Wall clock time and date at job start Mon Mar 30 2020 03:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99506 * 2 1 4 4 C 1.53008 * 109.46995 * 305.96762 * 3 2 1 5 5 C 1.50694 * 109.47503 * 65.97271 * 3 2 1 6 6 N 1.28011 * 120.00232 * 359.97438 * 5 3 2 7 7 N 1.40095 * 120.00054 * 179.97438 * 6 5 3 8 8 C 1.46508 * 119.99793 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47075 * 29.99974 * 8 7 6 10 10 C 1.53002 * 109.46748 * 270.00244 * 8 7 6 11 11 C 1.50696 * 109.47039 * 150.00272 * 8 7 6 12 12 H 1.07999 * 119.99854 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00141 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99787 * 0.02562 * 13 11 8 15 15 Si 1.86792 * 120.00279 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47063 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47367 * 120.00189 * 15 13 11 18 18 H 1.48506 * 109.47104 * 240.00366 * 15 13 11 19 19 C 1.53007 * 109.46659 * 185.97363 * 3 2 1 20 20 C 1.52997 * 117.49834 * 14.37002 * 19 3 2 21 21 C 1.52998 * 117.49436 * 305.71054 * 19 3 2 22 22 H 1.09002 * 109.47400 * 305.57235 * 1 2 3 23 23 H 1.08998 * 109.47301 * 65.57745 * 1 2 3 24 24 H 1.09007 * 109.46921 * 185.58167 * 1 2 3 25 25 H 1.09001 * 109.46540 * 180.02562 * 4 3 2 26 26 H 1.08996 * 109.46922 * 300.00395 * 4 3 2 27 27 H 1.08999 * 109.46571 * 60.00575 * 4 3 2 28 28 H 1.08001 * 119.99999 * 180.02562 * 5 3 2 29 29 H 0.96992 * 120.00404 * 0.02562 * 7 6 5 30 30 H 1.09004 * 109.46617 * 180.02562 * 10 8 7 31 31 H 1.08993 * 109.47283 * 299.99680 * 10 8 7 32 32 H 1.08997 * 109.47198 * 60.00701 * 10 8 7 33 33 H 0.97002 * 120.00336 * 179.97438 * 14 13 11 34 34 H 1.08999 * 115.54767 * 160.04247 * 19 3 2 35 35 H 1.08993 * 117.50319 * 0.02562 * 20 19 3 36 36 H 1.09005 * 117.49582 * 145.02487 * 20 19 3 37 37 H 1.08999 * 117.49576 * 214.98167 * 21 19 3 38 38 H 1.08995 * 117.50530 * 0.02562 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4435 2.1160 -1.1676 5 6 1.6860 1.9998 1.2976 6 7 0.9854 1.4012 2.1862 7 7 0.6845 2.0464 3.3927 8 6 -0.1169 1.3611 4.4099 9 1 0.0528 0.2865 4.3429 10 6 -1.5995 1.6589 4.1769 11 6 0.2844 1.8487 5.7781 12 1 1.0592 2.5942 5.8799 13 6 -0.3375 1.3432 6.9000 14 7 -1.2807 0.4350 6.7761 15 14 0.1594 1.9481 8.5960 16 1 1.2350 2.9634 8.4639 17 1 -1.0161 2.5576 9.2683 18 1 0.6541 0.8046 9.4041 19 6 3.5283 1.1879 -0.1501 20 6 4.0912 -0.1617 -0.6000 21 6 4.2700 0.2979 0.8491 22 1 -0.3634 0.5978 0.8359 23 1 -0.3634 0.4249 -0.9357 24 1 -0.3633 -1.0229 0.1000 25 1 1.8872 3.1116 -1.1678 26 1 1.6781 1.6138 -2.1061 27 1 0.3620 2.1997 -1.0606 28 1 2.0441 3.0027 1.4776 29 1 1.0066 2.9468 3.5547 30 1 -2.1957 1.1493 4.9339 31 1 -1.7692 2.7334 4.2439 32 1 -1.8898 1.3061 3.1873 33 1 -1.7180 0.0790 7.5653 34 1 4.0373 2.0868 -0.4980 35 1 3.3801 -0.9657 -0.7895 36 1 4.9709 -0.1508 -1.2436 37 1 5.2673 0.6110 1.1583 38 1 3.6766 -0.2042 1.6131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814880712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:05 Heat of formation + Delta-G solvation = 7.649795 kcal Electronic energy + Delta-G solvation = -17669.839842 eV Core-core repulsion = 14934.950304 eV Total energy + Delta-G solvation = -2734.889538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49130 -37.84329 -36.92046 -35.68069 -33.29949 -31.87907 -28.95222 -27.88311 -27.30020 -24.81179 -23.15755 -22.70762 -21.91563 -20.57752 -18.88993 -17.68310 -17.29775 -16.93301 -16.48178 -15.97953 -15.40585 -15.28435 -14.53754 -14.46251 -14.14265 -13.90378 -13.56069 -13.15842 -12.94586 -12.91745 -12.68659 -12.49213 -12.32689 -12.22194 -12.13902 -12.01475 -11.81202 -11.26013 -11.07772 -11.06176 -10.84211 -10.59074 -10.13485 -8.62994 -8.18979 -6.35839 1.40408 1.41132 1.53081 1.57335 2.17142 2.44675 2.94350 3.05620 3.09885 3.76228 3.93419 4.07725 4.27752 4.39849 4.51239 4.55838 4.61582 4.71289 4.75178 4.87787 4.91635 4.94173 4.99594 5.02699 5.12801 5.17233 5.28140 5.34158 5.39189 5.45542 5.53880 5.78850 5.86788 6.17807 6.42059 6.44518 6.86502 7.36218 7.88019 8.86391 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.005416 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.469519 B = 5168.803878 C = 5528.020012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.203 3.797 4 C -0.162 4.162 5 C -0.030 4.030 6 N -0.233 5.233 7 N -0.655 5.655 8 C 0.311 3.689 9 H -0.006 1.006 10 C -0.133 4.133 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.971 3.029 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.280 1.280 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.187 4.187 22 H 0.039 0.961 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.368 0.632 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 3.420 -15.462 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.161 3.839 4 C -0.221 4.221 5 C -0.245 4.245 6 N -0.040 5.040 7 N -0.392 5.392 8 C 0.207 3.793 9 H 0.012 0.988 10 C -0.193 4.193 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.182 4.182 14 N -0.554 5.554 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.205 1.205 19 C -0.158 4.158 20 C -0.186 4.186 21 C -0.224 4.224 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.205 0.795 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.869 2.182 -14.988 16.631 hybrid contribution 0.136 1.377 1.358 1.939 sum 7.005 3.559 -13.630 15.733 Atomic orbital electron populations 1.22832 0.80884 1.02628 1.00375 1.87841 1.20281 1.27349 1.94785 1.19763 0.92491 0.82339 0.89264 1.22289 1.01245 1.01283 0.97238 1.26333 1.01931 0.99454 0.96807 1.73479 1.10350 1.26203 0.93929 1.48612 1.61004 1.16375 1.13230 1.18013 0.86778 0.90853 0.83700 0.98765 1.21993 0.99954 0.99052 0.98267 1.21558 1.20966 1.24600 0.91409 0.92367 1.25721 0.94613 0.94821 1.03079 1.70027 1.25359 1.29149 1.30824 0.85324 0.78281 0.78169 0.78699 1.19202 1.20026 1.20541 1.22325 0.90910 0.97090 1.05521 1.22893 1.02663 0.96706 0.96338 1.22823 1.01369 1.04800 0.93395 0.94274 0.92456 0.90246 0.89338 0.89772 0.92602 0.87363 0.79512 0.91459 0.95219 0.96389 0.92422 0.83822 0.89272 0.86465 0.87674 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.87 113.37 1.12 2.00 16 2 O -0.38 -12.13 8.46 -148.98 -1.26 -13.39 16 3 C 0.20 5.42 0.90 -11.54 -0.01 5.40 16 4 C -0.16 -3.20 8.04 71.98 0.58 -2.62 16 5 C -0.03 -0.98 9.08 88.66 0.80 -0.17 16 6 N -0.23 -9.76 8.50 -50.47 -0.43 -10.19 16 7 N -0.65 -30.42 6.09 -172.51 -1.05 -31.47 16 8 C 0.31 16.78 3.23 44.24 0.14 16.92 16 9 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 10 C -0.13 -6.85 9.29 71.98 0.67 -6.18 16 11 C -0.55 -30.57 8.74 25.60 0.22 -30.35 16 12 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 13 C 0.02 0.98 5.30 84.65 0.45 1.43 16 14 N -0.92 -52.88 11.32 21.45 0.24 -52.63 16 15 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 C -0.14 -3.12 5.05 -10.79 -0.05 -3.17 16 20 C -0.15 -3.19 9.89 30.62 0.30 -2.89 16 21 C -0.19 -4.85 9.88 30.62 0.30 -4.55 16 22 H 0.04 1.42 5.70 -2.39 -0.01 1.41 16 23 H 0.06 1.39 6.67 -2.39 -0.02 1.38 16 24 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.18 6.60 -2.39 -0.02 1.17 16 28 H 0.11 3.21 8.00 -2.91 -0.02 3.18 16 29 H 0.37 15.91 8.56 -213.33 -1.83 14.09 16 30 H 0.07 3.74 6.07 -2.38 -0.01 3.72 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.09 2.21 7.14 -2.39 -0.02 2.19 16 36 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.05 310.76 3.26 -60.79 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.79 Total: 25.66 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 4.53 Total: -24.17 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -1.24 Total: -94.30 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.26 Total: -13.39 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -64.05 3.26 -60.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814880712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.438 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds