -36.83040 -35.09155 -33.41344 -32.05321 -29.50128 -28.67184 -27.33438 -25.84761 -23.69515 -22.34251 -21.44425 -20.46020 -19.10865 -17.95371 -17.70253 -16.87570 -16.31861 -15.84438 -15.52013 -15.02419 -14.62878 -14.57231 -14.15497 -13.78110 -13.71818 -13.62544 -13.36332 -13.02278 -12.81865 -12.61824 -12.36592 -12.24095 -12.15879 -11.97316 -11.89358 -11.65635 -11.49338 -11.28906 -11.06593 -10.83644 -10.22703 -8.60445 -8.40037 -6.47138 1.30046 1.32195 1.41648 1.43662 2.13624 2.26811 2.89955 3.01192 3.71367 3.77543 4.06415 4.18997 4.22733 4.30424 4.38539 4.44778 4.53798 4.58783 4.71493 4.75022 4.82172 4.86550 4.96918 4.97577 5.02339 5.08512 5.17279 5.22502 5.26862 5.38140 5.40238 5.47580 5.76417 6.15491 6.31675 6.52992 6.64106 7.21328 7.80499 8.75884 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.006458 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.341217 B = 4334.409526 C = 5033.439335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.389 6.389 4 C 0.149 3.851 5 H 0.076 0.924 6 C -0.104 4.104 7 C -0.105 4.105 8 C -0.116 4.116 9 C -0.010 4.010 10 N -0.238 5.238 11 N -0.649 5.649 12 C 0.275 3.725 13 H 0.031 0.969 14 C -0.142 4.142 15 C -0.529 4.529 16 H 0.040 0.960 17 C 0.027 3.973 18 N -0.935 5.935 19 Si 0.939 3.061 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.247 1.247 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.370 0.630 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 5.123 -17.582 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.307 6.307 4 C 0.089 3.911 5 H 0.094 0.906 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.156 4.156 9 C -0.206 4.206 10 N -0.046 5.046 11 N -0.386 5.386 12 C 0.171 3.829 13 H 0.049 0.951 14 C -0.202 4.202 15 C -0.568 4.568 16 H 0.058 0.942 17 C -0.173 4.173 18 N -0.574 5.574 19 Si 0.763 3.237 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.171 1.171 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.104 4.103 -17.140 19.837 hybrid contribution 0.888 0.023 0.752 1.164 sum -8.217 4.126 -16.388 18.791 Atomic orbital electron populations 1.21718 0.92638 1.03128 1.02610 1.22659 0.96455 0.83441 1.00251 1.87902 1.20697 1.27432 1.94627 1.21622 0.80740 1.00555 0.88161 0.90619 1.22431 0.98080 0.94155 0.99487 1.22357 0.97758 1.02589 0.91588 1.21735 0.99218 0.94601 1.00088 1.25852 1.02681 0.94926 0.97115 1.73277 1.12245 1.26146 0.92933 1.48508 1.62927 1.21746 1.05429 1.18555 0.92917 0.87581 0.83881 0.95138 1.22221 0.97580 1.00929 0.99445 1.21233 1.15343 0.94339 1.25896 0.94185 1.25748 0.94563 1.02796 0.94195 1.70009 1.28779 1.30023 1.28589 0.85870 0.80513 0.79090 0.78241 1.19769 1.20230 1.17088 0.93315 0.90982 0.89641 0.91943 0.94701 0.87780 0.89631 0.88394 0.90490 0.90274 0.92671 0.79317 0.94217 0.93029 0.93758 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 10.28 71.98 0.74 -2.24 16 2 C 0.05 1.23 6.49 71.98 0.47 1.70 16 3 O -0.39 -10.94 9.99 -148.98 -1.49 -12.43 16 4 C 0.15 3.90 3.31 30.52 0.10 4.00 16 5 H 0.08 1.86 7.81 -2.38 -0.02 1.84 16 6 C -0.10 -1.90 6.60 31.71 0.21 -1.69 16 7 C -0.10 -1.98 6.95 31.92 0.22 -1.76 16 8 C -0.12 -3.20 5.93 30.86 0.18 -3.02 16 9 C -0.01 -0.33 7.11 47.13 0.34 0.01 16 10 N -0.24 -9.78 11.11 -39.76 -0.44 -10.22 16 11 N -0.65 -29.47 6.06 -172.53 -1.05 -30.52 16 12 C 0.27 13.64 2.89 44.25 0.13 13.77 16 13 H 0.03 1.56 5.29 -2.39 -0.01 1.55 16 14 C -0.14 -6.37 9.50 71.98 0.68 -5.68 16 15 C -0.53 -30.28 9.08 25.60 0.23 -30.04 16 16 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 17 C 0.03 1.55 5.47 84.65 0.46 2.01 16 18 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 19 Si 0.94 44.45 26.99 68.60 1.85 46.30 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.25 -11.02 6.82 99.48 0.68 -10.34 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 27 H 0.03 1.07 7.75 -2.39 -0.02 1.06 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.68 7.34 -2.39 -0.02 1.66 16 34 H 0.37 16.40 7.17 -213.32 -1.53 14.87 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -66.70 312.07 2.41 -64.29 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.53 Total: 22.53 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 3.76 Total: -22.94 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -1.19 Total: -97.75 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.49 Total: -12.43 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.85 Total: 46.30 kcal Total: -66.70 2.41 -64.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766453207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.186 kcal (2) G-P(sol) polarization free energy of solvation -66.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds