Wall clock time and date at job start Mon Mar 30 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.46997 * 2 1 4 4 C 1.42903 * 114.00007 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.96964 * 29.30211 * 4 3 2 6 6 C 1.54276 * 109.98271 * 150.57163 * 4 3 2 7 7 C 1.54992 * 103.75077 * 142.51271 * 6 4 3 8 8 C 1.54885 * 102.33184 * 322.91477 * 7 6 4 9 9 C 1.51446 * 109.98512 * 268.03184 * 4 3 2 10 10 N 1.28005 * 126.34614 * 60.95879 * 9 4 3 11 11 N 1.40095 * 120.00355 * 180.02562 * 10 9 4 12 12 C 1.46506 * 120.00226 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46593 * 329.99666 * 12 11 10 14 14 C 1.52994 * 109.47251 * 89.99287 * 12 11 10 15 15 C 1.50696 * 109.46974 * 209.99965 * 12 11 10 16 16 H 1.07991 * 120.00390 * 359.97438 * 15 12 11 17 17 C 1.37884 * 119.99679 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00045 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99812 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47174 * 89.99249 * 19 17 15 21 21 H 1.48497 * 109.46648 * 209.99169 * 19 17 15 22 22 H 1.48498 * 109.46871 * 329.99261 * 19 17 15 23 23 H 1.08999 * 109.47333 * 59.99970 * 1 2 3 24 24 H 1.09002 * 109.47316 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47353 * 299.99932 * 1 2 3 26 26 H 1.09000 * 109.47353 * 240.00067 * 2 1 3 27 27 H 1.08999 * 109.47333 * 120.00030 * 2 1 3 28 28 H 1.08997 * 110.57134 * 261.07801 * 6 4 3 29 29 H 1.09002 * 110.57300 * 23.94652 * 6 4 3 30 30 H 1.08997 * 110.82939 * 81.12873 * 7 6 4 31 31 H 1.08999 * 110.82851 * 204.50367 * 7 6 4 32 32 H 1.09003 * 110.43973 * 156.35933 * 8 7 6 33 33 H 1.08999 * 110.44699 * 278.76196 * 8 7 6 34 34 H 0.97004 * 120.00247 * 359.97438 * 11 10 9 35 35 H 1.08999 * 109.47262 * 299.99737 * 14 12 11 36 36 H 1.08992 * 109.47425 * 60.00403 * 14 12 11 37 37 H 1.09007 * 109.47260 * 180.02562 * 14 12 11 38 38 H 0.96999 * 120.00013 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8727 0.5989 -0.5005 6 6 3.8569 2.7605 -0.7118 7 6 5.0700 3.2542 0.1171 8 6 4.6552 2.8844 1.5628 9 6 3.9423 1.5500 1.4232 10 7 3.8003 0.6657 2.3377 11 7 4.3299 0.8880 3.6155 12 6 4.1678 -0.1244 4.6620 13 1 3.2409 -0.6735 4.4958 14 6 5.3499 -1.0948 4.6204 15 6 4.1180 0.5492 6.0091 16 1 4.1993 1.6238 6.0789 17 6 3.9695 -0.2066 7.1528 18 7 3.8709 -1.5153 7.0679 19 14 3.9084 0.6283 8.8227 20 1 2.5007 0.9615 9.1584 21 1 4.4600 -0.2868 9.8540 22 1 4.7160 1.8739 8.7831 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1542 2.5543 -1.7400 29 1 3.0509 3.4938 -0.6850 30 1 5.9783 2.7260 -0.1728 31 1 5.1993 4.3313 0.0111 32 1 5.5358 2.7811 2.1969 33 1 3.9804 3.6375 1.9698 34 1 4.8046 1.7119 3.8072 35 1 5.3858 -1.5821 3.6460 36 1 6.2767 -0.5459 4.7865 37 1 5.2290 -1.8483 5.3987 38 1 3.7661 -2.0470 7.8723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766453210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:14 Heat of formation + Delta-G solvation = -42.657987 kcal Electronic energy + Delta-G solvation = -17452.279891 eV Core-core repulsion = 14715.208844 eV Total energy + Delta-G solvation = -2737.071047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18996 -38.01139 -36.82075 -35.18747 -32.86016 -32.06024 -29.21230 -28.66222 -27.34227 -25.82757 -23.71215 -22.53231 -21.49612 -20.28390 -18.80669 -17.88310 -17.51996 -16.92743 -16.34914 -15.83039 -15.48684 -15.08315 -14.52153 -14.30687 -13.94537 -13.74745 -13.61191 -13.53345 -13.11609 -12.95790 -12.78517 -12.49325 -12.34056 -12.26655 -12.17179 -12.10760 -11.94336 -11.68146 -11.48613 -11.15587 -11.02367 -10.59440 -10.21286 -8.59033 -8.19438 -6.36678 1.40361 1.41339 1.44956 1.52350 2.17208 2.45474 2.90824 3.09001 3.72672 3.79137 4.07381 4.18326 4.23013 4.30451 4.40638 4.53348 4.58737 4.71422 4.73288 4.81386 4.95279 4.96878 4.98851 5.07631 5.10283 5.16169 5.20678 5.25673 5.37784 5.41917 5.55749 5.79825 5.88689 6.21467 6.32049 6.43288 6.84986 7.35214 7.86986 8.85692 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025186 B = 0.005671 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.476484 B = 4936.539782 C = 5482.637582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.391 6.391 4 C 0.148 3.852 5 H 0.077 0.923 6 C -0.104 4.104 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.014 4.014 10 N -0.239 5.239 11 N -0.649 5.649 12 C 0.309 3.691 13 H -0.005 1.005 14 C -0.134 4.134 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.019 3.981 18 N -0.915 5.915 19 Si 0.971 3.029 20 H -0.277 1.277 21 H -0.277 1.277 22 H -0.266 1.266 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.370 0.630 35 H 0.016 0.984 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 7.237 -15.580 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 O -0.309 6.309 4 C 0.088 3.912 5 H 0.094 0.906 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.155 4.155 9 C -0.210 4.210 10 N -0.047 5.047 11 N -0.386 5.386 12 C 0.205 3.795 13 H 0.013 0.987 14 C -0.193 4.193 15 C -0.587 4.587 16 H 0.076 0.924 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.795 3.205 20 H -0.202 1.202 21 H -0.202 1.202 22 H -0.191 1.191 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.207 0.793 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.601 6.152 -15.145 16.358 hybrid contribution 0.558 0.701 1.417 1.677 sum -0.043 6.853 -13.728 15.344 Atomic orbital electron populations 1.21720 0.92768 1.03125 1.02533 1.22633 0.96410 0.83458 1.00135 1.87899 1.20959 1.27390 1.94630 1.21650 0.80625 1.00652 0.88247 0.90559 1.22441 0.98172 0.94117 0.99481 1.22350 0.97706 1.02643 0.91369 1.21740 0.99199 0.94381 1.00197 1.25891 1.02977 0.95103 0.97051 1.73304 1.12021 1.26502 0.92903 1.48381 1.63079 1.21922 1.05246 1.18056 0.92718 0.85570 0.83135 0.98671 1.22000 0.98433 1.00291 0.98576 1.21512 1.51935 0.93701 0.91544 0.92425 1.25725 0.94084 0.95449 1.02897 1.70017 1.49415 1.05694 1.30159 0.85369 0.78369 0.78409 0.78323 1.20237 1.20245 1.19076 0.90698 0.89650 0.93691 0.91598 0.95171 0.87629 0.89867 0.90147 0.88350 0.92254 0.90713 0.79294 0.96504 0.95176 0.91294 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 10.28 71.98 0.74 -2.70 16 2 C 0.05 1.42 6.49 71.98 0.47 1.89 16 3 O -0.39 -11.99 9.99 -148.98 -1.49 -13.48 16 4 C 0.15 4.10 3.31 30.52 0.10 4.20 16 5 H 0.08 1.96 7.81 -2.39 -0.02 1.94 16 6 C -0.10 -1.98 6.60 31.71 0.21 -1.77 16 7 C -0.10 -1.92 6.95 31.92 0.22 -1.70 16 8 C -0.11 -3.22 5.93 30.89 0.18 -3.04 16 9 C -0.01 -0.50 7.12 47.17 0.34 -0.16 16 10 N -0.24 -10.53 11.15 -39.68 -0.44 -10.97 16 11 N -0.65 -31.11 6.06 -172.52 -1.05 -32.16 16 12 C 0.31 16.98 3.23 44.24 0.14 17.12 16 13 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 14 C -0.13 -6.98 9.29 71.98 0.67 -6.31 16 15 C -0.55 -31.00 8.74 25.60 0.22 -30.77 16 16 H 0.06 3.19 7.79 -2.92 -0.02 3.16 16 17 C 0.02 1.04 5.30 84.66 0.45 1.49 16 18 N -0.91 -52.97 11.32 21.45 0.24 -52.73 16 19 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 27 H 0.03 1.05 7.80 -2.39 -0.02 1.03 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.74 7.35 -2.39 -0.02 1.73 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.37 16.64 7.16 -213.32 -1.53 15.11 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 3.86 6.07 -2.38 -0.01 3.84 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -65.52 312.50 2.53 -62.98 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.50 Total: 22.54 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.74 Total: -21.76 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -1.25 Total: -95.86 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.49 Total: -13.48 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.52 2.53 -62.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766453210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.327 kcal (2) G-P(sol) polarization free energy of solvation -65.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds