Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99914 * 2 1 4 4 C 1.52956 * 109.41192 * 150.00076 * 3 2 1 5 5 C 1.53239 * 109.40035 * 183.70458 * 4 3 2 6 6 C 1.51265 * 108.69614 * 305.27392 * 5 4 3 7 7 N 1.28004 * 120.85424 * 231.41936 * 6 5 4 8 8 N 1.40101 * 120.00542 * 175.12072 * 7 6 5 9 9 C 1.46499 * 120.00158 * 185.26731 * 8 7 6 10 10 H 1.09000 * 109.46967 * 330.00044 * 9 8 7 11 11 C 1.52997 * 109.47002 * 90.00175 * 9 8 7 12 12 C 1.50703 * 109.46918 * 209.99991 * 9 8 7 13 13 H 1.08005 * 120.00015 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99871 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00286 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 120.00079 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.47147 * 90.00232 * 16 14 12 18 18 H 1.48505 * 109.47185 * 210.00035 * 16 14 12 19 19 H 1.48502 * 109.47313 * 330.00211 * 16 14 12 20 20 C 1.51673 * 118.04940 * 51.26951 * 6 5 4 21 21 C 1.52964 * 109.41313 * 270.35805 * 3 2 1 22 22 H 1.09002 * 109.46886 * 300.00007 * 1 2 3 23 23 H 1.08996 * 109.47021 * 60.00100 * 1 2 3 24 24 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.35360 * 30.17824 * 3 2 1 26 26 H 1.08998 * 109.48184 * 63.72716 * 4 3 2 27 27 H 1.08992 * 109.49305 * 303.68640 * 4 3 2 28 28 H 1.08996 * 109.62378 * 65.09056 * 5 4 3 29 29 H 1.08998 * 109.62256 * 185.46881 * 5 4 3 30 30 H 0.97007 * 119.99683 * 5.26872 * 8 7 6 31 31 H 1.09000 * 109.47481 * 299.99989 * 11 9 8 32 32 H 1.09009 * 109.47193 * 60.00102 * 11 9 8 33 33 H 1.09000 * 109.47342 * 179.97438 * 11 9 8 34 34 H 0.96996 * 120.00449 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.55980 * 189.01879 * 20 6 5 36 36 H 1.09004 * 109.74980 * 68.60399 * 20 6 5 37 37 H 1.08999 * 109.47468 * 296.27296 * 21 3 2 38 38 H 1.08998 * 109.48686 * 56.31204 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3584 1.2618 0.7213 5 6 3.9384 2.6779 0.8025 6 6 4.0013 3.2569 -0.5935 7 7 5.0846 3.7691 -1.0435 8 7 5.1532 4.2074 -2.3725 9 6 6.4243 4.6865 -2.9211 10 1 7.0205 5.1293 -2.1233 11 6 7.1883 3.5130 -3.5376 12 6 6.1548 5.7230 -3.9814 13 1 5.1384 5.9976 -4.2222 14 6 7.2058 6.3205 -4.6441 15 7 6.9708 7.2254 -5.5691 16 14 8.9638 5.8460 -4.2272 17 1 9.3886 4.7139 -5.0893 18 1 9.8586 7.0081 -4.4597 19 1 9.0417 5.4387 -2.8013 20 6 2.7456 3.2088 -1.4429 21 6 2.2088 1.7736 -1.4426 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.3450 1.9971 0.5170 26 1 4.0448 0.6189 0.1703 27 1 3.2197 0.8675 1.7279 28 1 3.2988 3.3000 1.4285 29 1 4.9410 2.6389 1.2282 30 1 4.3590 4.1936 -2.9293 31 1 7.3832 2.7633 -2.7707 32 1 6.5920 3.0701 -4.3354 33 1 8.1338 3.8695 -3.9462 34 1 7.7102 7.6461 -6.0351 35 1 2.9832 3.5107 -2.4629 36 1 1.9943 3.8807 -1.0278 37 1 2.9224 1.1185 -1.9423 38 1 1.2553 1.7421 -1.9697 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783856945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -33.010158 kcal Electronic energy + Delta-G solvation = -17393.987605 eV Core-core repulsion = 14657.334919 eV Total energy + Delta-G solvation = -2736.652686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.25923 -38.49902 -36.86440 -34.97258 -33.38947 -32.11386 -30.04038 -27.97722 -27.16661 -26.38323 -24.00827 -22.46534 -21.84709 -20.15317 -18.79426 -17.88823 -17.30471 -17.11637 -16.05951 -15.91626 -15.63817 -15.16216 -14.98277 -14.80026 -14.13230 -14.07960 -13.96010 -13.59001 -13.38247 -13.20217 -13.01733 -12.68969 -12.32658 -12.14796 -12.12381 -11.91670 -11.78030 -11.51828 -11.41922 -11.24820 -10.82196 -10.68250 -10.28049 -8.59026 -8.37467 -6.44261 1.29708 1.35996 1.46834 1.52205 2.26161 2.28166 2.87696 2.98246 3.72131 3.76385 3.97857 4.17221 4.24215 4.42199 4.42841 4.49159 4.52870 4.56923 4.63639 4.67245 4.71165 4.75779 4.84436 4.93014 4.96712 5.05196 5.12462 5.17749 5.32361 5.37171 5.42458 5.51858 5.81002 6.12071 6.34766 6.52331 6.65848 7.23133 7.84464 8.78632 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048289 B = 0.004695 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.697791 B = 5961.879183 C = 6168.360180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.092 3.908 4 C -0.103 4.103 5 C -0.042 4.042 6 C 0.031 3.969 7 N -0.260 5.260 8 N -0.653 5.653 9 C 0.281 3.719 10 H 0.024 0.976 11 C -0.155 4.155 12 C -0.536 4.536 13 H 0.038 0.962 14 C 0.023 3.977 15 N -0.941 5.941 16 Si 0.951 3.049 17 H -0.261 1.261 18 H -0.292 1.292 19 H -0.252 1.252 20 C -0.106 4.106 21 C -0.123 4.123 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.372 0.628 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.270 0.730 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.961 -13.619 13.641 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.035 3.965 4 C -0.142 4.142 5 C -0.081 4.081 6 C -0.164 4.164 7 N -0.066 5.066 8 N -0.391 5.391 9 C 0.175 3.825 10 H 0.042 0.958 11 C -0.214 4.214 12 C -0.575 4.575 13 H 0.057 0.943 14 C -0.176 4.176 15 N -0.580 5.580 16 Si 0.778 3.222 17 H -0.187 1.187 18 H -0.219 1.219 19 H -0.176 1.176 20 C -0.146 4.146 21 C -0.162 4.162 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.211 0.789 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.647 -13.340 13.690 21.411 hybrid contribution -0.485 0.452 -1.240 1.406 sum -10.132 -12.888 12.450 20.586 Atomic orbital electron populations 1.22970 0.79877 1.03628 1.00801 1.87887 1.21150 1.28430 1.95141 1.22150 0.95416 0.84438 0.94530 1.21528 0.94874 0.95927 1.01830 1.20403 1.03018 0.95092 0.89592 1.25224 0.91480 1.00327 0.99379 1.73466 1.25868 1.08223 0.99068 1.48143 1.11124 1.74266 1.05601 1.18417 0.82127 0.90377 0.91531 0.95820 1.22451 0.99271 0.99334 1.00338 1.21339 0.94029 1.21994 1.20183 0.94324 1.25688 1.03639 0.94234 0.94033 1.70006 1.33852 1.28304 1.25818 0.85818 0.78926 0.77204 0.80288 1.18672 1.21922 1.17618 1.21089 0.96170 0.98355 0.98990 1.21886 1.01301 0.94644 0.98398 0.92659 0.93743 0.88754 0.89997 0.92560 0.88584 0.88018 0.90018 0.78874 0.93096 0.93151 0.93940 0.92049 0.93062 0.88656 0.93034 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.81 113.37 1.23 1.54 16 2 O -0.41 -8.23 10.34 -148.98 -1.54 -9.77 16 3 C 0.09 1.74 2.51 30.57 0.08 1.82 16 4 C -0.10 -1.96 5.59 30.66 0.17 -1.79 16 5 C -0.04 -0.89 6.15 30.11 0.19 -0.70 16 6 C 0.03 0.93 6.55 47.02 0.31 1.24 16 7 N -0.26 -10.16 11.43 -40.03 -0.46 -10.62 16 8 N -0.65 -29.06 5.99 -172.52 -1.03 -30.09 16 9 C 0.28 14.00 2.82 44.25 0.12 14.13 16 10 H 0.02 1.25 7.20 -2.39 -0.02 1.23 16 11 C -0.16 -6.96 9.00 71.98 0.65 -6.31 16 12 C -0.54 -31.10 9.32 25.60 0.24 -30.86 16 13 H 0.04 2.46 8.03 -2.91 -0.02 2.43 16 14 C 0.02 1.34 5.45 84.65 0.46 1.80 16 15 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 16 Si 0.95 45.05 24.37 68.60 1.67 46.72 16 17 H -0.26 -11.64 6.87 99.48 0.68 -10.95 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.25 -11.39 6.53 99.48 0.65 -10.74 16 20 C -0.11 -2.78 5.93 30.23 0.18 -2.60 16 21 C -0.12 -2.77 5.55 30.66 0.17 -2.60 16 22 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 23 H 0.04 0.56 7.77 -2.39 -0.02 0.54 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.23 7.78 -2.38 -0.02 1.22 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 30 H 0.37 16.13 6.10 -213.31 -1.30 14.82 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.04 1.89 3.27 -2.39 -0.01 1.89 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.05 1.58 5.60 -2.39 -0.01 1.57 16 36 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.50 7.77 -2.39 -0.02 1.49 16 Total: -1.00 -67.66 299.44 2.38 -65.27 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.34 Total: 20.82 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 3.79 Total: -24.33 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -1.19 Total: -98.72 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.54 Total: -9.77 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.72 kcal Total: -67.66 2.38 -65.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783856945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.264 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds