Wall clock time and date at job start Mon Mar 30 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28011 * 120.00357 * 2 1 4 4 N 1.40094 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.46503 * 120.00288 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.47014 * 29.99955 * 5 4 3 7 7 C 1.52996 * 109.47439 * 270.00036 * 5 4 3 8 8 C 1.50702 * 109.47420 * 149.99749 * 5 4 3 9 9 H 1.08000 * 119.99548 * 359.97438 * 8 5 4 10 10 C 1.37874 * 120.00038 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00009 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 119.99838 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47262 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47297 * 119.99640 * 12 10 8 15 15 H 1.48500 * 109.47244 * 239.99532 * 12 10 8 16 16 C 1.50704 * 119.99657 * 180.02562 * 2 1 3 17 17 H 1.08992 * 109.57649 * 304.83826 * 16 2 1 18 18 C 1.53207 * 109.53527 * 184.67744 * 16 2 1 19 19 C 1.53178 * 109.03992 * 183.11713 * 18 16 2 20 20 C 1.53097 * 109.16320 * 56.98185 * 19 18 16 21 21 O 1.42898 * 109.41490 * 302.39102 * 20 19 18 22 22 C 1.42905 * 114.09851 * 61.15689 * 21 20 19 23 23 H 1.08998 * 109.47380 * 270.00230 * 1 2 3 24 24 H 1.09010 * 109.46720 * 29.99505 * 1 2 3 25 25 H 1.08993 * 109.47621 * 149.99285 * 1 2 3 26 26 H 0.97006 * 120.00130 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.47155 * 179.97438 * 7 5 4 28 28 H 1.08996 * 109.47048 * 300.00371 * 7 5 4 29 29 H 1.09012 * 109.46806 * 59.99691 * 7 5 4 30 30 H 0.97003 * 119.99548 * 180.02562 * 11 10 8 31 31 H 1.09004 * 109.54239 * 63.25237 * 18 16 2 32 32 H 1.09000 * 109.61720 * 303.02796 * 18 16 2 33 33 H 1.09003 * 109.52669 * 297.07816 * 19 18 16 34 34 H 1.09005 * 109.57705 * 176.91879 * 19 18 16 35 35 H 1.08995 * 109.47859 * 182.40411 * 20 19 18 36 36 H 1.09000 * 109.47425 * 62.37437 * 20 19 18 37 37 H 1.09002 * 109.48053 * 58.82596 * 22 21 20 38 38 H 1.08999 * 109.48097 * 178.85162 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1471 1.1086 0.0000 4 7 1.4467 2.3219 0.0005 5 6 2.1792 3.5906 0.0011 6 1 3.1317 3.4605 -0.5128 7 6 2.4342 4.0317 1.4437 8 6 1.3648 4.6412 -0.7089 9 1 0.3984 4.3889 -1.1198 10 6 1.8539 5.9242 -0.8347 11 7 3.0309 6.2312 -0.3347 12 14 0.8441 7.2266 -1.7141 13 1 -0.4336 6.6309 -2.1807 14 1 0.5574 8.3450 -0.7801 15 1 1.6060 7.7393 -2.8811 16 6 2.2604 -1.3052 -0.0006 17 1 1.9349 -1.9151 0.8420 18 6 3.7628 -1.0295 0.1173 19 6 4.5223 -2.3573 0.0372 20 6 4.1624 -3.0640 -1.2723 21 8 2.7485 -3.2623 -1.3320 22 6 1.9881 -2.0525 -1.3086 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8898 -0.5139 26 1 0.4766 2.3219 0.0005 27 1 2.9796 4.9754 1.4441 28 1 1.4819 4.1617 1.9576 29 1 3.0233 3.2717 1.9573 30 1 3.3748 7.1339 -0.4230 31 1 3.9712 -0.5473 1.0724 32 1 4.0803 -0.3781 -0.6970 33 1 4.2424 -2.9885 0.8806 34 1 5.5952 -2.1666 0.0652 35 1 4.6670 -4.0291 -1.3151 36 1 4.4793 -2.4502 -2.1155 37 1 2.2765 -1.4256 -2.1524 38 1 0.9263 -2.2892 -1.3777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779785968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:39 Heat of formation + Delta-G solvation = -39.124758 kcal Electronic energy + Delta-G solvation = -17495.339575 eV Core-core repulsion = 14758.421740 eV Total energy + Delta-G solvation = -2736.917835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48882 -38.50074 -36.43818 -34.54144 -33.40310 -31.90631 -29.72808 -28.38074 -27.26387 -25.75861 -24.70084 -22.35686 -21.39515 -20.16468 -18.51656 -17.37018 -17.04111 -16.89549 -16.51628 -15.80424 -15.75488 -15.18019 -14.70229 -14.45724 -14.34334 -14.04393 -13.72896 -13.51610 -13.16554 -12.92759 -12.87025 -12.69537 -12.30460 -12.26169 -12.11002 -12.02894 -11.80093 -11.65365 -11.24147 -11.05968 -10.61083 -10.55396 -10.42963 -8.51390 -8.17767 -6.34964 1.40986 1.41861 1.53766 1.57995 2.25981 2.50836 2.99793 3.10702 3.73122 3.88633 4.00838 4.09822 4.25521 4.33191 4.43233 4.51071 4.64892 4.72511 4.74227 4.80561 4.86218 4.96938 4.97200 5.02548 5.12707 5.14155 5.22351 5.31145 5.44995 5.46415 5.60034 5.83075 5.92441 6.24491 6.26191 6.47107 6.88634 7.37370 7.94378 8.87171 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037176 B = 0.004878 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.989144 B = 5738.253092 C = 5920.774243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.019 3.981 3 N -0.253 5.253 4 N -0.652 5.652 5 C 0.309 3.691 6 H -0.004 1.004 7 C -0.134 4.134 8 C -0.545 4.545 9 H 0.058 0.942 10 C 0.018 3.982 11 N -0.915 5.915 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.280 1.280 16 C -0.043 4.043 17 H 0.104 0.896 18 C -0.108 4.108 19 C -0.149 4.149 20 C 0.054 3.946 21 O -0.391 6.391 22 C 0.076 3.924 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.371 0.629 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.015 0.985 30 H 0.266 0.734 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 -16.591 -0.007 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 N -0.062 5.062 4 N -0.391 5.391 5 C 0.205 3.795 6 H 0.014 0.986 7 C -0.193 4.193 8 C -0.584 4.584 9 H 0.077 0.923 10 C -0.182 4.182 11 N -0.554 5.554 12 Si 0.795 3.205 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.205 1.205 16 C -0.064 4.064 17 H 0.122 0.878 18 C -0.146 4.146 19 C -0.187 4.187 20 C -0.022 4.022 21 O -0.310 6.310 22 C -0.002 4.002 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.210 0.790 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.545 -16.043 0.001 16.052 hybrid contribution -1.217 1.289 -0.248 1.790 sum -1.762 -14.754 -0.247 14.861 Atomic orbital electron populations 1.21133 0.92155 1.03420 1.03150 1.24526 0.94704 0.92981 1.05307 1.73512 1.29478 0.93460 1.09719 1.48453 1.05598 1.00171 1.84855 1.18017 0.90984 0.78334 0.92184 0.98632 1.22002 0.98831 1.00532 0.97953 1.21555 1.04642 0.95269 1.36974 0.92341 1.25713 0.96141 1.00299 0.96048 1.70031 1.18845 1.20777 1.45720 0.85331 0.78630 0.78442 0.78114 1.19139 1.20144 1.20544 1.20462 0.94631 0.90910 1.00409 0.87815 1.21414 0.94165 0.97191 1.01833 1.22200 1.01128 0.96077 0.99277 1.22764 0.81162 1.01964 0.96318 1.87897 1.18372 1.30178 1.94559 1.22560 0.97259 0.85656 0.94727 0.90441 0.93225 0.88319 0.79010 0.91476 0.95308 0.96567 0.92457 0.92753 0.93439 0.90275 0.89813 0.86710 0.93521 0.94192 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.46 71.23 0.67 -2.92 16 2 C 0.02 0.61 6.45 46.53 0.30 0.91 16 3 N -0.25 -10.40 10.13 -41.20 -0.42 -10.82 16 4 N -0.65 -29.89 5.93 -172.51 -1.02 -30.92 16 5 C 0.31 16.58 3.23 44.24 0.14 16.72 16 6 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 7 C -0.13 -6.91 9.29 71.98 0.67 -6.24 16 8 C -0.55 -30.24 8.74 25.60 0.22 -30.02 16 9 H 0.06 3.16 7.79 -2.91 -0.02 3.14 16 10 C 0.02 0.99 5.30 84.65 0.45 1.44 16 11 N -0.92 -52.55 11.32 21.45 0.24 -52.31 16 12 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 14 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 C -0.04 -1.10 2.68 -11.44 -0.03 -1.13 16 17 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 18 C -0.11 -2.94 4.60 30.72 0.14 -2.80 16 19 C -0.15 -3.00 6.14 30.69 0.19 -2.81 16 20 C 0.05 1.05 6.84 72.01 0.49 1.54 16 21 O -0.39 -8.97 10.77 -148.98 -1.60 -10.58 16 22 C 0.08 1.73 5.97 72.01 0.43 2.16 16 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.05 1.44 6.31 -2.38 -0.02 1.43 16 25 H 0.10 1.89 6.97 -2.39 -0.02 1.87 16 26 H 0.37 15.85 6.31 -213.32 -1.35 14.50 16 27 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.05 1.52 7.91 -2.39 -0.02 1.50 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 2.12 7.11 -2.39 -0.02 2.10 16 Total: -1.00 -62.85 304.04 2.59 -60.26 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.31 Total: 22.45 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.68 Total: -23.14 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -1.20 Total: -94.04 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.60 Total: -10.58 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.85 2.59 -60.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779785968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.131 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds