Wall clock time and date at job start Mon Mar 30 2020 03:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28014 * 120.00077 * 2 1 4 4 N 1.40104 * 119.99535 * 0.02562 * 3 2 1 5 5 C 1.46506 * 119.99589 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47214 * 29.99407 * 5 4 3 7 7 C 1.53000 * 109.46992 * 269.99635 * 5 4 3 8 8 C 1.50691 * 109.47156 * 149.99829 * 5 4 3 9 9 H 1.08008 * 120.00097 * 359.97438 * 8 5 4 10 10 C 1.37877 * 120.00241 * 179.97438 * 8 5 4 11 11 N 1.31511 * 119.99774 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00058 * 179.97438 * 10 8 5 13 13 H 1.48507 * 109.47153 * 89.99954 * 12 10 8 14 14 H 1.48505 * 109.46970 * 209.99858 * 12 10 8 15 15 H 1.48496 * 109.47226 * 329.99664 * 12 10 8 16 16 C 1.50700 * 120.00051 * 180.02562 * 2 1 3 17 17 C 1.53175 * 109.54326 * 294.55412 * 16 2 1 18 18 C 1.53091 * 109.16172 * 183.15289 * 17 16 2 19 19 O 1.42900 * 109.41789 * 57.60729 * 18 17 16 20 20 C 1.42906 * 114.10106 * 298.84707 * 19 18 17 21 21 C 1.53085 * 109.41545 * 61.15217 * 20 19 18 22 22 H 1.08999 * 109.47280 * 89.99764 * 1 2 3 23 23 H 1.08997 * 109.47027 * 209.99724 * 1 2 3 24 24 H 1.09000 * 109.47497 * 329.99958 * 1 2 3 25 25 H 0.96999 * 120.00331 * 359.97438 * 4 3 2 26 26 H 1.09000 * 109.47214 * 59.99715 * 7 5 4 27 27 H 1.09002 * 109.47131 * 180.02562 * 7 5 4 28 28 H 1.09004 * 109.47390 * 300.00092 * 7 5 4 29 29 H 0.97002 * 119.99965 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.54439 * 54.82745 * 16 2 1 31 31 H 1.08990 * 109.52416 * 303.05670 * 17 16 2 32 32 H 1.08994 * 109.51871 * 63.25325 * 17 16 2 33 33 H 1.09004 * 109.48293 * 297.62904 * 18 17 16 34 34 H 1.09001 * 109.48377 * 177.59414 * 18 17 16 35 35 H 1.09002 * 109.47564 * 301.16989 * 20 19 18 36 36 H 1.08997 * 109.49195 * 181.14403 * 20 19 18 37 37 H 1.09003 * 109.52277 * 182.49163 * 21 20 19 38 38 H 1.09001 * 109.52598 * 62.30134 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1470 1.1086 0.0000 4 7 1.4464 2.3219 0.0005 5 6 2.1790 3.5907 0.0011 6 1 3.1314 3.4606 -0.5127 7 6 2.4339 4.0317 1.4438 8 6 1.3646 4.6412 -0.7088 9 1 0.3981 4.3889 -1.1198 10 6 1.8532 5.9244 -0.8338 11 7 3.0297 6.2317 -0.3329 12 14 0.8439 7.2265 -1.7145 13 1 -0.0308 7.9208 -0.7356 14 1 1.7545 8.2120 -2.3508 15 1 0.0058 6.5818 -2.7571 16 6 2.2605 -1.3051 -0.0006 17 6 1.9972 -2.0494 1.3121 18 6 2.8276 -3.3352 1.3359 19 8 4.2109 -3.0103 1.1837 20 6 4.5244 -2.3549 -0.0469 21 6 3.7621 -1.0298 -0.1263 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 0.4764 2.3219 0.0005 26 1 3.0229 3.2718 1.9574 27 1 2.9785 4.9759 1.4443 28 1 1.4814 4.1618 1.9577 29 1 3.3733 7.1346 -0.4205 30 1 1.9303 -1.9164 -0.8405 31 1 2.2813 -1.4167 2.1528 32 1 0.9384 -2.2982 1.3835 33 1 2.5150 -3.9852 0.5186 34 1 2.6770 -3.8477 2.2861 35 1 4.2338 -2.9921 -0.8822 36 1 5.5960 -2.1612 -0.0931 37 1 3.9654 -0.5493 -1.0834 38 1 4.0818 -0.3764 0.6855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771887033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:57 Heat of formation + Delta-G solvation = -39.458949 kcal Electronic energy + Delta-G solvation = -17484.862380 eV Core-core repulsion = 14747.930054 eV Total energy + Delta-G solvation = -2736.932327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43676 -38.52026 -36.50871 -34.58973 -32.80270 -32.02627 -30.08467 -28.39781 -27.28372 -25.87700 -24.26935 -22.44465 -21.44340 -20.12390 -18.50991 -17.36405 -16.96533 -16.82855 -16.36203 -15.92752 -15.56506 -15.28522 -14.89073 -14.63470 -14.30538 -14.01910 -13.74748 -13.22846 -13.14889 -12.90780 -12.77655 -12.69041 -12.35333 -12.22324 -12.16225 -12.04335 -11.80550 -11.55242 -11.23313 -11.07374 -10.62387 -10.56323 -10.35927 -8.50221 -8.17570 -6.35114 1.41378 1.42157 1.52827 1.62344 2.27787 2.53320 3.06596 3.10620 3.68839 3.91996 4.00367 4.15847 4.32115 4.39819 4.44881 4.59238 4.64724 4.72583 4.74327 4.79416 4.87141 4.88859 4.95896 4.99983 5.12413 5.14504 5.28405 5.34228 5.46595 5.49664 5.60578 5.82614 5.92813 6.25450 6.36201 6.47409 6.88707 7.37242 7.96735 8.87253 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042793 B = 0.004789 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.155621 B = 5845.452477 C = 6113.511704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 N -0.259 5.259 4 N -0.654 5.654 5 C 0.310 3.690 6 H -0.005 1.005 7 C -0.134 4.134 8 C -0.546 4.546 9 H 0.058 0.942 10 C 0.018 3.982 11 N -0.915 5.915 12 Si 0.971 3.029 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.269 1.269 16 C -0.015 4.015 17 C -0.140 4.140 18 C 0.060 3.940 19 O -0.407 6.407 20 C 0.065 3.935 21 C -0.139 4.139 22 H 0.075 0.925 23 H 0.100 0.900 24 H 0.046 0.954 25 H 0.370 0.630 26 H 0.013 0.987 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -17.957 0.767 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 N -0.067 5.067 4 N -0.393 5.393 5 C 0.206 3.794 6 H 0.013 0.987 7 C -0.193 4.193 8 C -0.585 4.585 9 H 0.077 0.923 10 C -0.182 4.182 11 N -0.554 5.554 12 Si 0.796 3.204 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.194 1.194 16 C -0.035 4.035 17 C -0.178 4.178 18 C -0.016 4.016 19 O -0.327 6.327 20 C -0.012 4.012 21 C -0.177 4.177 22 H 0.093 0.907 23 H 0.118 0.882 24 H 0.065 0.935 25 H 0.209 0.791 26 H 0.032 0.968 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.301 -17.259 0.918 17.436 hybrid contribution -1.549 1.189 -0.474 2.009 sum -3.850 -16.071 0.444 16.532 Atomic orbital electron populations 1.21106 0.92301 1.03328 1.02954 1.24747 0.94738 0.93319 1.04664 1.73540 1.29507 0.93498 1.10162 1.48437 1.05507 1.00245 1.85106 1.17994 0.90990 0.78407 0.92055 0.98678 1.22012 0.98758 1.00495 0.98080 1.21522 1.04661 0.95264 1.37096 0.92339 1.25731 0.96140 1.00309 0.96050 1.70026 1.18869 1.20778 1.45711 0.85366 0.78280 0.78187 0.78605 1.19680 1.20618 1.19378 1.19939 0.93370 0.90614 0.99578 1.22194 1.02238 0.97282 0.96126 1.22762 0.80250 0.95102 1.03518 1.87893 1.26626 1.78289 1.39869 1.22655 1.00176 0.91716 0.86607 1.22000 0.95470 0.98165 1.02100 0.90687 0.88173 0.93493 0.79128 0.96787 0.91426 0.95377 0.92442 0.87618 0.93323 0.88298 0.90923 0.87436 0.91066 0.88604 0.91869 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.46 71.23 0.67 -2.88 16 2 C 0.02 0.63 6.44 46.53 0.30 0.93 16 3 N -0.26 -10.86 10.12 -41.20 -0.42 -11.28 16 4 N -0.65 -30.56 5.93 -172.52 -1.02 -31.59 16 5 C 0.31 16.89 3.23 44.24 0.14 17.03 16 6 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 7 C -0.13 -7.06 9.29 71.98 0.67 -6.39 16 8 C -0.55 -30.61 8.74 25.60 0.22 -30.39 16 9 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 10 C 0.02 0.98 5.30 84.66 0.45 1.43 16 11 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 12 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 C -0.01 -0.36 2.56 -11.42 -0.03 -0.38 16 17 C -0.14 -2.81 5.26 30.68 0.16 -2.64 16 18 C 0.06 1.03 6.84 72.01 0.49 1.52 16 19 O -0.41 -9.66 10.77 -148.98 -1.60 -11.27 16 20 C 0.06 1.41 6.84 72.01 0.49 1.90 16 21 C -0.14 -3.85 4.71 30.68 0.14 -3.71 16 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.10 1.87 7.02 -2.39 -0.02 1.85 16 24 H 0.05 1.37 6.31 -2.39 -0.02 1.36 16 25 H 0.37 16.09 6.31 -213.32 -1.35 14.75 16 26 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 28 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.48 7.16 -2.39 -0.02 1.46 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.58 7.90 -2.39 -0.02 1.56 16 Total: -1.00 -65.48 304.11 2.63 -62.85 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.31 Total: 22.38 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.72 Total: -23.58 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -1.20 Total: -95.67 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.60 Total: -11.27 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.48 2.63 -62.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.394 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds