Wall clock time and date at job start Mon Mar 30 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50704 * 120.00103 * 2 1 4 4 C 1.53001 * 109.47049 * 294.99849 * 3 2 1 5 5 H 1.09001 * 110.46031 * 52.39063 * 4 3 2 6 6 C 1.54506 * 110.51408 * 174.99968 * 4 3 2 7 7 C 1.54476 * 104.06173 * 118.64061 * 6 4 3 8 8 O 1.44421 * 104.80698 * 23.98313 * 7 6 4 9 9 C 1.44429 * 105.26971 * 319.48336 * 8 7 6 10 10 N 1.28008 * 120.00344 * 179.97438 * 2 1 3 11 11 N 1.40103 * 119.99903 * 0.02562 * 10 2 1 12 12 C 1.46498 * 120.00076 * 179.72110 * 11 10 2 13 13 H 1.09003 * 109.47031 * 30.00588 * 12 11 10 14 14 C 1.53003 * 109.47307 * 270.00269 * 12 11 10 15 15 C 1.50705 * 109.46910 * 150.00267 * 12 11 10 16 16 H 1.07999 * 119.99977 * 35.00351 * 15 12 11 17 17 C 1.37875 * 119.99772 * 214.99938 * 15 12 11 18 18 N 1.31515 * 120.00104 * 184.91668 * 17 15 12 19 19 Si 1.86804 * 120.00110 * 4.92142 * 17 15 12 20 20 H 1.48498 * 109.47404 * 84.83035 * 19 17 15 21 21 H 1.48501 * 109.47186 * 204.83040 * 19 17 15 22 22 H 1.48500 * 109.46946 * 324.82962 * 19 17 15 23 23 H 1.08994 * 109.47562 * 270.00332 * 1 2 3 24 24 H 1.09005 * 109.46996 * 30.00682 * 1 2 3 25 25 H 1.09000 * 109.46529 * 150.00372 * 1 2 3 26 26 H 1.09007 * 109.47199 * 54.99410 * 3 2 1 27 27 H 1.09000 * 109.47067 * 174.99765 * 3 2 1 28 28 H 1.08997 * 110.51230 * 237.28743 * 6 4 3 29 29 H 1.09001 * 110.50944 * 359.86272 * 6 4 3 30 30 H 1.09006 * 110.37032 * 142.80903 * 7 6 4 31 31 H 1.09005 * 110.37481 * 265.03633 * 7 6 4 32 32 H 1.09001 * 110.37543 * 281.67798 * 9 8 7 33 33 H 1.09002 * 110.36875 * 159.34163 * 9 8 7 34 34 H 0.97000 * 120.00068 * 0.02562 * 11 10 2 35 35 H 1.08995 * 109.47041 * 175.02964 * 14 12 11 36 36 H 1.09004 * 109.46871 * 295.02739 * 14 12 11 37 37 H 1.08998 * 109.46677 * 55.02879 * 14 12 11 38 38 H 0.97003 * 120.00357 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3074 5 1 0.9148 2.1391 -1.4793 6 6 2.6475 3.4484 -1.2812 7 6 3.6525 3.4107 -2.4537 8 8 3.1376 2.4011 -3.3489 9 6 2.6721 1.3352 -2.4926 10 7 2.1471 -1.1085 0.0005 11 7 1.4466 -2.3219 0.0005 12 6 2.1791 -3.5906 -0.0051 13 1 3.1335 -3.4614 0.5055 14 6 2.4287 -4.0291 -1.4496 15 6 1.3673 -4.6425 0.7061 16 1 0.2902 -4.6378 0.6277 17 6 1.9998 -5.6108 1.4566 18 7 1.3007 -6.5845 1.9975 19 14 3.8499 -5.5396 1.7052 20 1 4.1616 -4.6460 2.8495 21 1 4.3642 -6.9037 1.9881 22 1 4.4946 -5.0126 0.4757 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3632 -0.8901 -0.5138 26 1 1.9316 1.9146 0.8418 27 1 3.3288 1.1079 0.0896 28 1 1.9013 4.2264 -1.4426 29 1 3.1661 3.6081 -0.3359 30 1 3.6884 4.3785 -2.9540 31 1 4.6436 3.1326 -2.0952 32 1 3.5123 0.7369 -2.1404 33 1 1.9547 0.7086 -3.0227 34 1 0.4766 -2.3220 -0.0003 35 1 3.0490 -4.9253 -1.4552 36 1 1.4760 -4.2435 -1.9339 37 1 2.9388 -3.2307 -1.9885 38 1 1.7456 -7.2656 2.5259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771883271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:18 Heat of formation + Delta-G solvation = -39.618038 kcal Electronic energy + Delta-G solvation = -17350.161964 eV Core-core repulsion = 14613.222739 eV Total energy + Delta-G solvation = -2736.939225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46786 -38.66862 -36.45179 -34.58167 -33.44514 -31.07617 -29.79142 -28.60905 -27.31993 -26.81920 -23.71679 -22.16364 -21.35214 -20.27494 -18.86221 -17.69457 -17.03349 -16.75017 -16.51539 -16.06712 -15.68775 -15.12386 -14.77535 -14.54061 -14.52471 -14.03368 -13.67879 -13.53248 -13.09866 -12.96713 -12.81750 -12.73593 -12.45775 -12.37947 -12.10802 -11.88766 -11.80814 -11.55342 -11.36914 -11.21392 -10.81876 -10.72212 -10.62565 -8.49631 -8.37944 -6.44734 1.32260 1.34249 1.45444 1.60085 2.28346 2.32409 3.04631 3.12099 3.64338 3.84640 4.05479 4.07362 4.25606 4.34180 4.44760 4.47286 4.53817 4.62328 4.73054 4.78148 4.86472 4.89521 4.91747 4.95077 4.97154 5.02520 5.09309 5.21289 5.29983 5.41790 5.48604 5.51693 5.84826 5.91100 6.20319 6.57298 6.69608 7.24210 7.91436 8.78076 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036676 B = 0.004997 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.248629 B = 5602.343090 C = 5806.323521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.025 3.975 3 C -0.035 4.035 4 C -0.107 4.107 5 H 0.094 0.906 6 C -0.143 4.143 7 C 0.034 3.966 8 O -0.405 6.405 9 C 0.049 3.951 10 N -0.263 5.263 11 N -0.654 5.654 12 C 0.274 3.726 13 H 0.030 0.970 14 C -0.143 4.143 15 C -0.528 4.528 16 H 0.039 0.961 17 C 0.026 3.974 18 N -0.938 5.938 19 Si 0.941 3.059 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.247 1.247 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.370 0.630 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 21.170 -5.549 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.074 4.074 4 C -0.127 4.127 5 H 0.113 0.887 6 C -0.180 4.180 7 C -0.042 4.042 8 O -0.324 6.324 9 C -0.028 4.028 10 N -0.071 5.071 11 N -0.392 5.392 12 C 0.170 3.830 13 H 0.048 0.952 14 C -0.202 4.202 15 C -0.567 4.567 16 H 0.057 0.943 17 C -0.174 4.174 18 N -0.577 5.577 19 Si 0.764 3.236 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.171 1.171 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.065 0.935 26 H 0.124 0.876 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.209 0.791 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.166 20.424 -5.670 21.602 hybrid contribution -0.774 -0.667 0.501 1.138 sum 3.392 19.757 -5.168 20.701 Atomic orbital electron populations 1.21133 0.92851 1.03208 1.02855 1.24796 0.94703 0.93517 1.03971 1.20350 0.99373 0.89703 0.98004 1.22468 1.01698 0.94847 0.93681 0.88739 1.23000 0.99054 0.96173 0.99805 1.23640 0.97088 0.92575 0.90906 1.89084 1.81058 1.30671 1.31617 1.23479 0.97779 0.90180 0.91358 1.73510 1.29511 0.93442 1.10684 1.48519 1.05620 0.99963 1.85114 1.18514 0.91999 0.79718 0.92818 0.95164 1.22225 1.00149 0.99504 0.98331 1.21269 0.94047 1.10920 1.30504 0.94274 1.25752 1.03118 0.94381 0.94124 1.70012 1.38379 1.14183 1.35082 0.85851 0.80192 0.77608 0.79915 1.19741 1.20466 1.17110 0.90960 0.88352 0.93537 0.87620 0.91071 0.89065 0.88543 0.87689 0.92094 0.93133 0.90499 0.79116 0.93344 0.93845 0.93993 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.46 71.23 0.67 -2.83 16 2 C 0.02 0.70 6.21 46.53 0.29 0.99 16 3 C -0.03 -0.71 4.82 29.85 0.14 -0.57 16 4 C -0.11 -1.91 3.06 -9.78 -0.03 -1.94 16 5 H 0.09 1.54 6.86 -2.39 -0.02 1.52 16 6 C -0.14 -1.87 6.74 31.61 0.21 -1.66 16 7 C 0.03 0.56 7.63 72.48 0.55 1.11 16 8 O -0.40 -9.97 11.65 -148.98 -1.74 -11.70 16 9 C 0.05 1.16 6.85 72.49 0.50 1.66 16 10 N -0.26 -9.99 11.38 -41.20 -0.47 -10.46 16 11 N -0.65 -28.44 5.93 -172.51 -1.02 -29.46 16 12 C 0.27 13.36 2.89 44.25 0.13 13.48 16 13 H 0.03 1.53 5.29 -2.39 -0.01 1.52 16 14 C -0.14 -6.26 9.50 71.98 0.68 -5.58 16 15 C -0.53 -30.01 9.08 25.60 0.23 -29.77 16 16 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 17 C 0.03 1.49 5.47 84.65 0.46 1.95 16 18 N -0.94 -57.45 13.96 21.45 0.30 -57.15 16 19 Si 0.94 44.41 26.99 68.60 1.85 46.26 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.25 -11.00 6.82 99.48 0.68 -10.32 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.10 1.79 6.83 -2.38 -0.02 1.77 16 25 H 0.05 1.32 6.31 -2.39 -0.02 1.31 16 26 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.07 1.58 7.93 -2.39 -0.02 1.57 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.98 7.73 -2.39 -0.02 0.96 16 30 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 32 H 0.05 1.34 7.74 -2.39 -0.02 1.32 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.37 15.66 6.34 -213.32 -1.35 14.31 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -66.99 307.33 2.42 -64.56 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.34 Total: 21.10 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 3.85 Total: -23.15 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -1.19 Total: -97.07 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -1.74 Total: -11.70 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.85 Total: 46.26 kcal Total: -66.99 2.42 -64.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.943 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds