Wall clock time and date at job start Mon Mar 30 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28011 * 120.00357 * 2 1 4 4 N 1.40094 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.46503 * 120.00288 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.47014 * 29.99955 * 5 4 3 7 7 C 1.52996 * 109.47439 * 270.00036 * 5 4 3 8 8 C 1.50702 * 109.47420 * 149.99749 * 5 4 3 9 9 H 1.08000 * 119.99548 * 359.97438 * 8 5 4 10 10 C 1.37874 * 120.00038 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00009 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 119.99838 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47262 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47297 * 119.99640 * 12 10 8 15 15 H 1.48500 * 109.47244 * 239.99532 * 12 10 8 16 16 C 1.50704 * 119.99657 * 180.02562 * 2 1 3 17 17 H 1.08992 * 109.57649 * 304.83826 * 16 2 1 18 18 C 1.53207 * 109.53527 * 184.67744 * 16 2 1 19 19 C 1.53178 * 109.03992 * 183.11713 * 18 16 2 20 20 C 1.53097 * 109.16320 * 56.98185 * 19 18 16 21 21 O 1.42898 * 109.41490 * 302.39102 * 20 19 18 22 22 C 1.42905 * 114.09851 * 61.15689 * 21 20 19 23 23 H 1.08998 * 109.47380 * 270.00230 * 1 2 3 24 24 H 1.09010 * 109.46720 * 29.99505 * 1 2 3 25 25 H 1.08993 * 109.47621 * 149.99285 * 1 2 3 26 26 H 0.97006 * 120.00130 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.47155 * 179.97438 * 7 5 4 28 28 H 1.08996 * 109.47048 * 300.00371 * 7 5 4 29 29 H 1.09012 * 109.46806 * 59.99691 * 7 5 4 30 30 H 0.97003 * 119.99548 * 180.02562 * 11 10 8 31 31 H 1.09004 * 109.54239 * 63.25237 * 18 16 2 32 32 H 1.09000 * 109.61720 * 303.02796 * 18 16 2 33 33 H 1.09003 * 109.52669 * 297.07816 * 19 18 16 34 34 H 1.09005 * 109.57705 * 176.91879 * 19 18 16 35 35 H 1.08995 * 109.47859 * 182.40411 * 20 19 18 36 36 H 1.09000 * 109.47425 * 62.37437 * 20 19 18 37 37 H 1.09002 * 109.48053 * 58.82596 * 22 21 20 38 38 H 1.08999 * 109.48097 * 178.85162 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1471 1.1086 0.0000 4 7 1.4467 2.3219 0.0005 5 6 2.1792 3.5906 0.0011 6 1 3.1317 3.4605 -0.5128 7 6 2.4342 4.0317 1.4437 8 6 1.3648 4.6412 -0.7089 9 1 0.3984 4.3889 -1.1198 10 6 1.8539 5.9242 -0.8347 11 7 3.0309 6.2312 -0.3347 12 14 0.8441 7.2266 -1.7141 13 1 -0.4336 6.6309 -2.1807 14 1 0.5574 8.3450 -0.7801 15 1 1.6060 7.7393 -2.8811 16 6 2.2604 -1.3052 -0.0006 17 1 1.9349 -1.9151 0.8420 18 6 3.7628 -1.0295 0.1173 19 6 4.5223 -2.3573 0.0372 20 6 4.1624 -3.0640 -1.2723 21 8 2.7485 -3.2623 -1.3320 22 6 1.9881 -2.0525 -1.3086 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8898 -0.5139 26 1 0.4766 2.3219 0.0005 27 1 2.9796 4.9754 1.4441 28 1 1.4819 4.1617 1.9576 29 1 3.0233 3.2717 1.9573 30 1 3.3748 7.1339 -0.4230 31 1 3.9712 -0.5473 1.0724 32 1 4.0803 -0.3781 -0.6970 33 1 4.2424 -2.9885 0.8806 34 1 5.5952 -2.1666 0.0652 35 1 4.6670 -4.0291 -1.3151 36 1 4.4793 -2.4502 -2.1155 37 1 2.2765 -1.4256 -2.1524 38 1 0.9263 -2.2892 -1.3777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779785968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:39 Heat of formation + Delta-G solvation = -21.269732 kcal Electronic energy + Delta-G solvation = -17494.565323 eV Core-core repulsion = 14758.421740 eV Total energy + Delta-G solvation = -2736.143583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42149 -37.06307 -34.69158 -33.17397 -31.94804 -30.40539 -28.43724 -26.75227 -25.19055 -24.73688 -23.55020 -20.61983 -20.17836 -18.66362 -16.81344 -16.06296 -15.98190 -15.23038 -15.05115 -14.68584 -14.35649 -13.76545 -13.42562 -13.16918 -12.80428 -12.51616 -12.46047 -12.02130 -11.77508 -11.28963 -11.26403 -11.04296 -10.94377 -10.75289 -10.61111 -10.36413 -10.27297 -10.16000 -10.06774 -9.40475 -9.27307 -8.93757 -8.50459 -6.83575 -6.12638 -4.20437 2.96024 3.23163 3.30879 3.34172 3.80979 4.04088 4.38762 4.84423 4.93586 5.00080 5.16853 5.19772 5.25748 5.39378 5.50241 5.57772 5.67633 5.80712 5.82511 5.89219 5.97824 6.02850 6.09527 6.36604 6.49748 6.57680 6.79766 7.02516 7.11416 7.20399 7.22630 7.60592 7.82233 7.90419 8.20863 8.37617 8.89322 9.45849 9.49111 10.93284 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037176 B = 0.004878 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.989144 B = 5738.253092 C = 5920.774243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 N -0.203 5.203 4 N -0.636 5.636 5 C 0.299 3.701 6 H 0.038 0.962 7 C -0.149 4.149 8 C -0.528 4.528 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.886 5.886 12 Si 0.901 3.099 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.042 4.042 17 H 0.083 0.917 18 C -0.108 4.108 19 C -0.157 4.157 20 C 0.059 3.941 21 O -0.386 6.386 22 C 0.070 3.930 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.368 0.632 27 H 0.088 0.912 28 H 0.024 0.976 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -14.869 0.206 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.208 4.208 3 N -0.014 5.014 4 N -0.374 5.374 5 C 0.196 3.804 6 H 0.056 0.944 7 C -0.208 4.208 8 C -0.567 4.567 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.524 5.524 12 Si 0.729 3.271 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.063 4.063 17 H 0.101 0.899 18 C -0.145 4.145 19 C -0.195 4.195 20 C -0.018 4.018 21 O -0.304 6.304 22 C -0.007 4.007 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.205 0.795 27 H 0.107 0.893 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.645 -14.300 0.212 14.316 hybrid contribution -1.615 0.964 -0.327 1.909 sum -0.970 -13.337 -0.115 13.372 Atomic orbital electron populations 1.21027 0.94174 1.02387 1.01942 1.23696 0.92860 0.93013 1.11184 1.73434 1.28906 0.93282 1.05787 1.48950 1.05894 1.00230 1.82374 1.18443 0.92616 0.76640 0.92680 0.94380 1.22194 0.99046 1.01621 0.97967 1.21287 1.04477 0.94450 1.36492 0.92318 1.24859 0.95118 0.98244 0.95465 1.69906 1.17451 1.20179 1.44906 0.86395 0.80104 0.81287 0.79324 1.19809 1.20858 1.20859 1.20288 0.95152 0.92120 0.98717 0.89894 1.21457 0.93324 0.95980 1.03760 1.22244 1.00791 0.97806 0.98631 1.22578 0.81887 1.00595 0.96705 1.87894 1.17445 1.30433 1.94646 1.22609 0.96006 0.85820 0.96289 0.91838 0.91981 0.91682 0.79471 0.89345 0.95694 0.97010 0.92686 0.91132 0.90904 0.91379 0.91012 0.89309 0.93202 0.92892 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.46 36.00 0.34 -1.57 16 2 C -0.01 -0.23 6.45 -78.91 -0.51 -0.74 16 3 N -0.20 -4.10 10.13 35.60 0.36 -3.74 16 4 N -0.64 -14.23 5.93 -5.88 -0.03 -14.26 16 5 C 0.30 7.71 3.23 -69.08 -0.22 7.49 16 6 H 0.04 1.10 8.14 -51.92 -0.42 0.67 16 7 C -0.15 -3.73 9.29 37.16 0.35 -3.38 16 8 C -0.53 -14.32 8.74 -34.44 -0.30 -14.62 16 9 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 10 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 11 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 12 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C -0.04 -0.57 2.68 -91.62 -0.25 -0.82 16 17 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.11 -1.49 4.60 -26.53 -0.12 -1.61 16 19 C -0.16 -1.73 6.14 -26.59 -0.16 -1.90 16 20 C 0.06 0.64 6.84 37.21 0.25 0.90 16 21 O -0.39 -4.97 10.77 -35.23 -0.38 -5.35 16 22 C 0.07 0.89 5.97 37.20 0.22 1.11 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.95 6.31 -51.92 -0.33 0.62 16 25 H 0.06 0.75 6.97 -51.93 -0.36 0.39 16 26 H 0.37 7.73 6.31 -182.60 -1.15 6.58 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.04 7.11 -51.93 -0.37 0.67 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -28.63 304.04 -7.49 -36.12 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.13 Total: 4.50 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -0.50 Total: -13.45 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.95 Total: -42.26 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.38 Total: -5.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.63 -7.49 -36.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779785968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.847 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds