Wall clock time and date at job start Mon Mar 30 2020 03:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00009 * 2 1 4 4 H 1.09005 * 109.48011 * 29.99943 * 3 2 1 5 5 C 1.52959 * 109.48435 * 150.02720 * 3 2 1 6 6 C 1.52959 * 109.81932 * 183.59253 * 5 3 2 7 7 C 1.53223 * 109.40426 * 296.40386 * 6 5 3 8 8 C 1.51272 * 108.53920 * 54.62651 * 7 6 5 9 9 N 1.28007 * 120.84937 * 128.63217 * 8 7 6 10 10 N 1.40099 * 120.00414 * 355.10681 * 9 8 7 11 11 C 1.46496 * 120.00178 * 185.26790 * 10 9 8 12 12 H 1.08995 * 109.47082 * 30.00481 * 11 10 9 13 13 C 1.52997 * 109.47271 * 270.00273 * 11 10 9 14 14 C 1.50698 * 109.46977 * 150.00220 * 11 10 9 15 15 H 1.08001 * 120.00319 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00000 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99909 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99793 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47026 * 90.00387 * 18 16 14 20 20 H 1.48502 * 109.46796 * 209.99708 * 18 16 14 21 21 H 1.48493 * 109.47299 * 329.99885 * 18 16 14 22 22 C 1.51265 * 118.29862 * 308.65271 * 8 7 6 23 23 H 1.09000 * 109.47298 * 60.00193 * 1 2 3 24 24 H 1.09005 * 109.47233 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47066 * 299.99829 * 1 2 3 26 26 H 1.09005 * 109.41145 * 303.69856 * 5 3 2 27 27 H 1.08997 * 109.41177 * 63.55463 * 5 3 2 28 28 H 1.09001 * 109.48300 * 56.38066 * 6 5 3 29 29 H 1.08998 * 109.48131 * 176.40635 * 6 5 3 30 30 H 1.09001 * 109.62484 * 174.34080 * 7 6 5 31 31 H 1.09006 * 109.62477 * 294.72089 * 7 6 5 32 32 H 0.96999 * 119.99633 * 5.26945 * 10 9 8 33 33 H 1.08990 * 109.47435 * 59.99738 * 13 11 10 34 34 H 1.09000 * 109.47518 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.46910 * 300.00016 * 13 11 10 36 36 H 0.96996 * 119.99578 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.62859 * 291.63339 * 22 8 7 38 38 H 1.08999 * 109.62550 * 171.06003 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9995 0.5138 5 6 3.3589 1.2635 0.7204 6 6 3.9466 2.6732 0.8035 7 6 4.2282 3.1914 -0.6107 8 6 2.9546 3.0938 -1.4212 9 7 2.5107 4.1038 -2.0704 10 7 3.1478 5.3461 -1.9547 11 6 2.5740 6.5270 -2.6047 12 1 1.4901 6.4233 -2.6551 13 6 3.1403 6.6559 -4.0201 14 6 2.9244 7.7581 -1.8094 15 1 3.5150 7.6698 -0.9096 16 6 2.4900 8.9973 -2.2300 17 7 1.7703 9.1049 -3.3255 18 14 2.9238 10.5233 -1.2437 19 1 4.2086 11.0821 -1.7359 20 1 1.8501 11.5369 -1.4024 21 1 3.0573 10.1641 0.1909 22 6 2.2189 1.7723 -1.4444 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.2198 0.8690 1.7270 27 1 4.0437 0.6184 0.1700 28 1 3.2356 3.3349 1.2982 29 1 4.8756 2.6467 1.3729 30 1 4.5522 4.2310 -0.5619 31 1 5.0076 2.5863 -1.0740 32 1 3.9689 5.4244 -1.4443 33 1 2.8870 5.7654 -4.5953 34 1 2.7138 7.5347 -4.5036 35 1 4.2242 6.7596 -3.9697 36 1 1.4644 9.9766 -3.6211 37 1 2.8099 1.0338 -1.9861 38 1 1.2521 1.9001 -1.9312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794522681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:34 Heat of formation + Delta-G solvation = -38.183968 kcal Electronic energy + Delta-G solvation = -17400.090971 eV Core-core repulsion = 14663.213932 eV Total energy + Delta-G solvation = -2736.877039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26651 -38.43155 -36.79323 -35.16086 -33.10354 -31.43992 -29.80669 -27.64192 -27.28906 -27.10935 -23.59266 -22.52877 -21.86686 -20.05246 -18.66613 -17.76425 -17.00853 -16.83508 -16.21439 -15.90499 -15.84591 -15.07520 -14.79614 -14.46180 -14.31948 -13.86868 -13.72484 -13.50820 -13.18358 -12.89021 -12.75226 -12.65816 -12.37013 -12.22863 -12.16036 -12.01758 -11.85505 -11.60845 -11.45622 -11.07692 -10.66968 -10.56086 -10.38700 -8.51905 -8.17462 -6.34783 1.41878 1.42836 1.51391 1.54480 2.25229 2.49197 2.85136 3.11040 3.80379 3.87852 3.99210 4.07403 4.22753 4.30945 4.50698 4.55520 4.58230 4.65880 4.73777 4.79025 4.89822 4.94880 4.96294 5.03301 5.10044 5.13641 5.23428 5.28940 5.36882 5.46223 5.58769 5.82367 5.91044 6.23025 6.27472 6.46565 6.87908 7.37359 7.91851 8.87573 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033750 B = 0.004875 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.429245 B = 5741.653066 C = 5917.249667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.099 3.901 4 H 0.055 0.945 5 C -0.107 4.107 6 C -0.100 4.100 7 C -0.111 4.111 8 C 0.028 3.972 9 N -0.264 5.264 10 N -0.652 5.652 11 C 0.308 3.692 12 H -0.004 1.004 13 C -0.135 4.135 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.971 3.029 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.064 4.064 23 H 0.040 0.960 24 H 0.104 0.896 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.372 0.628 33 H 0.015 0.985 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.266 0.734 37 H 0.094 0.906 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -15.474 8.297 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.040 3.960 4 H 0.073 0.927 5 C -0.145 4.145 6 C -0.139 4.139 7 C -0.151 4.151 8 C -0.167 4.167 9 N -0.071 5.071 10 N -0.392 5.392 11 C 0.204 3.796 12 H 0.014 0.986 13 C -0.195 4.195 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.554 5.554 18 Si 0.795 3.205 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.104 4.104 23 H 0.058 0.942 24 H 0.122 0.878 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.211 0.789 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.560 -15.039 7.431 16.847 hybrid contribution 0.655 1.240 0.567 1.513 sum 2.215 -13.799 7.998 16.103 Atomic orbital electron populations 1.22974 0.80075 1.03862 1.00419 1.87855 1.20882 1.27606 1.95035 1.22075 0.95927 0.84075 0.93938 0.92692 1.21521 0.94537 0.97074 1.01358 1.21401 1.01898 0.95754 0.94846 1.21137 0.95679 1.01378 0.96876 1.24792 0.98214 0.94817 0.98842 1.73460 1.23264 0.93403 1.17016 1.48456 1.28219 1.02250 1.60248 1.18037 0.91666 0.80397 0.89470 0.98646 1.22018 0.98848 0.99467 0.99123 1.21508 1.35000 0.91940 1.10040 0.92268 1.25726 0.94445 1.01910 0.96100 1.70026 1.36363 1.25300 1.23692 0.85367 0.78019 0.78237 0.78830 1.19662 1.20647 1.19350 1.20816 0.99770 0.91307 0.98528 0.94168 0.87807 0.93465 0.89850 0.89999 0.92993 0.88801 0.92757 0.88731 0.78875 0.96611 0.91393 0.95284 0.92434 0.88730 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.63 16 2 O -0.39 -8.88 10.35 -148.98 -1.54 -10.42 16 3 C 0.10 2.29 2.62 30.66 0.08 2.37 16 4 H 0.05 1.36 7.79 -2.38 -0.02 1.34 16 5 C -0.11 -2.07 5.46 30.57 0.17 -1.90 16 6 C -0.10 -2.13 5.94 30.66 0.18 -1.95 16 7 C -0.11 -2.97 5.92 30.10 0.18 -2.80 16 8 C 0.03 0.93 6.52 46.89 0.31 1.24 16 9 N -0.26 -11.29 11.43 -40.33 -0.46 -11.75 16 10 N -0.65 -30.45 5.99 -172.54 -1.03 -31.48 16 11 C 0.31 16.73 3.23 44.24 0.14 16.87 16 12 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 13 C -0.14 -7.05 9.29 71.98 0.67 -6.39 16 14 C -0.55 -30.38 8.74 25.60 0.22 -30.15 16 15 H 0.06 3.20 7.79 -2.91 -0.02 3.17 16 16 C 0.02 1.00 5.30 84.66 0.45 1.45 16 17 N -0.92 -52.71 11.32 21.45 0.24 -52.47 16 18 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C -0.06 -1.73 5.78 30.10 0.17 -1.56 16 23 H 0.04 0.74 8.03 -2.39 -0.02 0.72 16 24 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.05 0.77 8.09 -2.38 -0.02 0.75 16 26 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.65 5.57 -2.39 -0.01 1.64 16 31 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.37 16.10 6.07 -213.32 -1.30 14.81 16 33 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.87 8.02 -2.39 -0.02 1.85 16 Total: -1.00 -63.34 306.72 2.76 -60.57 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.27 Total: 21.73 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 3.80 Total: -21.18 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -1.25 Total: -95.70 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.54 Total: -10.42 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.34 2.76 -60.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794522681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.391 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds