Wall clock time and date at job start Mon Mar 30 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99502 * 2 1 4 4 C 1.53003 * 109.47319 * 305.96787 * 3 2 1 5 5 C 1.50697 * 109.46990 * 65.97264 * 3 2 1 6 6 N 1.28005 * 120.00424 * 359.97438 * 5 3 2 7 7 N 1.40095 * 120.00264 * 179.97438 * 6 5 3 8 8 C 1.46497 * 120.00004 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47599 * 329.99871 * 8 7 6 10 10 C 1.53002 * 109.47335 * 90.00429 * 8 7 6 11 11 C 1.50707 * 109.47057 * 209.99942 * 8 7 6 12 12 H 1.07998 * 120.00177 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99954 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99912 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00088 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47082 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47000 * 120.00015 * 15 13 11 18 18 H 1.48499 * 109.47368 * 240.00383 * 15 13 11 19 19 C 1.53004 * 109.46912 * 185.97169 * 3 2 1 20 20 C 1.52996 * 117.49823 * 14.37369 * 19 3 2 21 21 C 1.53008 * 117.49698 * 305.71579 * 19 3 2 22 22 H 1.08998 * 109.46615 * 185.57424 * 1 2 3 23 23 H 1.08997 * 109.47344 * 305.57249 * 1 2 3 24 24 H 1.09004 * 109.47008 * 65.57267 * 1 2 3 25 25 H 1.08994 * 109.46895 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.47099 * 300.00395 * 4 3 2 27 27 H 1.09001 * 109.46961 * 59.99941 * 4 3 2 28 28 H 1.08000 * 119.99697 * 179.97438 * 5 3 2 29 29 H 0.97005 * 120.00026 * 0.02562 * 7 6 5 30 30 H 1.09005 * 109.46879 * 59.99707 * 10 8 7 31 31 H 1.08998 * 109.46845 * 299.99705 * 10 8 7 32 32 H 1.09001 * 109.47442 * 180.02562 * 10 8 7 33 33 H 0.96999 * 119.99476 * 180.02562 * 14 13 11 34 34 H 1.08995 * 115.54842 * 160.04697 * 19 3 2 35 35 H 1.09006 * 117.50441 * 0.02562 * 20 19 3 36 36 H 1.08999 * 117.49805 * 145.02117 * 20 19 3 37 37 H 1.08995 * 117.49634 * 214.97842 * 21 19 3 38 38 H 1.08998 * 117.49301 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4436 2.1161 -1.1675 5 6 1.6859 1.9997 1.2977 6 7 0.9853 1.4011 2.1862 7 7 0.6844 2.0462 3.3928 8 6 -0.1170 1.3609 4.4098 9 1 -0.8048 0.6684 3.9246 10 6 0.8077 0.5861 5.3509 11 6 -0.9012 2.3767 5.2000 12 1 -0.8119 3.4276 4.9676 13 6 -1.7334 1.9643 6.2190 14 7 -1.8425 0.6845 6.5017 15 14 -2.7059 3.2232 7.1980 16 1 -2.4092 4.5852 6.6859 17 1 -4.1580 2.9468 7.0554 18 1 -2.3242 3.1386 8.6306 19 6 3.5283 1.1880 -0.1501 20 6 4.0913 -0.1616 -0.6000 21 6 4.2701 0.2979 0.8491 22 1 -0.3632 -1.0228 0.0998 23 1 -0.3634 0.5978 0.8358 24 1 -0.3633 0.4250 -0.9357 25 1 1.8872 3.1116 -1.1677 26 1 1.6781 1.6139 -2.1061 27 1 0.3621 2.1998 -1.0606 28 1 2.0447 3.0023 1.4781 29 1 1.0066 2.9467 3.5548 30 1 1.4954 1.2787 5.8361 31 1 1.3748 -0.1486 4.7794 32 1 0.2114 0.0758 6.1073 33 1 -2.4283 0.3944 7.2184 34 1 4.0373 2.0869 -0.4979 35 1 3.3802 -0.9657 -0.7896 36 1 4.9709 -0.1506 -1.2436 37 1 5.2673 0.6110 1.1583 38 1 3.6766 -0.2036 1.6136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814880715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:11 Heat of formation + Delta-G solvation = 25.157214 kcal Electronic energy + Delta-G solvation = -17665.530342 eV Core-core repulsion = 14931.399983 eV Total energy + Delta-G solvation = -2734.130359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.30270 -36.22854 -35.74625 -33.82615 -31.60981 -30.46524 -27.25977 -26.63756 -25.20607 -23.59859 -22.11456 -21.28823 -20.12860 -19.34712 -17.09714 -16.20936 -15.83547 -15.46179 -14.80482 -14.72309 -14.31870 -13.56198 -13.01914 -12.90608 -12.67493 -12.46405 -12.12116 -11.94164 -11.32434 -11.26913 -11.15828 -11.03264 -10.93137 -10.73101 -10.39506 -10.24595 -10.21027 -10.05659 -9.94826 -9.62936 -9.06588 -8.74455 -8.50485 -6.90628 -6.12139 -4.20040 2.99072 3.23377 3.30981 3.34183 3.68943 4.09356 4.17394 4.39074 4.79588 5.08151 5.15420 5.20345 5.28304 5.43939 5.54766 5.73363 5.78569 5.80955 5.84875 5.96847 6.07383 6.20839 6.25271 6.36482 6.41195 6.45117 6.77209 7.01094 7.04979 7.20965 7.55175 7.63389 7.82949 7.91514 8.20714 8.37466 8.89632 9.45335 9.47884 10.93768 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.005197 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.644114 B = 5386.599048 C = 5546.821751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.214 3.786 4 C -0.169 4.169 5 C -0.063 4.063 6 N -0.190 5.190 7 N -0.639 5.639 8 C 0.300 3.700 9 H 0.038 0.962 10 C -0.149 4.149 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.901 3.099 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.142 4.142 20 C -0.166 4.166 21 C -0.168 4.168 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.365 0.635 30 H 0.024 0.976 31 H 0.012 0.988 32 H 0.088 0.912 33 H 0.263 0.737 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.054 1.147 -13.008 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.287 6.287 3 C 0.172 3.828 4 C -0.227 4.227 5 C -0.278 4.278 6 N 0.000 5.000 7 N -0.376 5.376 8 C 0.198 3.802 9 H 0.056 0.944 10 C -0.209 4.209 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.524 5.524 15 Si 0.729 3.271 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.161 4.161 20 C -0.203 4.203 21 C -0.205 4.205 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.201 0.799 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.449 -0.107 -12.505 14.556 hybrid contribution -0.197 2.142 0.729 2.271 sum 7.252 2.035 -11.777 13.979 Atomic orbital electron populations 1.22860 0.80949 1.02724 1.00348 1.87838 1.20030 1.26010 1.94795 1.19337 0.90927 0.82728 0.89789 1.22325 1.01775 1.00477 0.98119 1.25534 1.06116 0.99065 0.97041 1.73342 1.07330 1.25424 0.93861 1.49063 1.59852 1.16191 1.12494 1.18439 0.87258 0.91851 0.82688 0.94371 1.22193 0.98986 0.98650 1.01034 1.21295 1.25483 0.93393 1.16582 0.92301 1.24865 0.96538 0.95490 0.96800 1.69910 1.37948 1.13835 1.30709 0.86394 0.79701 0.81281 0.79727 1.19832 1.20858 1.20854 1.22155 0.92361 0.95485 1.06103 1.22864 1.02194 0.97791 0.97424 1.22880 1.00797 1.03533 0.93293 0.90458 0.91342 0.95102 0.91578 0.91582 0.91887 0.89006 0.79944 0.95700 0.96917 0.89352 0.92675 0.87012 0.87761 0.89516 0.89431 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.87 101.05 1.00 1.42 16 2 O -0.37 -5.95 8.46 -35.23 -0.30 -6.25 16 3 C 0.21 3.07 0.90 -91.77 -0.08 2.99 16 4 C -0.17 -1.98 8.04 37.16 0.30 -1.69 16 5 C -0.06 -1.08 9.08 -13.87 -0.13 -1.20 16 6 N -0.19 -3.91 8.50 32.67 0.28 -3.63 16 7 N -0.64 -14.44 6.09 -5.88 -0.04 -14.48 16 8 C 0.30 7.78 3.23 -69.08 -0.22 7.56 16 9 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 10 C -0.15 -3.78 9.29 37.16 0.35 -3.44 16 11 C -0.53 -14.37 8.74 -34.44 -0.30 -14.67 16 12 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.14 -1.78 5.05 -90.62 -0.46 -2.24 16 20 C -0.17 -1.96 9.89 -26.70 -0.26 -2.22 16 21 C -0.17 -2.23 9.88 -26.69 -0.26 -2.49 16 22 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.07 1.25 5.70 -51.93 -0.30 0.95 16 24 H 0.03 0.41 6.67 -51.93 -0.35 0.06 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.78 6.60 -51.93 -0.34 0.43 16 28 H 0.09 1.46 8.00 -52.49 -0.42 1.04 16 29 H 0.36 7.76 8.56 -182.60 -1.56 6.20 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.36 7.15 -51.93 -0.37 0.99 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -28.65 310.76 -7.36 -36.01 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.43 Total: 6.36 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.17 Total: -14.27 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.87 Total: -42.44 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.30 Total: -6.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.65 -7.36 -36.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814880715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.170 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds