Wall clock time and date at job start Mon Mar 30 2020 03:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99939 * 2 1 4 4 H 1.08998 * 109.62475 * 329.99011 * 3 2 1 5 5 C 1.53232 * 109.62404 * 209.61572 * 3 2 1 6 6 C 1.52954 * 109.40363 * 185.65378 * 5 3 2 7 7 C 1.52958 * 109.81714 * 63.59981 * 6 5 3 8 8 C 1.53226 * 109.40228 * 296.39739 * 7 6 5 9 9 C 1.51262 * 109.63078 * 90.37429 * 3 2 1 10 10 N 1.28011 * 120.84974 * 351.03823 * 9 3 2 11 11 N 1.40107 * 119.99784 * 175.14649 * 10 9 3 12 12 C 1.46504 * 119.99473 * 185.28685 * 11 10 9 13 13 H 1.08998 * 109.47104 * 329.99981 * 12 11 10 14 14 C 1.53005 * 109.46906 * 90.00305 * 12 11 10 15 15 C 1.50699 * 109.46643 * 209.99718 * 12 11 10 16 16 H 1.07997 * 120.00422 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99643 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00153 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99962 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.46880 * 90.00265 * 19 17 15 21 21 H 1.48498 * 109.47190 * 210.00658 * 19 17 15 22 22 H 1.48498 * 109.47181 * 330.00561 * 19 17 15 23 23 H 1.09000 * 109.46997 * 60.00857 * 1 2 3 24 24 H 1.09001 * 109.47921 * 300.00935 * 1 2 3 25 25 H 1.09001 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.48114 * 305.63727 * 5 3 2 27 27 H 1.09002 * 109.48204 * 65.67295 * 5 3 2 28 28 H 1.09000 * 109.41277 * 183.70420 * 6 5 3 29 29 H 1.08997 * 109.41819 * 303.48913 * 6 5 3 30 30 H 1.09000 * 109.48441 * 56.37968 * 7 6 5 31 31 H 1.09004 * 109.48018 * 176.42145 * 7 6 5 32 32 H 1.09000 * 109.62794 * 174.34532 * 8 7 6 33 33 H 1.08997 * 109.63083 * 294.72243 * 8 7 6 34 34 H 0.96998 * 119.99974 * 5.28794 * 11 10 9 35 35 H 1.08997 * 109.46968 * 299.99342 * 14 12 11 36 36 H 1.08995 * 109.47150 * 59.99536 * 14 12 11 37 37 H 1.09004 * 109.46508 * 179.97438 * 14 12 11 38 38 H 0.97005 * 120.00027 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3469 2.0015 -0.5135 5 6 3.3658 1.2652 -0.7133 6 6 4.0466 2.6292 -0.5880 7 6 4.3418 2.9282 0.8828 8 6 3.0230 3.0311 1.6560 9 6 2.2254 1.7659 1.4247 10 7 1.7487 1.1003 2.4088 11 7 2.0437 1.4852 3.7232 12 6 1.5954 0.6585 4.8466 13 1 0.6716 0.1473 4.5756 14 6 2.6721 -0.3762 5.1798 15 6 1.3511 1.5341 6.0485 16 1 1.5131 2.5998 5.9822 17 6 0.9198 0.9748 7.2326 18 7 0.7220 -0.3228 7.3133 19 14 0.6163 2.0603 8.7223 20 1 -0.7938 2.5256 8.7167 21 1 0.8767 1.2844 9.9614 22 1 1.5250 3.2338 8.6731 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3635 0.5140 0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.9948 0.5015 -0.2558 27 1 3.2154 1.0294 -1.7668 28 1 4.9801 2.6212 -1.1505 29 1 3.3894 3.4004 -0.9897 30 1 4.9477 2.1252 1.3025 31 1 4.8833 3.8711 0.9604 32 1 3.2303 3.1440 2.7201 33 1 2.4561 3.8913 1.3003 34 1 2.5446 2.2991 3.8894 35 1 2.8488 -1.0095 4.3105 36 1 3.5958 0.1350 5.4507 37 1 2.3387 -0.9910 6.0159 38 1 0.4182 -0.7163 8.1463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771880198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:21 Heat of formation + Delta-G solvation = -35.798936 kcal Electronic energy + Delta-G solvation = -17755.644846 eV Core-core repulsion = 15018.871229 eV Total energy + Delta-G solvation = -2736.773616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28057 -37.97150 -36.95675 -35.43479 -33.04591 -31.34040 -29.73836 -27.84219 -27.29730 -26.66603 -23.73567 -22.42373 -21.81014 -20.06146 -18.80928 -17.77520 -17.07106 -16.85763 -16.24063 -16.03387 -15.38029 -14.95952 -14.78774 -14.41397 -14.29826 -14.07477 -13.76556 -13.32691 -13.11893 -12.88891 -12.72190 -12.62935 -12.36635 -12.16681 -12.02997 -11.97113 -11.86765 -11.49759 -11.41144 -11.07689 -10.83476 -10.58477 -10.18175 -8.51661 -8.18119 -6.36031 1.40611 1.41560 1.52385 1.57408 2.24743 2.49749 2.94633 3.09742 3.75072 3.94914 4.06240 4.16873 4.20926 4.36342 4.50790 4.55392 4.63846 4.66311 4.73693 4.89703 4.92517 4.96752 5.00100 5.10896 5.12724 5.18874 5.24659 5.33369 5.43715 5.50016 5.57001 5.79969 5.88563 6.19947 6.39785 6.45890 6.87328 7.36223 7.94916 8.86804 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031133 B = 0.005792 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.145981 B = 4832.770556 C = 5292.242903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.395 6.395 3 C 0.157 3.843 4 H 0.092 0.908 5 C -0.106 4.106 6 C -0.107 4.107 7 C -0.108 4.108 8 C -0.106 4.106 9 C -0.011 4.011 10 N -0.243 5.243 11 N -0.655 5.655 12 C 0.311 3.689 13 H -0.006 1.006 14 C -0.133 4.133 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.065 0.935 24 H 0.021 0.979 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.369 0.631 35 H 0.011 0.989 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 7.003 -16.250 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.314 6.314 3 C 0.097 3.903 4 H 0.110 0.890 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.206 4.206 10 N -0.051 5.051 11 N -0.395 5.395 12 C 0.207 3.793 13 H 0.012 0.988 14 C -0.192 4.192 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.796 3.204 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.191 1.191 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.208 0.792 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.057 5.761 -15.715 17.222 hybrid contribution 0.042 1.214 1.352 1.817 sum 4.099 6.974 -14.363 16.485 Atomic orbital electron populations 1.22792 0.80317 1.03087 0.99876 1.87873 1.20785 1.28070 1.94655 1.21147 0.96595 0.84407 0.88169 0.89002 1.21633 0.93080 0.98914 1.00789 1.21465 1.01756 0.95808 0.95432 1.21506 0.95013 1.02191 0.95970 1.21097 0.97638 0.95685 1.00240 1.25795 1.01513 0.97556 0.95754 1.73561 1.15677 1.24332 0.91487 1.48557 1.63740 1.27978 0.99177 1.17996 0.91118 0.88626 0.81604 0.98817 1.21995 0.98575 0.99312 0.99325 1.21520 1.46711 0.94088 0.96300 0.92367 1.25748 0.94501 0.96485 1.01525 1.70030 1.45943 1.11626 1.27778 0.85353 0.78536 0.78522 0.77951 1.20116 1.20359 1.19065 0.91634 0.95999 0.89401 0.92907 0.88628 0.89088 0.89790 0.93626 0.89526 0.93322 0.88854 0.79181 0.96949 0.95348 0.91330 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.69 113.37 1.21 2.20 16 2 O -0.40 -12.84 9.94 -148.98 -1.48 -14.32 16 3 C 0.16 4.28 2.88 30.10 0.09 4.36 16 4 H 0.09 2.03 7.80 -2.39 -0.02 2.01 16 5 C -0.11 -2.21 5.60 30.66 0.17 -2.04 16 6 C -0.11 -1.72 5.81 30.56 0.18 -1.54 16 7 C -0.11 -2.28 5.94 30.66 0.18 -2.09 16 8 C -0.11 -2.93 5.91 30.13 0.18 -2.76 16 9 C -0.01 -0.36 6.46 46.91 0.30 -0.06 16 10 N -0.24 -10.80 10.41 -40.28 -0.42 -11.22 16 11 N -0.66 -31.68 5.99 -172.51 -1.03 -32.72 16 12 C 0.31 17.32 3.23 44.25 0.14 17.47 16 13 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 14 C -0.13 -7.15 9.29 71.98 0.67 -6.48 16 15 C -0.55 -31.11 8.74 25.60 0.22 -30.89 16 16 H 0.06 3.22 7.79 -2.91 -0.02 3.19 16 17 C 0.02 0.98 5.30 84.65 0.45 1.43 16 18 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 19 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 24 H 0.02 0.71 7.81 -2.39 -0.02 0.69 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.05 1.55 5.58 -2.39 -0.01 1.54 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.37 16.64 6.08 -213.32 -1.30 15.34 16 35 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 3.94 6.07 -2.38 -0.01 3.92 16 38 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -67.40 305.48 2.86 -64.54 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.27 Total: 21.78 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 3.80 Total: -20.39 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -1.21 Total: -97.27 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.48 Total: -14.32 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.40 2.86 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.739 kcal (2) G-P(sol) polarization free energy of solvation -67.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds