Wall clock time and date at job start Mon Mar 30 2020 03:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00075 * 2 1 4 4 H 1.08994 * 109.77981 * 30.48504 * 3 2 1 5 5 C 1.53669 * 109.68774 * 151.19924 * 3 2 1 6 6 C 1.52960 * 109.32174 * 174.47998 * 5 3 2 7 7 C 1.52955 * 109.81796 * 296.27089 * 6 5 3 8 8 C 1.53225 * 109.40594 * 63.59871 * 7 6 5 9 9 C 1.51265 * 109.62865 * 270.00518 * 3 2 1 10 10 N 1.28012 * 120.84913 * 8.96030 * 9 3 2 11 11 N 1.40104 * 119.99813 * 184.60919 * 10 9 3 12 12 C 1.46497 * 119.99900 * 174.72950 * 11 10 9 13 13 H 1.08997 * 109.47146 * 330.00315 * 12 11 10 14 14 C 1.53005 * 109.47096 * 89.99915 * 12 11 10 15 15 C 1.50698 * 109.47589 * 209.99784 * 12 11 10 16 16 H 1.08003 * 119.99409 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00515 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99734 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00340 * 179.72732 * 17 15 12 20 20 H 1.48503 * 109.47017 * 89.99734 * 19 17 15 21 21 H 1.48496 * 109.47256 * 209.99931 * 19 17 15 22 22 H 1.48495 * 109.46819 * 330.00032 * 19 17 15 23 23 H 1.09002 * 109.46783 * 299.99656 * 1 2 3 24 24 H 1.09001 * 109.47102 * 59.99080 * 1 2 3 25 25 H 1.08994 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.62886 * 54.45929 * 5 3 2 27 27 H 1.09001 * 109.42678 * 294.37416 * 5 3 2 28 28 H 1.09003 * 109.41259 * 176.16176 * 6 5 3 29 29 H 1.09005 * 109.35407 * 56.34500 * 6 5 3 30 30 H 1.09002 * 109.47906 * 303.61415 * 7 6 5 31 31 H 1.09003 * 109.48092 * 183.58188 * 7 6 5 32 32 H 1.09001 * 109.62692 * 185.66339 * 8 7 6 33 33 H 1.08992 * 109.78362 * 65.18323 * 8 7 6 34 34 H 0.96999 * 120.00210 * 354.73743 * 11 10 9 35 35 H 1.08997 * 109.46797 * 60.00186 * 14 12 11 36 36 H 1.08998 * 109.47186 * 180.02562 * 14 12 11 37 37 H 1.09002 * 109.47067 * 300.00390 * 14 12 11 38 38 H 0.97005 * 120.00134 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3529 2.0019 0.5203 5 6 3.3791 1.2627 0.6970 6 6 4.0538 2.6297 0.5718 7 6 4.3310 2.9382 -0.9005 8 6 3.0030 3.0408 -1.6580 9 6 2.2168 1.7697 -1.4248 10 7 1.7342 1.1067 -2.4077 11 7 2.0170 1.4982 -3.7229 12 6 1.5619 0.6750 -4.8460 13 1 1.5219 -0.3698 -4.5380 14 6 0.1680 1.1319 -5.2813 15 6 2.5216 0.8227 -5.9985 16 1 3.3845 1.4652 -5.9035 17 6 2.2980 0.1377 -7.1739 18 7 1.2469 -0.6442 -7.2896 19 14 3.4835 0.3267 -8.6051 20 1 4.5526 -0.6987 -8.5011 21 1 2.7490 0.1482 -9.8833 22 1 4.0915 1.6810 -8.5686 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.0053 0.5039 0.2280 27 1 3.2419 1.0202 1.7509 28 1 4.9938 2.6217 1.1235 29 1 3.3976 3.3957 0.9852 30 1 4.9348 2.1397 -1.3317 31 1 4.8683 3.8833 -0.9790 32 1 3.1978 3.1605 -2.7237 33 1 2.4344 3.8954 -1.2915 34 1 2.5142 2.3141 -3.8898 35 1 0.2080 2.1767 -5.5893 36 1 -0.1708 0.5192 -6.1167 37 1 -0.5262 1.0251 -4.4478 38 1 1.0898 -1.1265 -8.1165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771880202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:29 Heat of formation + Delta-G solvation = -35.624260 kcal Electronic energy + Delta-G solvation = -17759.955187 eV Core-core repulsion = 15023.189145 eV Total energy + Delta-G solvation = -2736.766042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27220 -37.96689 -36.95843 -35.43163 -33.04715 -31.32320 -29.73339 -27.84634 -27.29080 -26.66082 -23.73753 -22.41672 -21.82038 -20.05892 -18.79979 -17.77262 -17.06556 -16.87934 -16.24986 -16.02346 -15.39524 -14.87369 -14.77427 -14.46045 -14.30245 -14.18759 -13.57781 -13.42589 -13.10018 -12.89810 -12.71430 -12.65940 -12.30913 -12.12808 -12.09417 -12.00807 -11.85062 -11.48971 -11.40036 -11.09537 -10.81467 -10.58550 -10.17819 -8.51494 -8.18453 -6.36179 1.40058 1.41266 1.51563 1.57720 2.25435 2.49435 2.94899 3.09575 3.74799 3.95076 4.06081 4.16882 4.21230 4.35677 4.51048 4.55189 4.63641 4.66671 4.73988 4.90721 4.91901 4.96451 4.99406 5.10623 5.13002 5.18581 5.24527 5.33529 5.43712 5.49931 5.56933 5.81318 5.89027 6.20006 6.40377 6.46027 6.87260 7.36011 7.95109 8.86449 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.006060 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.200655 B = 4619.448757 C = 5239.707751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.396 6.396 3 C 0.157 3.843 4 H 0.095 0.905 5 C -0.106 4.106 6 C -0.107 4.107 7 C -0.109 4.109 8 C -0.106 4.106 9 C -0.011 4.011 10 N -0.244 5.244 11 N -0.655 5.655 12 C 0.310 3.690 13 H -0.008 1.008 14 C -0.132 4.132 15 C -0.547 4.547 16 H 0.057 0.943 17 C 0.017 3.983 18 N -0.915 5.915 19 Si 0.971 3.029 20 H -0.276 1.276 21 H -0.277 1.277 22 H -0.266 1.266 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.369 0.631 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.015 0.985 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 7.958 16.191 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.315 6.315 3 C 0.097 3.903 4 H 0.113 0.887 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.206 4.206 10 N -0.051 5.051 11 N -0.395 5.395 12 C 0.206 3.794 13 H 0.010 0.990 14 C -0.192 4.192 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.796 3.204 20 H -0.202 1.202 21 H -0.203 1.203 22 H -0.190 1.190 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.208 0.792 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.034 0.966 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.468 6.745 15.654 17.223 hybrid contribution 0.633 0.854 -1.335 1.707 sum 3.102 7.599 14.318 16.504 Atomic orbital electron populations 1.22795 0.80262 1.03078 0.99942 1.87879 1.20869 1.28090 1.94648 1.21244 0.96511 0.84394 0.88167 0.88719 1.21711 0.92969 0.98873 1.00907 1.21466 1.01813 0.95775 0.95350 1.21509 0.95050 1.02115 0.96114 1.21090 0.97635 0.95652 1.00245 1.25812 1.01419 0.97572 0.95837 1.73560 1.15718 1.24332 0.91477 1.48551 1.63944 1.27879 0.99115 1.17997 0.91491 0.88397 0.81510 0.99029 1.21990 0.98119 0.99442 0.99627 1.21518 1.09645 1.28776 0.98700 0.92443 1.25742 0.97227 0.94276 1.01014 1.70029 1.28361 1.29155 1.27808 0.85363 0.78423 0.78725 0.77919 1.20198 1.20259 1.19026 0.91613 0.95832 0.89473 0.93108 0.88623 0.89166 0.89614 0.93886 0.89518 0.93373 0.88574 0.79192 0.95278 0.91417 0.96638 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.69 113.37 1.21 2.19 16 2 O -0.40 -12.93 9.95 -148.98 -1.48 -14.41 16 3 C 0.16 4.28 2.91 30.25 0.09 4.37 16 4 H 0.10 2.05 7.81 -2.39 -0.02 2.03 16 5 C -0.11 -2.27 5.62 30.81 0.17 -2.09 16 6 C -0.11 -1.75 5.81 30.57 0.18 -1.57 16 7 C -0.11 -2.36 5.94 30.65 0.18 -2.18 16 8 C -0.11 -2.93 5.92 30.10 0.18 -2.75 16 9 C -0.01 -0.37 6.43 46.89 0.30 -0.07 16 10 N -0.24 -10.81 10.37 -40.33 -0.42 -11.23 16 11 N -0.66 -31.70 5.99 -172.53 -1.03 -32.74 16 12 C 0.31 17.31 3.23 44.25 0.14 17.45 16 13 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 14 C -0.13 -7.03 9.29 71.98 0.67 -6.36 16 15 C -0.55 -31.30 8.74 25.60 0.22 -31.08 16 16 H 0.06 3.20 7.79 -2.91 -0.02 3.18 16 17 C 0.02 0.98 5.30 84.65 0.45 1.43 16 18 N -0.92 -53.68 11.32 21.45 0.24 -53.43 16 19 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 24 H 0.02 0.75 7.78 -2.39 -0.02 0.73 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.54 5.57 -2.39 -0.01 1.53 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.37 16.64 6.07 -213.32 -1.30 15.34 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 37 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -67.78 305.41 2.86 -64.92 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.27 Total: 21.64 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.80 Total: -20.66 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -1.21 Total: -97.40 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.48 Total: -14.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.78 2.86 -64.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.293 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds