Wall clock time and date at job start Mon Mar 30 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28008 * 120.00160 * 2 1 4 4 N 1.40101 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.46499 * 120.00122 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46992 * 330.00501 * 5 4 3 7 7 C 1.53001 * 109.47047 * 90.00235 * 5 4 3 8 8 C 1.50696 * 109.47612 * 210.00311 * 5 4 3 9 9 H 1.08005 * 119.99843 * 354.36432 * 8 5 4 10 10 C 1.37877 * 120.00294 * 174.36456 * 8 5 4 11 11 N 1.31518 * 120.00032 * 156.86310 * 10 8 5 12 12 Si 1.86805 * 119.99735 * 336.86095 * 10 8 5 13 13 H 1.48498 * 109.46740 * 180.02562 * 12 10 8 14 14 H 1.48494 * 109.46907 * 300.00066 * 12 10 8 15 15 H 1.48497 * 109.46822 * 60.00149 * 12 10 8 16 16 C 1.50695 * 119.99954 * 180.02562 * 2 1 3 17 17 H 1.09009 * 109.52427 * 55.12071 * 16 2 1 18 18 C 1.53180 * 109.52442 * 175.31071 * 16 2 1 19 19 C 1.53180 * 109.03784 * 176.88474 * 18 16 2 20 20 C 1.53098 * 109.16206 * 303.02369 * 19 18 16 21 21 O 1.42900 * 109.41638 * 57.60869 * 20 19 18 22 22 C 1.42896 * 114.09860 * 298.84048 * 21 20 19 23 23 H 1.08997 * 109.47156 * 90.00293 * 1 2 3 24 24 H 1.09002 * 109.46685 * 210.00354 * 1 2 3 25 25 H 1.09000 * 109.46686 * 329.99922 * 1 2 3 26 26 H 0.97001 * 119.99800 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.47164 * 53.12352 * 7 5 4 28 28 H 1.08994 * 109.47265 * 173.12324 * 7 5 4 29 29 H 1.09002 * 109.47128 * 293.13075 * 7 5 4 30 30 H 0.96998 * 119.99567 * 354.93019 * 11 10 8 31 31 H 1.08994 * 109.54494 * 296.75364 * 18 16 2 32 32 H 1.09000 * 109.53992 * 57.02037 * 18 16 2 33 33 H 1.08999 * 109.52111 * 183.12014 * 19 18 16 34 34 H 1.09000 * 109.57400 * 62.95576 * 19 18 16 35 35 H 1.08997 * 109.47810 * 297.62312 * 20 19 18 36 36 H 1.09010 * 109.48582 * 177.59771 * 20 19 18 37 37 H 1.09002 * 109.48168 * 301.17716 * 22 21 20 38 38 H 1.09001 * 109.48709 * 181.14172 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1471 1.1086 0.0000 4 7 1.4466 2.3219 -0.0005 5 6 2.1791 3.5906 0.0000 6 1 3.1311 3.4602 0.5145 7 6 2.4351 4.0323 -1.4423 8 6 1.3642 4.6409 0.7098 9 1 0.3609 4.4146 1.0393 10 6 1.8995 5.8907 0.9387 11 7 1.1052 6.9224 1.1240 12 14 3.7530 6.1186 0.9857 13 1 4.0697 7.5457 1.2468 14 1 4.3277 5.2786 2.0670 15 1 4.3348 5.7125 -0.3188 16 6 2.2605 -1.3051 -0.0006 17 1 1.9339 -1.9139 -0.8437 18 6 3.7626 -1.0289 -0.1185 19 6 4.5224 -2.3567 -0.0396 20 6 4.1627 -3.0646 1.2693 21 8 2.7488 -3.2632 1.3289 22 6 1.9882 -2.0537 1.3068 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 0.4766 2.3218 -0.0005 27 1 1.4935 4.0447 -1.9911 28 1 2.8701 5.0317 -1.4445 29 1 3.1242 3.3350 -1.9189 30 1 0.1456 6.8192 1.0269 31 1 3.9707 -0.5459 -1.0731 32 1 4.0789 -0.3788 0.6973 33 1 5.5950 -2.1647 -0.0671 34 1 4.2435 -2.9877 -0.8835 35 1 4.4796 -2.4515 2.1130 36 1 4.6675 -4.0298 1.3114 37 1 2.2766 -1.4274 2.1511 38 1 0.9265 -2.2905 1.3757 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779785969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:41 Heat of formation + Delta-G solvation = -41.165784 kcal Electronic energy + Delta-G solvation = -17562.528400 eV Core-core repulsion = 14825.522059 eV Total energy + Delta-G solvation = -2737.006340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51637 -38.58256 -36.51897 -34.61006 -33.62282 -32.17795 -29.86685 -28.58942 -26.79204 -25.77164 -24.70616 -22.11546 -21.39637 -20.44223 -19.39510 -17.53295 -17.06369 -16.65446 -16.54281 -15.78298 -15.58762 -15.20356 -14.83207 -14.70691 -14.27723 -14.18799 -14.10429 -13.58530 -13.52584 -13.17649 -12.92378 -12.45164 -12.32347 -12.13733 -12.03231 -11.85501 -11.71542 -11.65763 -11.24149 -11.16026 -10.68483 -10.46755 -10.43951 -8.93300 -8.53289 -6.43433 1.45886 1.49210 1.51347 1.71600 2.24970 2.44332 2.94780 2.97692 3.69253 3.85611 3.99668 4.08132 4.23475 4.28385 4.38503 4.44628 4.52470 4.63699 4.65624 4.73605 4.79556 4.83309 4.84994 4.95245 5.00421 5.06239 5.12581 5.24212 5.30308 5.44460 5.47466 5.62497 5.94648 6.05033 6.24119 6.27152 6.72312 7.31138 7.81627 8.53731 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032905 B = 0.005459 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.724690 B = 5127.771522 C = 5498.964629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.026 3.974 3 N -0.249 5.249 4 N -0.652 5.652 5 C 0.285 3.715 6 H 0.022 0.978 7 C -0.148 4.148 8 C -0.623 4.623 9 H 0.025 0.975 10 C -0.001 4.001 11 N -0.922 5.922 12 Si 1.075 2.925 13 H -0.282 1.282 14 H -0.271 1.271 15 H -0.247 1.247 16 C -0.044 4.044 17 H 0.105 0.895 18 C -0.108 4.108 19 C -0.149 4.149 20 C 0.053 3.947 21 O -0.392 6.392 22 C 0.075 3.925 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.370 0.630 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.257 0.743 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.114 0.886 37 H 0.040 0.960 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -20.005 -2.842 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 N -0.057 5.057 4 N -0.390 5.390 5 C 0.180 3.820 6 H 0.040 0.960 7 C -0.208 4.208 8 C -0.661 4.661 9 H 0.043 0.957 10 C -0.203 4.203 11 N -0.556 5.556 12 Si 0.896 3.104 13 H -0.208 1.208 14 H -0.196 1.196 15 H -0.171 1.171 16 C -0.065 4.065 17 H 0.123 0.877 18 C -0.146 4.146 19 C -0.187 4.187 20 C -0.023 4.023 21 O -0.311 6.311 22 C -0.003 4.003 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.063 0.937 26 H 0.208 0.792 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.059 0.941 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.261 -18.486 -2.557 20.025 hybrid contribution -2.925 -0.362 -0.138 2.950 sum 4.336 -18.848 -2.694 19.527 Atomic orbital electron populations 1.21142 0.92490 1.03242 1.03166 1.24535 0.94524 0.93108 1.04728 1.73490 1.28982 0.93179 1.10071 1.48283 1.05538 1.00101 1.85039 1.18367 0.92035 0.79316 0.92299 0.95998 1.22400 0.99690 0.99931 0.98731 1.22222 1.01516 0.99070 1.43306 0.95672 1.26972 1.10113 0.91152 0.92017 1.70974 1.05563 1.31741 1.47322 0.83662 0.70915 0.76501 0.79337 1.20768 1.19591 1.17072 1.20478 0.94939 0.90669 1.00386 0.87739 1.21430 0.93746 0.97276 1.02177 1.22196 1.01249 0.96109 0.99107 1.22784 0.81061 1.02006 0.96494 1.87902 1.18472 1.30130 1.94579 1.22555 0.97185 0.85732 0.94825 0.90321 0.88312 0.93698 0.79188 0.94361 0.93103 0.93781 0.93417 0.92245 0.93074 0.89599 0.90356 0.93434 0.86824 0.94137 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.46 71.24 0.67 -2.92 16 2 C 0.03 0.77 6.45 46.53 0.30 1.07 16 3 N -0.25 -9.52 10.13 -41.20 -0.42 -9.93 16 4 N -0.65 -28.66 5.93 -172.53 -1.02 -29.68 16 5 C 0.29 14.02 2.83 44.24 0.13 14.14 16 6 H 0.02 1.12 6.72 -2.39 -0.02 1.10 16 7 C -0.15 -6.66 9.24 71.98 0.67 -5.99 16 8 C -0.62 -35.44 8.96 25.60 0.23 -35.21 16 9 H 0.02 1.56 8.01 -2.91 -0.02 1.53 16 10 C 0.00 -0.08 5.19 84.65 0.44 0.36 16 11 N -0.92 -56.68 13.70 21.45 0.29 -56.38 16 12 Si 1.08 49.74 26.44 68.60 1.81 51.55 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.25 -10.25 6.15 99.48 0.61 -9.63 16 16 C -0.04 -1.04 2.68 -11.45 -0.03 -1.07 16 17 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 18 C -0.11 -2.64 4.60 30.71 0.14 -2.50 16 19 C -0.15 -2.67 6.14 30.69 0.19 -2.48 16 20 C 0.05 0.94 6.84 72.01 0.49 1.43 16 21 O -0.39 -8.57 10.77 -148.98 -1.60 -10.17 16 22 C 0.07 1.63 5.97 72.01 0.43 2.06 16 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.10 1.89 6.97 -2.39 -0.02 1.87 16 25 H 0.04 1.34 6.31 -2.39 -0.02 1.32 16 26 H 0.37 15.91 6.30 -213.32 -1.34 14.57 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 2.30 5.48 -2.39 -0.01 2.28 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.26 15.95 8.73 -92.71 -0.81 15.14 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.46 7.91 -2.39 -0.02 1.44 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 2.01 7.11 -2.39 -0.02 1.99 16 Total: -1.00 -65.06 300.61 2.28 -62.78 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.44 Total: 22.94 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.65 Total: -31.11 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -1.15 Total: -95.99 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.60 Total: -10.17 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.81 Total: 51.55 kcal Total: -65.06 2.28 -62.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779785969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.619 kcal (2) G-P(sol) polarization free energy of solvation -65.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds