Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99914 * 2 1 4 4 C 1.52956 * 109.41192 * 150.00076 * 3 2 1 5 5 C 1.53239 * 109.40035 * 183.70458 * 4 3 2 6 6 C 1.51265 * 108.69614 * 305.27392 * 5 4 3 7 7 N 1.28004 * 120.85424 * 231.41936 * 6 5 4 8 8 N 1.40101 * 120.00542 * 175.12072 * 7 6 5 9 9 C 1.46499 * 120.00158 * 185.26731 * 8 7 6 10 10 H 1.09000 * 109.46967 * 330.00044 * 9 8 7 11 11 C 1.52997 * 109.47002 * 90.00175 * 9 8 7 12 12 C 1.50703 * 109.46918 * 209.99991 * 9 8 7 13 13 H 1.08005 * 120.00015 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99871 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00286 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 120.00079 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.47147 * 90.00232 * 16 14 12 18 18 H 1.48505 * 109.47185 * 210.00035 * 16 14 12 19 19 H 1.48502 * 109.47313 * 330.00211 * 16 14 12 20 20 C 1.51673 * 118.04940 * 51.26951 * 6 5 4 21 21 C 1.52964 * 109.41313 * 270.35805 * 3 2 1 22 22 H 1.09002 * 109.46886 * 300.00007 * 1 2 3 23 23 H 1.08996 * 109.47021 * 60.00100 * 1 2 3 24 24 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.35360 * 30.17824 * 3 2 1 26 26 H 1.08998 * 109.48184 * 63.72716 * 4 3 2 27 27 H 1.08992 * 109.49305 * 303.68640 * 4 3 2 28 28 H 1.08996 * 109.62378 * 65.09056 * 5 4 3 29 29 H 1.08998 * 109.62256 * 185.46881 * 5 4 3 30 30 H 0.97007 * 119.99683 * 5.26872 * 8 7 6 31 31 H 1.09000 * 109.47481 * 299.99989 * 11 9 8 32 32 H 1.09009 * 109.47193 * 60.00102 * 11 9 8 33 33 H 1.09000 * 109.47342 * 179.97438 * 11 9 8 34 34 H 0.96996 * 120.00449 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.55980 * 189.01879 * 20 6 5 36 36 H 1.09004 * 109.74980 * 68.60399 * 20 6 5 37 37 H 1.08999 * 109.47468 * 296.27296 * 21 3 2 38 38 H 1.08998 * 109.48686 * 56.31204 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3584 1.2618 0.7213 5 6 3.9384 2.6779 0.8025 6 6 4.0013 3.2569 -0.5935 7 7 5.0846 3.7691 -1.0435 8 7 5.1532 4.2074 -2.3725 9 6 6.4243 4.6865 -2.9211 10 1 7.0205 5.1293 -2.1233 11 6 7.1883 3.5130 -3.5376 12 6 6.1548 5.7230 -3.9814 13 1 5.1384 5.9976 -4.2222 14 6 7.2058 6.3205 -4.6441 15 7 6.9708 7.2254 -5.5691 16 14 8.9638 5.8460 -4.2272 17 1 9.3886 4.7139 -5.0893 18 1 9.8586 7.0081 -4.4597 19 1 9.0417 5.4387 -2.8013 20 6 2.7456 3.2088 -1.4429 21 6 2.2088 1.7736 -1.4426 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.3450 1.9971 0.5170 26 1 4.0448 0.6189 0.1703 27 1 3.2197 0.8675 1.7279 28 1 3.2988 3.3000 1.4285 29 1 4.9410 2.6389 1.2282 30 1 4.3590 4.1936 -2.9293 31 1 7.3832 2.7633 -2.7707 32 1 6.5920 3.0701 -4.3354 33 1 8.1338 3.8695 -3.9462 34 1 7.7102 7.6461 -6.0351 35 1 2.9832 3.5107 -2.4629 36 1 1.9943 3.8807 -1.0278 37 1 2.9224 1.1185 -1.9423 38 1 1.2553 1.7421 -1.9697 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783856945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -11.607119 kcal Electronic energy + Delta-G solvation = -17393.059500 eV Core-core repulsion = 14657.334919 eV Total energy + Delta-G solvation = -2735.724581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.25445 -37.29158 -35.34420 -33.37106 -31.50054 -31.07226 -28.67536 -26.95003 -25.51555 -24.93986 -22.93648 -21.21037 -20.29345 -18.76237 -17.17644 -16.68221 -16.00047 -15.34063 -15.23854 -14.87603 -14.24751 -13.95017 -13.44706 -13.10338 -12.95013 -12.82584 -12.38177 -12.22188 -12.12167 -11.93437 -11.52611 -11.32123 -11.13241 -10.89215 -10.75093 -10.63835 -10.37687 -10.10525 -9.69702 -9.58976 -9.26401 -9.03438 -8.67198 -6.99291 -6.17627 -4.19174 2.83308 3.24260 3.35138 3.37841 3.65210 3.80539 4.32968 4.70078 4.77000 5.01415 5.11202 5.16160 5.16950 5.19842 5.28899 5.42538 5.44816 5.57370 5.63806 5.65795 5.80611 5.98962 6.10168 6.14274 6.28957 6.34824 6.36210 6.57344 6.64666 6.80011 7.05551 7.11530 7.41879 7.58939 8.08965 8.47410 8.83231 9.32727 9.44588 10.95084 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048289 B = 0.004695 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.697791 B = 5961.879183 C = 6168.360180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.090 3.910 4 C -0.108 4.108 5 C -0.042 4.042 6 C 0.000 4.000 7 N -0.212 5.212 8 N -0.633 5.633 9 C 0.273 3.727 10 H 0.039 0.961 11 C -0.163 4.163 12 C -0.531 4.531 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.264 1.264 20 C -0.103 4.103 21 C -0.129 4.129 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.373 0.627 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 -11.980 11.542 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.033 3.967 4 C -0.147 4.147 5 C -0.081 4.081 6 C -0.194 4.194 7 N -0.021 5.021 8 N -0.372 5.372 9 C 0.168 3.832 10 H 0.057 0.943 11 C -0.222 4.222 12 C -0.570 4.570 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.222 1.222 19 H -0.189 1.189 20 C -0.143 4.143 21 C -0.168 4.168 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.213 0.787 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.100 -11.681 11.576 18.795 hybrid contribution -0.390 -0.004 -0.691 0.794 sum -9.490 -11.684 10.885 18.576 Atomic orbital electron populations 1.22759 0.81514 1.02419 0.99874 1.87909 1.19290 1.28368 1.95101 1.22172 0.94991 0.83912 0.95639 1.21573 0.95228 0.97253 1.00628 1.20209 1.02030 0.94075 0.91812 1.24287 0.91985 1.05038 0.98094 1.73401 1.23804 1.04700 1.00180 1.48484 1.12218 1.72322 1.04190 1.18775 0.80712 0.90595 0.93084 0.94305 1.22580 0.99841 0.99753 1.00030 1.21097 0.95609 1.20981 1.19314 0.90547 1.24834 0.99102 0.94432 0.94306 1.69873 1.32307 1.26765 1.24319 0.86817 0.84480 0.77007 0.79712 1.20375 1.22243 1.18856 1.21007 0.96445 0.96547 1.00290 1.21943 1.01327 0.96550 0.97006 0.94187 0.94125 0.89930 0.92109 0.90921 0.90952 0.90939 0.90026 0.78708 0.94846 0.93084 0.93718 0.92341 0.91024 0.90861 0.91054 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.39 -4.48 10.34 -35.23 -0.36 -4.85 16 3 C 0.09 1.00 2.51 -26.77 -0.07 0.93 16 4 C -0.11 -1.20 5.59 -26.63 -0.15 -1.35 16 5 C -0.04 -0.51 6.15 -27.48 -0.17 -0.68 16 6 C 0.00 0.01 6.55 -78.16 -0.51 -0.51 16 7 N -0.21 -4.19 11.43 35.97 0.41 -3.78 16 8 N -0.63 -13.82 5.99 -5.88 -0.04 -13.86 16 9 C 0.27 6.70 2.82 -69.08 -0.20 6.51 16 10 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 11 C -0.16 -3.72 9.00 37.16 0.33 -3.38 16 12 C -0.53 -14.88 9.32 -34.44 -0.32 -15.20 16 13 H 0.08 2.30 8.03 -52.48 -0.42 1.88 16 14 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 15 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 16 Si 0.89 21.86 24.37 -169.99 -4.14 17.71 16 17 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 20 C -0.10 -1.42 5.93 -27.29 -0.16 -1.58 16 21 C -0.13 -1.57 5.55 -26.63 -0.15 -1.72 16 22 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 23 H 0.04 0.32 7.77 -51.93 -0.40 -0.09 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.60 7.78 -51.93 -0.40 0.19 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.37 7.78 6.10 -182.59 -1.11 6.67 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 33 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 1.10 5.60 -51.93 -0.29 0.81 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.68 7.77 -51.93 -0.40 0.28 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -30.65 299.44 -6.22 -36.88 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.99 Total: 3.15 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -0.39 Total: -13.54 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 1.15 Total: -43.87 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.36 Total: -4.85 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.65 -6.22 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783856945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.269 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds