Wall clock time and date at job start Mon Mar 30 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00009 * 2 1 4 4 H 1.09005 * 109.48011 * 29.99943 * 3 2 1 5 5 C 1.52959 * 109.48435 * 150.02720 * 3 2 1 6 6 C 1.52959 * 109.81932 * 183.59253 * 5 3 2 7 7 C 1.53223 * 109.40426 * 296.40386 * 6 5 3 8 8 C 1.51272 * 108.53920 * 54.62651 * 7 6 5 9 9 N 1.28007 * 120.84937 * 128.63217 * 8 7 6 10 10 N 1.40099 * 120.00414 * 355.10681 * 9 8 7 11 11 C 1.46496 * 120.00178 * 185.26790 * 10 9 8 12 12 H 1.08995 * 109.47082 * 30.00481 * 11 10 9 13 13 C 1.52997 * 109.47271 * 270.00273 * 11 10 9 14 14 C 1.50698 * 109.46977 * 150.00220 * 11 10 9 15 15 H 1.08001 * 120.00319 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00000 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99909 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99793 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47026 * 90.00387 * 18 16 14 20 20 H 1.48502 * 109.46796 * 209.99708 * 18 16 14 21 21 H 1.48493 * 109.47299 * 329.99885 * 18 16 14 22 22 C 1.51265 * 118.29862 * 308.65271 * 8 7 6 23 23 H 1.09000 * 109.47298 * 60.00193 * 1 2 3 24 24 H 1.09005 * 109.47233 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47066 * 299.99829 * 1 2 3 26 26 H 1.09005 * 109.41145 * 303.69856 * 5 3 2 27 27 H 1.08997 * 109.41177 * 63.55463 * 5 3 2 28 28 H 1.09001 * 109.48300 * 56.38066 * 6 5 3 29 29 H 1.08998 * 109.48131 * 176.40635 * 6 5 3 30 30 H 1.09001 * 109.62484 * 174.34080 * 7 6 5 31 31 H 1.09006 * 109.62477 * 294.72089 * 7 6 5 32 32 H 0.96999 * 119.99633 * 5.26945 * 10 9 8 33 33 H 1.08990 * 109.47435 * 59.99738 * 13 11 10 34 34 H 1.09000 * 109.47518 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.46910 * 300.00016 * 13 11 10 36 36 H 0.96996 * 119.99578 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.62859 * 291.63339 * 22 8 7 38 38 H 1.08999 * 109.62550 * 171.06003 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9995 0.5138 5 6 3.3589 1.2635 0.7204 6 6 3.9466 2.6732 0.8035 7 6 4.2282 3.1914 -0.6107 8 6 2.9546 3.0938 -1.4212 9 7 2.5107 4.1038 -2.0704 10 7 3.1478 5.3461 -1.9547 11 6 2.5740 6.5270 -2.6047 12 1 1.4901 6.4233 -2.6551 13 6 3.1403 6.6559 -4.0201 14 6 2.9244 7.7581 -1.8094 15 1 3.5150 7.6698 -0.9096 16 6 2.4900 8.9973 -2.2300 17 7 1.7703 9.1049 -3.3255 18 14 2.9238 10.5233 -1.2437 19 1 4.2086 11.0821 -1.7359 20 1 1.8501 11.5369 -1.4024 21 1 3.0573 10.1641 0.1909 22 6 2.2189 1.7723 -1.4444 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.2198 0.8690 1.7270 27 1 4.0437 0.6184 0.1700 28 1 3.2356 3.3349 1.2982 29 1 4.8756 2.6467 1.3729 30 1 4.5522 4.2310 -0.5619 31 1 5.0076 2.5863 -1.0740 32 1 3.9689 5.4244 -1.4443 33 1 2.8870 5.7654 -4.5953 34 1 2.7138 7.5347 -4.5036 35 1 4.2242 6.7596 -3.9697 36 1 1.4644 9.9766 -3.6211 37 1 2.8099 1.0338 -1.9861 38 1 1.2521 1.9001 -1.9312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794522681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:35 Heat of formation + Delta-G solvation = -19.981700 kcal Electronic energy + Delta-G solvation = -17399.301662 eV Core-core repulsion = 14663.213932 eV Total energy + Delta-G solvation = -2736.087730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14510 -37.13956 -35.22308 -33.53567 -31.32824 -30.23533 -28.35423 -26.42581 -25.99146 -25.11820 -22.47807 -21.14728 -20.25710 -18.59564 -17.16410 -16.19629 -15.78130 -15.21563 -15.01638 -14.85322 -14.41043 -13.68526 -13.42459 -13.15641 -12.77306 -12.48709 -12.39411 -11.97803 -11.80341 -11.34594 -11.27591 -11.02354 -10.91395 -10.77855 -10.68356 -10.51597 -10.29020 -10.20688 -10.05340 -9.58676 -9.17663 -8.89378 -8.49325 -6.81437 -6.11562 -4.19453 2.93644 3.24541 3.31094 3.33854 3.68812 3.99843 4.39010 4.87713 4.94631 5.10446 5.17818 5.20677 5.24472 5.34777 5.37001 5.41674 5.60003 5.66722 5.76590 5.84292 5.97706 6.04387 6.07762 6.25825 6.34533 6.57571 6.81055 7.04508 7.11683 7.20465 7.21467 7.61581 7.83800 7.91564 8.21894 8.38803 8.90057 9.46668 9.50142 10.94373 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033750 B = 0.004875 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.429245 B = 5741.653066 C = 5917.249667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.095 3.905 4 H 0.063 0.937 5 C -0.112 4.112 6 C -0.107 4.107 7 C -0.106 4.106 8 C -0.006 4.006 9 N -0.208 5.208 10 N -0.638 5.638 11 C 0.299 3.701 12 H 0.038 0.962 13 C -0.150 4.150 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.902 3.098 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.062 4.062 23 H 0.044 0.956 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.367 0.633 33 H 0.011 0.989 34 H 0.088 0.912 35 H 0.024 0.976 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -14.223 6.678 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.036 3.964 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.200 4.200 9 N -0.018 5.018 10 N -0.377 5.377 11 C 0.197 3.803 12 H 0.056 0.944 13 C -0.209 4.209 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.102 4.102 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.206 0.794 33 H 0.030 0.970 34 H 0.107 0.893 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.496 -13.765 5.808 14.948 hybrid contribution 1.026 1.077 1.043 1.817 sum 1.521 -12.688 6.851 14.499 Atomic orbital electron populations 1.22778 0.81292 1.02334 1.00239 1.87866 1.19515 1.28162 1.95095 1.22150 0.94967 0.83871 0.95414 0.91916 1.21528 0.95480 0.97514 1.00423 1.21428 1.00818 0.95690 0.96637 1.21000 0.96656 1.01543 0.95389 1.23973 0.98371 0.95205 1.02437 1.73407 1.21556 0.93136 1.13669 1.48956 1.27690 1.02087 1.58958 1.18442 0.94038 0.78966 0.88888 0.94387 1.22204 0.98985 1.00364 0.99384 1.21239 1.34671 0.91048 1.09751 0.92358 1.24860 0.94775 0.98877 0.95149 1.69897 1.35704 1.24471 1.22365 0.86446 0.78095 0.82283 0.80270 1.20554 1.21034 1.19912 1.20660 1.00251 0.92515 0.96762 0.93776 0.89936 0.94166 0.91527 0.91091 0.91741 0.91438 0.91310 0.90970 0.79413 0.96976 0.89346 0.95702 0.92631 0.90438 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.39 -4.84 10.35 -35.23 -0.36 -5.20 16 3 C 0.09 1.20 2.62 -26.63 -0.07 1.13 16 4 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 5 C -0.11 -1.27 5.46 -26.77 -0.15 -1.41 16 6 C -0.11 -1.29 5.94 -26.64 -0.16 -1.44 16 7 C -0.11 -1.52 5.92 -27.49 -0.16 -1.68 16 8 C -0.01 -0.10 6.52 -78.36 -0.51 -0.61 16 9 N -0.21 -4.37 11.43 35.87 0.41 -3.96 16 10 N -0.64 -14.50 5.99 -5.89 -0.04 -14.53 16 11 C 0.30 7.81 3.23 -69.09 -0.22 7.59 16 12 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.15 -3.80 9.29 37.16 0.35 -3.45 16 14 C -0.53 -14.39 8.74 -34.44 -0.30 -14.69 16 15 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.89 -24.99 11.32 55.43 0.63 -24.37 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 C -0.06 -0.88 5.78 -27.49 -0.16 -1.04 16 23 H 0.04 0.43 8.03 -51.93 -0.42 0.02 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.08 5.57 -51.93 -0.29 0.79 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.37 7.80 6.07 -182.60 -1.11 6.70 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -29.01 306.72 -7.29 -36.30 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.14 Total: 3.75 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.39 Total: -12.52 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 1.00 Total: -42.85 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.36 Total: -5.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.01 -7.29 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794522681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.317 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds