Wall clock time and date at job start Mon Mar 30 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50704 * 120.00103 * 2 1 4 4 C 1.53001 * 109.47049 * 294.99849 * 3 2 1 5 5 H 1.09001 * 110.46031 * 52.39063 * 4 3 2 6 6 C 1.54506 * 110.51408 * 174.99968 * 4 3 2 7 7 C 1.54476 * 104.06173 * 118.64061 * 6 4 3 8 8 O 1.44421 * 104.80698 * 23.98313 * 7 6 4 9 9 C 1.44429 * 105.26971 * 319.48336 * 8 7 6 10 10 N 1.28008 * 120.00344 * 179.97438 * 2 1 3 11 11 N 1.40103 * 119.99903 * 0.02562 * 10 2 1 12 12 C 1.46498 * 120.00076 * 179.72110 * 11 10 2 13 13 H 1.09003 * 109.47031 * 30.00588 * 12 11 10 14 14 C 1.53003 * 109.47307 * 270.00269 * 12 11 10 15 15 C 1.50705 * 109.46910 * 150.00267 * 12 11 10 16 16 H 1.07999 * 119.99977 * 35.00351 * 15 12 11 17 17 C 1.37875 * 119.99772 * 214.99938 * 15 12 11 18 18 N 1.31515 * 120.00104 * 184.91668 * 17 15 12 19 19 Si 1.86804 * 120.00110 * 4.92142 * 17 15 12 20 20 H 1.48498 * 109.47404 * 84.83035 * 19 17 15 21 21 H 1.48501 * 109.47186 * 204.83040 * 19 17 15 22 22 H 1.48500 * 109.46946 * 324.82962 * 19 17 15 23 23 H 1.08994 * 109.47562 * 270.00332 * 1 2 3 24 24 H 1.09005 * 109.46996 * 30.00682 * 1 2 3 25 25 H 1.09000 * 109.46529 * 150.00372 * 1 2 3 26 26 H 1.09007 * 109.47199 * 54.99410 * 3 2 1 27 27 H 1.09000 * 109.47067 * 174.99765 * 3 2 1 28 28 H 1.08997 * 110.51230 * 237.28743 * 6 4 3 29 29 H 1.09001 * 110.50944 * 359.86272 * 6 4 3 30 30 H 1.09006 * 110.37032 * 142.80903 * 7 6 4 31 31 H 1.09005 * 110.37481 * 265.03633 * 7 6 4 32 32 H 1.09001 * 110.37543 * 281.67798 * 9 8 7 33 33 H 1.09002 * 110.36875 * 159.34163 * 9 8 7 34 34 H 0.97000 * 120.00068 * 0.02562 * 11 10 2 35 35 H 1.08995 * 109.47041 * 175.02964 * 14 12 11 36 36 H 1.09004 * 109.46871 * 295.02739 * 14 12 11 37 37 H 1.08998 * 109.46677 * 55.02879 * 14 12 11 38 38 H 0.97003 * 120.00357 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3074 5 1 0.9148 2.1391 -1.4793 6 6 2.6475 3.4484 -1.2812 7 6 3.6525 3.4107 -2.4537 8 8 3.1376 2.4011 -3.3489 9 6 2.6721 1.3352 -2.4926 10 7 2.1471 -1.1085 0.0005 11 7 1.4466 -2.3219 0.0005 12 6 2.1791 -3.5906 -0.0051 13 1 3.1335 -3.4614 0.5055 14 6 2.4287 -4.0291 -1.4496 15 6 1.3673 -4.6425 0.7061 16 1 0.2902 -4.6378 0.6277 17 6 1.9998 -5.6108 1.4566 18 7 1.3007 -6.5845 1.9975 19 14 3.8499 -5.5396 1.7052 20 1 4.1616 -4.6460 2.8495 21 1 4.3642 -6.9037 1.9881 22 1 4.4946 -5.0126 0.4757 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3632 -0.8901 -0.5138 26 1 1.9316 1.9146 0.8418 27 1 3.3288 1.1079 0.0896 28 1 1.9013 4.2264 -1.4426 29 1 3.1661 3.6081 -0.3359 30 1 3.6884 4.3785 -2.9540 31 1 4.6436 3.1326 -2.0952 32 1 3.5123 0.7369 -2.1404 33 1 1.9547 0.7086 -3.0227 34 1 0.4766 -2.3220 -0.0003 35 1 3.0490 -4.9253 -1.4552 36 1 1.4760 -4.2435 -1.9339 37 1 2.9388 -3.2307 -1.9885 38 1 1.7456 -7.2656 2.5259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771883271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:19 Heat of formation + Delta-G solvation = -19.094876 kcal Electronic energy + Delta-G solvation = -17349.272013 eV Core-core repulsion = 14613.222739 eV Total energy + Delta-G solvation = -2736.049274 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56559 -37.28822 -34.83077 -33.15032 -31.71490 -29.96864 -28.67388 -27.29352 -25.77595 -25.13803 -22.87246 -20.71605 -20.07320 -18.83301 -17.14593 -16.48682 -15.75168 -15.60977 -15.20057 -14.98958 -14.11803 -13.94563 -13.49543 -13.13850 -12.84987 -12.57668 -12.35696 -12.12858 -11.91962 -11.79294 -11.53389 -11.16319 -11.08995 -11.00145 -10.77387 -10.61979 -10.58504 -10.06070 -9.87723 -9.81416 -9.40810 -9.09701 -8.66884 -6.92483 -6.21846 -4.24274 2.89276 3.24668 3.32438 3.36203 3.82236 3.97629 4.31980 4.50169 4.68214 4.87425 5.03495 5.13853 5.18662 5.29463 5.42126 5.54543 5.59291 5.61685 5.70064 5.77885 5.80926 5.90779 5.98117 6.02322 6.19760 6.34569 6.47630 6.62602 6.73541 6.75703 6.87072 7.18005 7.33180 7.59923 8.17301 8.45021 8.80991 9.37457 9.41416 10.90488 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036676 B = 0.004997 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.248629 B = 5602.343090 C = 5806.323521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 C -0.035 4.035 4 C -0.114 4.114 5 H 0.084 0.916 6 C -0.151 4.151 7 C 0.044 3.956 8 O -0.381 6.381 9 C 0.052 3.948 10 N -0.217 5.217 11 N -0.634 5.634 12 C 0.266 3.734 13 H 0.041 0.959 14 C -0.150 4.150 15 C -0.525 4.525 16 H 0.075 0.925 17 C 0.079 3.921 18 N -0.891 5.891 19 Si 0.879 3.121 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.262 1.262 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.371 0.629 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.242 18.248 -5.442 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.203 4.203 3 C -0.075 4.075 4 C -0.134 4.134 5 H 0.103 0.897 6 C -0.189 4.189 7 C -0.033 4.033 8 O -0.300 6.300 9 C -0.025 4.025 10 N -0.028 5.028 11 N -0.372 5.372 12 C 0.163 3.837 13 H 0.058 0.942 14 C -0.210 4.210 15 C -0.564 4.564 16 H 0.093 0.907 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.706 3.294 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.187 1.187 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.210 0.790 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.272 17.482 -5.551 18.632 hybrid contribution -0.390 0.004 0.509 0.641 sum 2.882 17.486 -5.043 18.426 Atomic orbital electron populations 1.21036 0.94204 1.02239 1.02144 1.23898 0.93214 0.93228 1.09974 1.20170 0.99999 0.91277 0.96047 1.22527 1.01138 0.94049 0.95725 0.89738 1.23012 0.99030 0.97381 0.99508 1.23381 0.96687 0.92624 0.90628 1.89105 1.80716 1.29934 1.30262 1.23518 0.98385 0.89992 0.90578 1.73448 1.29285 0.93472 1.06577 1.49013 1.06012 0.99593 1.82602 1.18821 0.93128 0.79266 0.92465 0.94156 1.22347 1.00094 0.99190 0.99368 1.21055 0.95306 1.09699 1.30379 0.90678 1.24947 0.98409 0.94843 0.94267 1.69887 1.36305 1.13055 1.33559 0.86836 0.85751 0.77313 0.79527 1.19950 1.21260 1.18657 0.91633 0.91706 0.92113 0.90645 0.90576 0.90795 0.90241 0.89525 0.92374 0.91572 0.89332 0.78995 0.93194 0.93670 0.95479 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.46 36.00 0.34 -1.52 16 2 C -0.01 -0.15 6.21 -78.91 -0.49 -0.64 16 3 C -0.04 -0.42 4.82 -27.88 -0.13 -0.56 16 4 C -0.11 -1.22 3.06 -89.05 -0.27 -1.49 16 5 H 0.08 0.87 6.86 -51.93 -0.36 0.51 16 6 C -0.15 -1.31 6.74 -25.17 -0.17 -1.48 16 7 C 0.04 0.42 7.63 37.93 0.29 0.71 16 8 O -0.38 -5.01 11.65 -35.23 -0.41 -5.42 16 9 C 0.05 0.66 6.85 37.93 0.26 0.91 16 10 N -0.22 -4.22 11.38 35.60 0.41 -3.81 16 11 N -0.63 -13.68 5.93 -5.88 -0.03 -13.71 16 12 C 0.27 6.44 2.89 -69.08 -0.20 6.24 16 13 H 0.04 1.02 5.29 -51.93 -0.27 0.75 16 14 C -0.15 -3.32 9.50 37.16 0.35 -2.96 16 15 C -0.53 -14.48 9.08 -34.44 -0.31 -14.79 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 19 Si 0.88 21.42 26.99 -169.99 -4.59 16.83 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -6.16 6.82 56.52 0.39 -5.77 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.71 6.83 -51.93 -0.35 0.36 16 25 H 0.06 0.89 6.31 -51.93 -0.33 0.56 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.90 7.74 -51.93 -0.40 0.50 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.37 7.68 6.34 -182.59 -1.16 6.52 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -30.25 307.33 -6.72 -36.97 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.06 Total: 3.72 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.43 Total: -13.42 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 1.14 Total: -43.32 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.41 Total: -5.42 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.25 -6.72 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.880 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds