Wall clock time and date at job start Mon Mar 30 2020 03:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99746 * 2 1 4 4 H 1.08994 * 109.78497 * 30.47449 * 3 2 1 5 5 C 1.53662 * 109.69311 * 151.19488 * 3 2 1 6 6 C 1.52950 * 109.32667 * 174.47353 * 5 3 2 7 7 C 1.52961 * 109.82450 * 296.27147 * 6 5 3 8 8 C 1.53234 * 109.40130 * 63.59567 * 7 6 5 9 9 C 1.51272 * 108.53783 * 305.37965 * 8 7 6 10 10 N 1.28008 * 120.84972 * 231.32636 * 9 8 7 11 11 N 1.40101 * 120.00064 * 4.88522 * 10 9 8 12 12 C 1.46504 * 120.00526 * 174.73309 * 11 10 9 13 13 H 1.09001 * 109.46498 * 29.99678 * 12 11 10 14 14 C 1.52999 * 109.47058 * 270.00207 * 12 11 10 15 15 C 1.50698 * 109.47116 * 149.99699 * 12 11 10 16 16 H 1.07994 * 120.00555 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99613 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00086 * 180.02562 * 17 15 12 19 19 Si 1.86801 * 120.00068 * 0.02562 * 17 15 12 20 20 H 1.48503 * 109.47120 * 270.00169 * 19 17 15 21 21 H 1.48496 * 109.47067 * 29.99852 * 19 17 15 22 22 H 1.48493 * 109.47045 * 150.00136 * 19 17 15 23 23 H 1.08998 * 109.47410 * 60.00392 * 1 2 3 24 24 H 1.09002 * 109.46845 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47371 * 299.99601 * 1 2 3 26 26 H 1.09010 * 109.62688 * 54.45454 * 5 3 2 27 27 H 1.08992 * 109.42534 * 294.37672 * 5 3 2 28 28 H 1.09008 * 109.41716 * 176.16468 * 6 5 3 29 29 H 1.09001 * 109.35854 * 56.34419 * 6 5 3 30 30 H 1.09003 * 109.47984 * 303.62138 * 7 6 5 31 31 H 1.08994 * 109.49862 * 183.58089 * 7 6 5 32 32 H 1.08996 * 109.62625 * 185.66120 * 8 7 6 33 33 H 1.08997 * 109.78531 * 65.18000 * 8 7 6 34 34 H 0.97001 * 120.00007 * 354.73106 * 11 10 9 35 35 H 1.08996 * 109.47168 * 59.99474 * 14 12 11 36 36 H 1.09002 * 109.47018 * 179.97438 * 14 12 11 37 37 H 1.09003 * 109.46864 * 299.99653 * 14 12 11 38 38 H 0.96995 * 120.00583 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3527 2.0020 0.5201 5 6 3.3789 1.2629 0.6971 6 6 4.0535 2.6299 0.5717 7 6 4.3309 2.9383 -0.9006 8 6 3.0029 3.0408 -1.6582 9 6 2.2167 1.7697 -1.4249 10 7 1.7342 1.1066 -2.4077 11 7 2.0169 1.4979 -3.7229 12 6 1.5619 0.6747 -4.8461 13 1 0.6419 0.1595 -4.5696 14 6 2.6388 -0.3554 -5.1927 15 6 1.3049 1.5547 -6.0422 16 1 1.4649 2.6204 -5.9729 17 6 0.8654 0.9990 -7.2251 18 7 0.6416 1.7668 -8.2690 19 14 0.5879 -0.8444 -7.3448 20 1 1.8414 -1.5059 -7.7882 21 1 0.1932 -1.3730 -6.0144 22 1 -0.4913 -1.1197 -8.3269 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 4.0052 0.5040 0.2281 27 1 3.2416 1.0205 1.7508 28 1 4.9936 2.6221 1.1235 29 1 3.3973 3.3959 0.9849 30 1 4.9347 2.1398 -1.3318 31 1 4.8682 3.8834 -0.9794 32 1 3.1977 3.1605 -2.7239 33 1 2.4341 3.8954 -1.2918 34 1 2.5140 2.3139 -3.8899 35 1 2.8247 -0.9918 -4.3275 36 1 2.3000 -0.9682 -6.0281 37 1 3.5588 0.1598 -5.4691 38 1 0.3321 1.3761 -9.1011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:24 Heat of formation + Delta-G solvation = -7.974256 kcal Electronic energy + Delta-G solvation = -17822.581203 eV Core-core repulsion = 15087.014155 eV Total energy + Delta-G solvation = -2735.567048 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.13866 -36.66732 -35.68867 -33.71990 -31.56315 -30.31081 -28.68095 -26.67352 -25.65001 -24.97475 -22.63152 -21.15412 -20.27836 -18.79785 -17.30228 -16.35268 -15.82876 -15.35589 -15.01329 -14.83270 -13.91924 -13.87453 -13.41140 -13.29084 -13.01524 -12.77149 -12.41597 -12.16095 -11.88648 -11.69947 -11.45412 -11.06724 -10.94979 -10.88041 -10.72689 -10.54825 -10.28695 -10.09654 -9.64857 -9.59940 -9.21476 -8.89217 -8.66424 -6.97255 -6.17118 -4.18460 2.86355 3.24922 3.35668 3.38841 3.73754 4.01700 4.33680 4.77944 4.91340 5.06805 5.08923 5.17400 5.23194 5.36576 5.48774 5.59714 5.63178 5.68882 5.82435 5.90918 5.97414 5.99347 6.06617 6.13066 6.33988 6.35856 6.37556 6.54315 6.66202 6.81188 7.05798 7.36424 7.48480 7.61583 8.10915 8.48464 8.83903 9.35644 9.45743 10.95579 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.006275 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.096549 B = 4461.234904 C = 4957.267145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.166 3.834 4 H 0.067 0.933 5 C -0.109 4.109 6 C -0.114 4.114 7 C -0.112 4.112 8 C -0.103 4.103 9 C -0.030 4.030 10 N -0.192 5.192 11 N -0.634 5.634 12 C 0.274 3.726 13 H 0.038 0.962 14 C -0.163 4.163 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.264 1.264 22 H -0.295 1.295 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.372 0.628 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 0.343 17.570 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.289 6.289 3 C 0.106 3.894 4 H 0.084 0.916 5 C -0.148 4.148 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.143 4.143 9 C -0.225 4.225 10 N -0.001 5.001 11 N -0.373 5.373 12 C 0.169 3.831 13 H 0.056 0.944 14 C -0.222 4.222 15 C -0.569 4.569 16 H 0.094 0.906 17 C -0.127 4.127 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.188 1.188 22 H -0.222 1.222 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.212 0.788 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.834 -0.735 16.964 17.407 hybrid contribution 0.293 0.350 -0.456 0.646 sum 4.128 -0.385 16.508 17.020 Atomic orbital electron populations 1.22720 0.81132 1.02401 0.99798 1.87886 1.19663 1.26701 1.94694 1.20806 0.94487 0.84489 0.89656 0.91560 1.21661 0.94922 0.98110 1.00087 1.21455 1.00374 0.96604 0.96732 1.21500 0.96842 1.01565 0.95131 1.20967 0.96112 0.96359 1.00899 1.24842 1.04651 0.97868 0.95142 1.73461 1.12647 1.22459 0.91542 1.48580 1.62657 1.27615 0.98405 1.18759 0.92164 0.89222 0.82916 0.94386 1.22572 1.01279 0.99416 0.98916 1.21099 1.46164 0.95563 0.94118 0.90557 1.24831 0.94414 0.98191 0.95227 1.69871 1.45551 1.35598 1.02266 0.86824 0.77354 0.85751 0.78148 1.20376 1.18849 1.22249 0.93238 0.90086 0.94869 0.90846 0.91203 0.91525 0.91803 0.91778 0.91867 0.91203 0.90944 0.78810 0.94773 0.93764 0.93122 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.69 101.05 1.08 1.56 16 2 O -0.37 -5.82 9.95 -35.23 -0.35 -6.17 16 3 C 0.17 2.29 2.91 -27.26 -0.08 2.22 16 4 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 5 C -0.11 -1.23 5.62 -26.41 -0.15 -1.38 16 6 C -0.11 -1.09 5.80 -26.78 -0.16 -1.25 16 7 C -0.11 -1.27 5.94 -26.63 -0.16 -1.43 16 8 C -0.10 -1.44 5.92 -27.48 -0.16 -1.61 16 9 C -0.03 -0.50 6.43 -78.35 -0.50 -1.01 16 10 N -0.19 -3.91 10.37 35.87 0.37 -3.54 16 11 N -0.63 -14.07 5.99 -5.88 -0.04 -14.10 16 12 C 0.27 6.82 2.82 -69.08 -0.20 6.62 16 13 H 0.04 1.01 7.20 -51.93 -0.37 0.63 16 14 C -0.16 -3.78 9.00 37.16 0.33 -3.45 16 15 C -0.53 -14.96 9.32 -34.44 -0.32 -15.28 16 16 H 0.08 2.30 8.03 -52.49 -0.42 1.88 16 17 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 18 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 19 Si 0.89 22.06 24.38 -169.99 -4.14 17.92 16 20 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 21 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H 0.05 0.75 7.78 -51.93 -0.40 0.35 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.03 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.09 5.57 -51.93 -0.29 0.80 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.37 7.87 6.07 -182.60 -1.11 6.76 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.04 1.04 3.28 -51.93 -0.17 0.87 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -31.03 298.60 -6.29 -37.32 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.00 Total: 3.30 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -0.41 Total: -12.89 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 1.11 Total: -43.99 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.35 Total: -6.17 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.03 -6.29 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.350 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds