Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99939 * 2 1 4 4 H 1.08998 * 109.62475 * 329.99011 * 3 2 1 5 5 C 1.53232 * 109.62404 * 209.61572 * 3 2 1 6 6 C 1.52954 * 109.40363 * 185.65378 * 5 3 2 7 7 C 1.52958 * 109.81714 * 63.59981 * 6 5 3 8 8 C 1.53226 * 109.40228 * 296.39739 * 7 6 5 9 9 C 1.51262 * 109.63078 * 90.37429 * 3 2 1 10 10 N 1.28011 * 120.84974 * 351.03823 * 9 3 2 11 11 N 1.40107 * 119.99784 * 175.14649 * 10 9 3 12 12 C 1.46504 * 119.99473 * 185.28685 * 11 10 9 13 13 H 1.08998 * 109.47104 * 329.99981 * 12 11 10 14 14 C 1.53005 * 109.46906 * 90.00305 * 12 11 10 15 15 C 1.50699 * 109.46643 * 209.99718 * 12 11 10 16 16 H 1.07997 * 120.00422 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99643 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00153 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99962 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.46880 * 90.00265 * 19 17 15 21 21 H 1.48498 * 109.47190 * 210.00658 * 19 17 15 22 22 H 1.48498 * 109.47181 * 330.00561 * 19 17 15 23 23 H 1.09000 * 109.46997 * 60.00857 * 1 2 3 24 24 H 1.09001 * 109.47921 * 300.00935 * 1 2 3 25 25 H 1.09001 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.48114 * 305.63727 * 5 3 2 27 27 H 1.09002 * 109.48204 * 65.67295 * 5 3 2 28 28 H 1.09000 * 109.41277 * 183.70420 * 6 5 3 29 29 H 1.08997 * 109.41819 * 303.48913 * 6 5 3 30 30 H 1.09000 * 109.48441 * 56.37968 * 7 6 5 31 31 H 1.09004 * 109.48018 * 176.42145 * 7 6 5 32 32 H 1.09000 * 109.62794 * 174.34532 * 8 7 6 33 33 H 1.08997 * 109.63083 * 294.72243 * 8 7 6 34 34 H 0.96998 * 119.99974 * 5.28794 * 11 10 9 35 35 H 1.08997 * 109.46968 * 299.99342 * 14 12 11 36 36 H 1.08995 * 109.47150 * 59.99536 * 14 12 11 37 37 H 1.09004 * 109.46508 * 179.97438 * 14 12 11 38 38 H 0.97005 * 120.00027 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3469 2.0015 -0.5135 5 6 3.3658 1.2652 -0.7133 6 6 4.0466 2.6292 -0.5880 7 6 4.3418 2.9282 0.8828 8 6 3.0230 3.0311 1.6560 9 6 2.2254 1.7659 1.4247 10 7 1.7487 1.1003 2.4088 11 7 2.0437 1.4852 3.7232 12 6 1.5954 0.6585 4.8466 13 1 0.6716 0.1473 4.5756 14 6 2.6721 -0.3762 5.1798 15 6 1.3511 1.5341 6.0485 16 1 1.5131 2.5998 5.9822 17 6 0.9198 0.9748 7.2326 18 7 0.7220 -0.3228 7.3133 19 14 0.6163 2.0603 8.7223 20 1 -0.7938 2.5256 8.7167 21 1 0.8767 1.2844 9.9614 22 1 1.5250 3.2338 8.6731 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3635 0.5140 0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.9948 0.5015 -0.2558 27 1 3.2154 1.0294 -1.7668 28 1 4.9801 2.6212 -1.1505 29 1 3.3894 3.4004 -0.9897 30 1 4.9477 2.1252 1.3025 31 1 4.8833 3.8711 0.9604 32 1 3.2303 3.1440 2.7201 33 1 2.4561 3.8913 1.3003 34 1 2.5446 2.2991 3.8894 35 1 2.8488 -1.0095 4.3105 36 1 3.5958 0.1350 5.4507 37 1 2.3387 -0.9910 6.0159 38 1 0.4182 -0.7163 8.1463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = -16.505901 kcal Electronic energy + Delta-G solvation = -17754.808237 eV Core-core repulsion = 15018.871229 eV Total energy + Delta-G solvation = -2735.937008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.04659 -36.53370 -35.52592 -33.66687 -31.14976 -30.25266 -28.17166 -26.43791 -25.51894 -25.05631 -22.52724 -21.08878 -20.19549 -18.63305 -17.19891 -16.18374 -15.60650 -15.22328 -14.88446 -14.72140 -13.82644 -13.77294 -13.42956 -13.22661 -12.68074 -12.45365 -12.34593 -11.82659 -11.63041 -11.28548 -11.01741 -10.97921 -10.87778 -10.81666 -10.66280 -10.48211 -10.23676 -10.19036 -9.95929 -9.53750 -9.05797 -8.77065 -8.46400 -6.78367 -6.09102 -4.17057 3.00013 3.25907 3.32132 3.34639 3.87719 4.12276 4.41478 4.85104 4.97757 5.12901 5.17562 5.22830 5.30948 5.45023 5.56025 5.66898 5.70500 5.76475 5.88836 5.98496 6.04798 6.07191 6.12785 6.19255 6.42026 6.52614 6.84057 7.09103 7.11497 7.25151 7.51175 7.64919 7.87509 7.95236 8.25571 8.41855 8.92779 9.49292 9.54869 10.96691 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031133 B = 0.005792 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.145981 B = 4832.770556 C = 5292.242903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.371 6.371 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.101 4.101 9 C -0.041 4.041 10 N -0.185 5.185 11 N -0.639 5.639 12 C 0.300 3.700 13 H 0.038 0.962 14 C -0.149 4.149 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.031 0.969 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.366 0.634 35 H 0.012 0.988 36 H 0.023 0.977 37 H 0.088 0.912 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 5.020 -14.498 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.289 6.289 3 C 0.107 3.893 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.141 4.141 9 C -0.235 4.235 10 N 0.005 4.995 11 N -0.378 5.378 12 C 0.197 3.803 13 H 0.056 0.944 14 C -0.208 4.208 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.204 0.796 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.106 0.894 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.325 3.773 -13.944 14.823 hybrid contribution 0.262 1.807 1.021 2.092 sum 3.587 5.581 -12.923 14.527 Atomic orbital electron populations 1.22709 0.81176 1.02397 0.99672 1.87891 1.19625 1.26717 1.94700 1.20672 0.94363 0.84451 0.89773 0.91868 1.21588 0.95231 0.98097 0.99938 1.21441 1.00262 0.96665 0.96712 1.21499 0.96961 1.01451 0.95129 1.20945 0.96031 0.96504 1.00642 1.24760 1.05504 0.98157 0.95123 1.73486 1.12365 1.21919 0.91746 1.49047 1.62036 1.27879 0.98810 1.18425 0.92915 0.88449 0.80466 0.94384 1.22186 0.98649 0.99672 1.00291 1.21261 1.46104 0.93931 0.95475 0.92425 1.24860 0.95080 0.95129 0.98605 1.69899 1.45640 1.09964 1.26905 0.86454 0.78567 0.80256 0.81851 1.20596 1.21042 1.19944 0.95009 0.93259 0.90075 0.90849 0.91264 0.91619 0.91885 0.91789 0.92024 0.91380 0.91231 0.79592 0.96883 0.95758 0.89366 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.69 101.05 1.08 1.61 16 2 O -0.37 -6.19 9.94 -35.23 -0.35 -6.54 16 3 C 0.17 2.46 2.88 -27.49 -0.08 2.39 16 4 H 0.06 0.81 7.80 -51.93 -0.40 0.41 16 5 C -0.11 -1.32 5.60 -26.63 -0.15 -1.47 16 6 C -0.11 -1.15 5.81 -26.78 -0.16 -1.31 16 7 C -0.11 -1.34 5.94 -26.64 -0.16 -1.49 16 8 C -0.10 -1.48 5.91 -27.45 -0.16 -1.64 16 9 C -0.04 -0.72 6.46 -78.32 -0.51 -1.22 16 10 N -0.19 -3.99 10.41 35.89 0.37 -3.62 16 11 N -0.64 -14.82 5.99 -5.88 -0.04 -14.86 16 12 C 0.30 7.96 3.23 -69.08 -0.22 7.74 16 13 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 14 C -0.15 -3.84 9.29 37.16 0.35 -3.49 16 15 C -0.53 -14.60 8.74 -34.44 -0.30 -14.90 16 16 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 18 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 24 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.09 5.58 -51.93 -0.29 0.80 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.37 7.95 6.08 -182.59 -1.11 6.84 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -29.85 305.48 -7.35 -37.20 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.14 Total: 3.79 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.40 Total: -12.07 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.97 Total: -43.10 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.35 Total: -6.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.85 -7.35 -37.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.694 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds