Wall clock time and date at job start Mon Mar 30 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99506 * 2 1 4 4 C 1.53008 * 109.46995 * 305.96762 * 3 2 1 5 5 C 1.50694 * 109.47503 * 65.97271 * 3 2 1 6 6 N 1.28011 * 120.00232 * 359.97438 * 5 3 2 7 7 N 1.40095 * 120.00054 * 179.97438 * 6 5 3 8 8 C 1.46508 * 119.99793 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47075 * 29.99974 * 8 7 6 10 10 C 1.53002 * 109.46748 * 270.00244 * 8 7 6 11 11 C 1.50696 * 109.47039 * 150.00272 * 8 7 6 12 12 H 1.07999 * 119.99854 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00141 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99787 * 0.02562 * 13 11 8 15 15 Si 1.86792 * 120.00279 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47063 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47367 * 120.00189 * 15 13 11 18 18 H 1.48506 * 109.47104 * 240.00366 * 15 13 11 19 19 C 1.53007 * 109.46659 * 185.97363 * 3 2 1 20 20 C 1.52997 * 117.49834 * 14.37002 * 19 3 2 21 21 C 1.52998 * 117.49436 * 305.71054 * 19 3 2 22 22 H 1.09002 * 109.47400 * 305.57235 * 1 2 3 23 23 H 1.08998 * 109.47301 * 65.57745 * 1 2 3 24 24 H 1.09007 * 109.46921 * 185.58167 * 1 2 3 25 25 H 1.09001 * 109.46540 * 180.02562 * 4 3 2 26 26 H 1.08996 * 109.46922 * 300.00395 * 4 3 2 27 27 H 1.08999 * 109.46571 * 60.00575 * 4 3 2 28 28 H 1.08001 * 119.99999 * 180.02562 * 5 3 2 29 29 H 0.96992 * 120.00404 * 0.02562 * 7 6 5 30 30 H 1.09004 * 109.46617 * 180.02562 * 10 8 7 31 31 H 1.08993 * 109.47283 * 299.99680 * 10 8 7 32 32 H 1.08997 * 109.47198 * 60.00701 * 10 8 7 33 33 H 0.97002 * 120.00336 * 179.97438 * 14 13 11 34 34 H 1.08999 * 115.54767 * 160.04247 * 19 3 2 35 35 H 1.08993 * 117.50319 * 0.02562 * 20 19 3 36 36 H 1.09005 * 117.49582 * 145.02487 * 20 19 3 37 37 H 1.08999 * 117.49576 * 214.98167 * 21 19 3 38 38 H 1.08995 * 117.50530 * 0.02562 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4435 2.1160 -1.1676 5 6 1.6860 1.9998 1.2976 6 7 0.9854 1.4012 2.1862 7 7 0.6845 2.0464 3.3927 8 6 -0.1169 1.3611 4.4099 9 1 0.0528 0.2865 4.3429 10 6 -1.5995 1.6589 4.1769 11 6 0.2844 1.8487 5.7781 12 1 1.0592 2.5942 5.8799 13 6 -0.3375 1.3432 6.9000 14 7 -1.2807 0.4350 6.7761 15 14 0.1594 1.9481 8.5960 16 1 1.2350 2.9634 8.4639 17 1 -1.0161 2.5576 9.2683 18 1 0.6541 0.8046 9.4041 19 6 3.5283 1.1879 -0.1501 20 6 4.0912 -0.1617 -0.6000 21 6 4.2700 0.2979 0.8491 22 1 -0.3634 0.5978 0.8359 23 1 -0.3634 0.4249 -0.9357 24 1 -0.3633 -1.0229 0.1000 25 1 1.8872 3.1116 -1.1678 26 1 1.6781 1.6138 -2.1061 27 1 0.3620 2.1997 -1.0606 28 1 2.0441 3.0027 1.4776 29 1 1.0066 2.9468 3.5547 30 1 -2.1957 1.1493 4.9339 31 1 -1.7692 2.7334 4.2439 32 1 -1.8898 1.3061 3.1873 33 1 -1.7180 0.0790 7.5653 34 1 4.0373 2.0868 -0.4980 35 1 3.3801 -0.9657 -0.7895 36 1 4.9709 -0.1508 -1.2436 37 1 5.2673 0.6110 1.1583 38 1 3.6766 -0.2042 1.6131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814880712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:06 Heat of formation + Delta-G solvation = 25.249808 kcal Electronic energy + Delta-G solvation = -17669.076648 eV Core-core repulsion = 14934.950304 eV Total energy + Delta-G solvation = -2734.126344 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.30303 -36.22783 -35.74091 -33.82808 -31.61095 -30.46786 -27.26217 -26.66861 -25.20708 -23.59710 -22.09371 -21.28008 -20.12886 -19.35481 -17.09650 -16.22849 -15.82073 -15.46430 -14.80368 -14.70419 -14.31829 -13.49446 -13.04697 -13.00624 -12.73778 -12.44836 -12.04751 -11.86748 -11.46234 -11.23735 -11.14467 -11.02736 -10.92410 -10.73523 -10.45709 -10.23104 -10.14519 -10.05662 -9.96564 -9.62551 -9.03920 -8.77981 -8.49648 -6.90954 -6.11741 -4.19382 2.98891 3.24104 3.31677 3.35050 3.69257 4.10415 4.17614 4.39572 4.80380 5.08707 5.16871 5.20838 5.28553 5.43702 5.54787 5.71738 5.77873 5.81071 5.85415 5.98062 6.06485 6.20067 6.24910 6.34549 6.42361 6.47624 6.75429 6.99859 7.00255 7.18744 7.54542 7.63386 7.83387 7.90268 8.21028 8.37310 8.90028 9.45486 9.48247 10.94272 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.005416 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.469519 B = 5168.803878 C = 5528.020012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.214 3.786 4 C -0.168 4.168 5 C -0.063 4.063 6 N -0.190 5.190 7 N -0.639 5.639 8 C 0.299 3.701 9 H 0.039 0.961 10 C -0.149 4.149 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.902 3.098 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.142 4.142 20 C -0.166 4.166 21 C -0.168 4.168 22 H 0.067 0.933 23 H 0.030 0.970 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.365 0.635 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.010 0.990 33 H 0.263 0.737 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.069 2.039 -13.971 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.286 6.286 3 C 0.172 3.828 4 C -0.227 4.227 5 C -0.278 4.278 6 N 0.000 5.000 7 N -0.376 5.376 8 C 0.197 3.803 9 H 0.057 0.943 10 C -0.208 4.208 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.729 3.271 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.161 4.161 20 C -0.203 4.203 21 C -0.205 4.205 22 H 0.086 0.914 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.201 0.799 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.439 0.798 -13.480 14.557 hybrid contribution 0.498 1.831 1.065 2.176 sum 5.936 2.629 -12.415 14.010 Atomic orbital electron populations 1.22854 0.81041 1.02707 1.00248 1.87845 1.19963 1.26023 1.94782 1.19340 0.90975 0.82702 0.89762 1.22325 1.01692 1.00496 0.98159 1.25536 1.06031 0.99094 0.97093 1.73345 1.07408 1.25392 0.93808 1.49059 1.59729 1.16312 1.12492 1.18446 0.85830 0.93231 0.82810 0.94266 1.22199 1.00684 0.99232 0.98723 1.21288 1.20709 1.24339 0.90334 0.92290 1.24862 0.94770 0.94829 0.99246 1.69902 1.24590 1.28328 1.29649 0.86389 0.78392 0.78659 0.83639 1.19824 1.20876 1.20833 1.22150 0.92325 0.95491 1.06182 1.22864 1.02185 0.97752 0.97495 1.22888 1.00843 1.03454 0.93276 0.91425 0.95139 0.90464 0.91576 0.91571 0.91955 0.89000 0.79949 0.89287 0.95688 0.97090 0.92679 0.87017 0.87775 0.89524 0.89397 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.87 101.05 1.00 1.42 16 2 O -0.37 -5.94 8.46 -35.23 -0.30 -6.24 16 3 C 0.21 3.08 0.90 -91.77 -0.08 2.99 16 4 C -0.17 -1.96 8.04 37.16 0.30 -1.66 16 5 C -0.06 -1.08 9.08 -13.87 -0.13 -1.20 16 6 N -0.19 -3.91 8.50 32.67 0.28 -3.63 16 7 N -0.64 -14.44 6.09 -5.88 -0.04 -14.48 16 8 C 0.30 7.76 3.23 -69.08 -0.22 7.54 16 9 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 10 C -0.15 -3.71 9.29 37.16 0.35 -3.36 16 11 C -0.53 -14.42 8.74 -34.44 -0.30 -14.72 16 12 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 15 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.14 -1.81 5.05 -90.62 -0.46 -2.26 16 20 C -0.17 -1.99 9.89 -26.69 -0.26 -2.26 16 21 C -0.17 -2.28 9.88 -26.69 -0.26 -2.54 16 22 H 0.07 1.21 5.70 -51.93 -0.30 0.91 16 23 H 0.03 0.39 6.67 -51.93 -0.35 0.05 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.75 6.60 -51.93 -0.34 0.41 16 28 H 0.09 1.46 8.00 -52.49 -0.42 1.04 16 29 H 0.36 7.76 8.56 -182.61 -1.56 6.19 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.37 7.14 -51.93 -0.37 1.00 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -28.75 310.76 -7.36 -36.11 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.43 Total: 6.29 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.17 Total: -14.36 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.87 Total: -42.51 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.30 Total: -6.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.75 -7.36 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814880712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.359 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds