Wall clock time and date at job start Mon Mar 30 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99606 * 2 1 4 4 C 1.52996 * 109.47024 * 305.35180 * 3 2 1 5 5 C 1.50700 * 109.46632 * 185.35274 * 3 2 1 6 6 N 1.28012 * 119.99837 * 239.99919 * 5 3 2 7 7 N 1.40099 * 120.00182 * 180.02562 * 6 5 3 8 8 C 1.46502 * 119.99924 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47097 * 329.99632 * 8 7 6 10 10 C 1.53000 * 109.46826 * 89.99860 * 8 7 6 11 11 C 1.50697 * 109.46920 * 209.99657 * 8 7 6 12 12 H 1.08004 * 120.00016 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00083 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99681 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00064 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47266 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47228 * 119.99884 * 15 13 11 18 18 H 1.48496 * 109.47186 * 239.99704 * 15 13 11 19 19 C 1.52995 * 109.47150 * 65.34961 * 3 2 1 20 20 C 1.52998 * 117.51920 * 224.18047 * 19 3 2 21 21 C 1.52992 * 117.50236 * 292.81360 * 19 3 2 22 22 H 1.09000 * 109.47171 * 171.85793 * 1 2 3 23 23 H 1.09001 * 109.47567 * 291.85785 * 1 2 3 24 24 H 1.09001 * 109.47307 * 51.85992 * 1 2 3 25 25 H 1.08999 * 109.47242 * 180.02562 * 4 3 2 26 26 H 1.09008 * 109.47145 * 299.99855 * 4 3 2 27 27 H 1.08997 * 109.47467 * 59.99917 * 4 3 2 28 28 H 1.07998 * 120.00524 * 59.99897 * 5 3 2 29 29 H 0.97000 * 119.99403 * 359.97438 * 7 6 5 30 30 H 1.08996 * 109.47469 * 59.99999 * 10 8 7 31 31 H 1.09008 * 109.46868 * 179.97438 * 10 8 7 32 32 H 1.08999 * 109.47143 * 299.99467 * 10 8 7 33 33 H 0.97001 * 119.99870 * 180.02562 * 14 13 11 34 34 H 1.09002 * 115.54722 * 78.48447 * 19 3 2 35 35 H 1.09002 * 117.49964 * 214.97038 * 20 19 3 36 36 H 1.09000 * 117.49679 * 359.97438 * 20 19 3 37 37 H 1.09003 * 117.50003 * 359.97438 * 21 19 3 38 38 H 1.09008 * 117.50316 * 144.99924 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4551 2.1109 -1.1765 5 6 3.5068 1.1891 -0.1325 6 7 4.2688 1.6554 0.7843 7 7 5.6601 1.5477 0.6609 8 6 6.5321 2.0819 1.7099 9 1 6.0473 2.9339 2.1864 10 6 6.7974 0.9960 2.7546 11 6 7.8382 2.5230 1.1011 12 1 8.0021 2.4164 0.0390 13 6 8.8239 3.0626 1.9001 14 7 8.6240 3.1928 3.1934 15 14 10.4425 3.6100 1.1454 16 1 10.4164 3.3587 -0.3180 17 1 10.6399 5.0604 1.3955 18 1 11.5582 2.8456 1.7586 19 6 1.6680 2.0161 1.3110 20 6 1.2213 3.4771 1.2275 21 6 0.2027 2.3831 1.5541 22 1 -0.3633 -1.0173 -0.1455 23 1 -0.3634 0.3826 0.9538 24 1 -0.3634 0.6347 -0.8083 25 1 1.8987 3.1065 -1.1768 26 1 1.6989 1.6046 -2.1106 27 1 0.3726 2.1950 -1.0807 28 1 3.9366 0.7121 -1.0010 29 1 6.0460 1.1193 -0.1192 30 1 7.2822 0.1440 2.2781 31 1 7.4465 1.3934 3.5350 32 1 5.8527 0.6770 3.1950 33 1 9.3172 3.5727 3.7555 34 1 2.2627 1.7203 2.1752 35 1 1.5222 4.1424 2.0369 36 1 1.1717 3.9324 0.2384 37 1 -0.5175 2.1188 0.7798 38 1 -0.1666 2.3288 2.5782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814880710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:03 Heat of formation + Delta-G solvation = 13.507557 kcal Electronic energy + Delta-G solvation = -17513.495471 eV Core-core repulsion = 14778.859945 eV Total energy + Delta-G solvation = -2734.635527 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83050 -38.02227 -36.76870 -35.86966 -33.43218 -31.51409 -29.06812 -27.93660 -27.28349 -25.07232 -23.23260 -22.95029 -22.12631 -20.09713 -18.73329 -17.73917 -17.23732 -17.12374 -16.57478 -16.33115 -15.57607 -15.31761 -14.60430 -14.42897 -14.22369 -13.59781 -13.42184 -13.15694 -13.03042 -12.90296 -12.84191 -12.63884 -12.39790 -12.20841 -12.09440 -12.06221 -11.79001 -11.17154 -11.09580 -10.95749 -10.80176 -10.58262 -10.24430 -8.69858 -8.18166 -6.34852 1.39884 1.42520 1.42959 1.55051 2.13181 2.45387 2.85917 3.10783 3.29119 3.64072 3.88576 4.02603 4.12301 4.29156 4.40039 4.56436 4.61858 4.70440 4.72654 4.77412 4.90717 4.94904 4.97047 5.02120 5.08911 5.13556 5.24178 5.27090 5.31026 5.40870 5.53839 5.77549 5.86862 6.18357 6.37129 6.42955 6.85707 7.36902 7.82213 8.87549 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039688 B = 0.004839 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.335865 B = 5785.466690 C = 5866.642968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.399 6.399 3 C 0.214 3.786 4 C -0.172 4.172 5 C 0.001 3.999 6 N -0.224 5.224 7 N -0.649 5.649 8 C 0.310 3.690 9 H 0.000 1.000 10 C -0.136 4.136 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.276 1.276 19 C -0.184 4.184 20 C -0.176 4.176 21 C -0.164 4.164 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.371 0.629 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.014 0.986 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.767 -2.375 -7.408 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.317 6.317 3 C 0.173 3.827 4 C -0.230 4.230 5 C -0.214 4.214 6 N -0.034 5.034 7 N -0.387 5.387 8 C 0.206 3.794 9 H 0.018 0.982 10 C -0.195 4.195 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.182 4.182 14 N -0.554 5.554 15 Si 0.796 3.204 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.203 4.203 20 C -0.213 4.213 21 C -0.200 4.200 22 H 0.112 0.888 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.208 0.792 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.464 -1.941 -6.208 17.702 hybrid contribution 1.354 -0.177 -0.879 1.624 sum -15.110 -2.117 -7.086 16.823 Atomic orbital electron populations 1.23320 0.79725 1.03800 1.01805 1.87937 1.21610 1.27072 1.95126 1.19225 0.86715 0.83259 0.93498 1.22454 1.02573 1.00653 0.97294 1.25074 0.94783 1.04416 0.97162 1.73348 0.92907 1.12496 1.24607 1.48590 0.97744 1.67308 1.25036 1.18069 0.86486 0.90407 0.84469 0.98196 1.22024 0.98291 0.98520 1.00681 1.21554 0.99917 1.42317 0.94737 0.92155 1.25721 1.02070 0.95201 0.95183 1.70029 1.35310 1.44847 1.05180 0.85310 0.78592 0.77854 0.78637 1.19134 1.20441 1.20194 1.22555 0.99001 0.99437 0.99264 1.23112 1.03576 0.90883 1.03694 1.23298 0.91045 1.01912 1.03750 0.88813 0.92315 0.91640 0.90971 0.90713 0.89090 0.87770 0.79223 0.95225 0.91236 0.96652 0.92410 0.90279 0.89795 0.87034 0.86081 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.26 113.37 1.05 1.21 16 2 O -0.40 -11.00 10.33 -148.98 -1.54 -12.54 16 3 C 0.21 5.99 1.07 -11.54 -0.01 5.98 16 4 C -0.17 -3.53 6.80 71.98 0.49 -3.04 16 5 C 0.00 0.03 9.93 88.67 0.88 0.91 16 6 N -0.22 -9.64 9.96 -50.46 -0.50 -10.14 16 7 N -0.65 -30.55 6.09 -172.53 -1.05 -31.60 16 8 C 0.31 16.75 3.23 44.24 0.14 16.89 16 9 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 10 C -0.14 -7.12 9.29 71.98 0.67 -6.45 16 11 C -0.55 -30.39 8.74 25.60 0.22 -30.17 16 12 H 0.06 3.27 7.79 -2.91 -0.02 3.24 16 13 C 0.02 1.01 5.30 84.66 0.45 1.46 16 14 N -0.92 -52.63 11.32 21.45 0.24 -52.38 16 15 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 C -0.18 -5.28 4.65 -10.80 -0.05 -5.33 16 20 C -0.18 -4.27 9.69 30.59 0.30 -3.97 16 21 C -0.16 -3.29 7.85 30.59 0.24 -3.05 16 22 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 0.98 5.29 -2.39 -0.01 0.97 16 24 H 0.07 0.88 5.77 -2.39 -0.01 0.86 16 25 H 0.07 1.55 6.65 -2.39 -0.02 1.53 16 26 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.09 1.37 5.13 -2.39 -0.01 1.36 16 28 H 0.11 3.43 8.00 -2.91 -0.02 3.41 16 29 H 0.37 16.26 8.56 -213.32 -1.83 14.43 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.07 3.90 6.07 -2.38 -0.01 3.88 16 32 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.08 2.88 7.63 -2.39 -0.02 2.86 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.11 2.36 5.89 -2.39 -0.01 2.35 16 37 H 0.12 1.80 5.14 -2.39 -0.01 1.78 16 38 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -64.04 301.58 2.78 -61.26 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.77 Total: 25.82 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 4.38 Total: -25.54 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -1.31 Total: -94.12 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.54 Total: -12.54 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -64.04 2.78 -61.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814880710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.767 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds