Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28008 * 120.00160 * 2 1 4 4 N 1.40101 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.46499 * 120.00122 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46992 * 330.00501 * 5 4 3 7 7 C 1.53001 * 109.47047 * 90.00235 * 5 4 3 8 8 C 1.50696 * 109.47612 * 210.00311 * 5 4 3 9 9 H 1.08005 * 119.99843 * 354.36432 * 8 5 4 10 10 C 1.37877 * 120.00294 * 174.36456 * 8 5 4 11 11 N 1.31518 * 120.00032 * 156.86310 * 10 8 5 12 12 Si 1.86805 * 119.99735 * 336.86095 * 10 8 5 13 13 H 1.48498 * 109.46740 * 180.02562 * 12 10 8 14 14 H 1.48494 * 109.46907 * 300.00066 * 12 10 8 15 15 H 1.48497 * 109.46822 * 60.00149 * 12 10 8 16 16 C 1.50695 * 119.99954 * 180.02562 * 2 1 3 17 17 H 1.09009 * 109.52427 * 55.12071 * 16 2 1 18 18 C 1.53180 * 109.52442 * 175.31071 * 16 2 1 19 19 C 1.53180 * 109.03784 * 176.88474 * 18 16 2 20 20 C 1.53098 * 109.16206 * 303.02369 * 19 18 16 21 21 O 1.42900 * 109.41638 * 57.60869 * 20 19 18 22 22 C 1.42896 * 114.09860 * 298.84048 * 21 20 19 23 23 H 1.08997 * 109.47156 * 90.00293 * 1 2 3 24 24 H 1.09002 * 109.46685 * 210.00354 * 1 2 3 25 25 H 1.09000 * 109.46686 * 329.99922 * 1 2 3 26 26 H 0.97001 * 119.99800 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.47164 * 53.12352 * 7 5 4 28 28 H 1.08994 * 109.47265 * 173.12324 * 7 5 4 29 29 H 1.09002 * 109.47128 * 293.13075 * 7 5 4 30 30 H 0.96998 * 119.99567 * 354.93019 * 11 10 8 31 31 H 1.08994 * 109.54494 * 296.75364 * 18 16 2 32 32 H 1.09000 * 109.53992 * 57.02037 * 18 16 2 33 33 H 1.08999 * 109.52111 * 183.12014 * 19 18 16 34 34 H 1.09000 * 109.57400 * 62.95576 * 19 18 16 35 35 H 1.08997 * 109.47810 * 297.62312 * 20 19 18 36 36 H 1.09010 * 109.48582 * 177.59771 * 20 19 18 37 37 H 1.09002 * 109.48168 * 301.17716 * 22 21 20 38 38 H 1.09001 * 109.48709 * 181.14172 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1471 1.1086 0.0000 4 7 1.4466 2.3219 -0.0005 5 6 2.1791 3.5906 0.0000 6 1 3.1311 3.4602 0.5145 7 6 2.4351 4.0323 -1.4423 8 6 1.3642 4.6409 0.7098 9 1 0.3609 4.4146 1.0393 10 6 1.8995 5.8907 0.9387 11 7 1.1052 6.9224 1.1240 12 14 3.7530 6.1186 0.9857 13 1 4.0697 7.5457 1.2468 14 1 4.3277 5.2786 2.0670 15 1 4.3348 5.7125 -0.3188 16 6 2.2605 -1.3051 -0.0006 17 1 1.9339 -1.9139 -0.8437 18 6 3.7626 -1.0289 -0.1185 19 6 4.5224 -2.3567 -0.0396 20 6 4.1627 -3.0646 1.2693 21 8 2.7488 -3.2632 1.3289 22 6 1.9882 -2.0537 1.3068 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 0.4766 2.3218 -0.0005 27 1 1.4935 4.0447 -1.9911 28 1 2.8701 5.0317 -1.4445 29 1 3.1242 3.3350 -1.9189 30 1 0.1456 6.8192 1.0269 31 1 3.9707 -0.5459 -1.0731 32 1 4.0789 -0.3788 0.6973 33 1 5.5950 -2.1647 -0.0671 34 1 4.2435 -2.9877 -0.8835 35 1 4.4796 -2.4515 2.1130 36 1 4.6675 -4.0298 1.3114 37 1 2.2766 -1.4274 2.1511 38 1 0.9265 -2.2905 1.3757 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779785969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = -21.290441 kcal Electronic energy + Delta-G solvation = -17561.666540 eV Core-core repulsion = 14825.522059 eV Total energy + Delta-G solvation = -2736.144481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50453 -37.19769 -34.82706 -33.22930 -32.08639 -30.78573 -28.63009 -27.08724 -24.83123 -24.73688 -23.60363 -20.59309 -20.08081 -18.88931 -17.51044 -16.36416 -16.11724 -15.44547 -14.94316 -14.76907 -14.22945 -13.57811 -13.55000 -13.34531 -12.90235 -12.64971 -12.58527 -12.36447 -11.93847 -11.75761 -11.40429 -11.28635 -11.02588 -10.69657 -10.56177 -10.51370 -10.31052 -10.05478 -9.85489 -9.48301 -9.33083 -9.07177 -8.29445 -7.06569 -6.55623 -4.18855 2.82744 3.36917 3.41901 3.57603 3.71182 3.95398 4.43045 4.75470 4.85147 4.92432 5.07937 5.11885 5.17752 5.31185 5.42520 5.49772 5.59874 5.72723 5.74837 5.80734 5.89993 5.93858 6.01463 6.26659 6.35893 6.39798 6.47211 6.62407 6.71845 6.85844 7.15562 7.15879 7.41122 7.93668 8.09850 8.29358 8.82683 9.32309 9.47127 10.79039 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032905 B = 0.005459 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.724690 B = 5127.771522 C = 5498.964629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.005 4.005 3 N -0.209 5.209 4 N -0.632 5.632 5 C 0.279 3.721 6 H 0.030 0.970 7 C -0.157 4.157 8 C -0.621 4.621 9 H 0.059 0.941 10 C 0.044 3.956 11 N -0.892 5.892 12 Si 1.036 2.964 13 H -0.283 1.283 14 H -0.281 1.281 15 H -0.275 1.275 16 C -0.044 4.044 17 H 0.085 0.915 18 C -0.108 4.108 19 C -0.157 4.157 20 C 0.059 3.941 21 O -0.385 6.385 22 C 0.070 3.930 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.372 0.628 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.270 0.730 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -17.437 -2.185 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.199 4.199 3 N -0.020 5.020 4 N -0.370 5.370 5 C 0.175 3.825 6 H 0.048 0.952 7 C -0.217 4.217 8 C -0.659 4.659 9 H 0.077 0.923 10 C -0.163 4.163 11 N -0.525 5.525 12 Si 0.864 3.136 13 H -0.209 1.209 14 H -0.208 1.208 15 H -0.201 1.201 16 C -0.064 4.064 17 H 0.103 0.897 18 C -0.146 4.146 19 C -0.195 4.195 20 C -0.018 4.018 21 O -0.303 6.303 22 C -0.007 4.007 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.210 0.790 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.013 -15.890 -1.892 17.094 hybrid contribution -2.438 -0.936 -0.366 2.637 sum 3.575 -16.826 -2.258 17.349 Atomic orbital electron populations 1.21047 0.94026 1.02560 1.02071 1.23743 0.92986 0.92969 1.10219 1.73422 1.28889 0.93274 1.06402 1.48634 1.05931 0.99748 1.82677 1.18682 0.93054 0.78716 0.92042 0.95184 1.22541 0.99441 0.99925 0.99750 1.22051 1.02645 0.97772 1.43432 0.92284 1.25650 1.06497 0.91293 0.92884 1.70862 1.06137 1.30688 1.44776 0.84149 0.75607 0.76303 0.77577 1.20867 1.20761 1.20062 1.20318 0.95160 0.92042 0.98914 0.89732 1.21460 0.93327 0.96088 1.03680 1.22241 1.00780 0.97736 0.98707 1.22586 0.81894 1.00654 0.96666 1.87901 1.17435 1.30352 1.94634 1.22606 0.96093 0.85858 0.96177 0.91692 0.91501 0.91922 0.78961 0.94034 0.92535 0.95627 0.91994 0.91138 0.90923 0.90988 0.91320 0.93185 0.89238 0.92865 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.46 36.01 0.34 -1.56 16 2 C -0.01 -0.09 6.45 -78.91 -0.51 -0.60 16 3 N -0.21 -4.07 10.13 35.60 0.36 -3.71 16 4 N -0.63 -13.79 5.93 -5.88 -0.03 -13.83 16 5 C 0.28 6.83 2.83 -69.08 -0.20 6.64 16 6 H 0.03 0.77 6.72 -51.93 -0.35 0.42 16 7 C -0.16 -3.59 9.24 37.16 0.34 -3.25 16 8 C -0.62 -17.19 8.96 -34.44 -0.31 -17.50 16 9 H 0.06 1.75 8.01 -52.48 -0.42 1.33 16 10 C 0.04 1.25 5.19 -17.82 -0.09 1.15 16 11 N -0.89 -26.70 13.70 55.43 0.76 -25.94 16 12 Si 1.04 24.80 26.44 -169.99 -4.50 20.31 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.13 6.15 56.52 0.35 -5.78 16 16 C -0.04 -0.57 2.68 -91.63 -0.25 -0.81 16 17 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 18 C -0.11 -1.41 4.60 -26.55 -0.12 -1.53 16 19 C -0.16 -1.63 6.14 -26.59 -0.16 -1.79 16 20 C 0.06 0.61 6.84 37.21 0.25 0.86 16 21 O -0.38 -4.79 10.77 -35.23 -0.38 -5.17 16 22 C 0.07 0.86 5.97 37.21 0.22 1.08 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.75 6.97 -51.93 -0.36 0.39 16 25 H 0.06 0.96 6.31 -51.93 -0.33 0.63 16 26 H 0.37 7.82 6.30 -182.60 -1.15 6.67 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.31 5.48 -51.93 -0.28 1.03 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.02 7.11 -51.93 -0.37 0.65 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -29.71 300.61 -6.84 -36.55 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.11 Total: 4.56 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.47 Total: -17.30 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 1.08 Total: -43.47 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -4.50 Total: 20.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.71 -6.84 -36.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779785969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.260 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds