Wall clock time and date at job start Mon Mar 30 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99502 * 2 1 4 4 C 1.53003 * 109.47319 * 305.96787 * 3 2 1 5 5 C 1.50697 * 109.46990 * 65.97264 * 3 2 1 6 6 N 1.28005 * 120.00424 * 359.97438 * 5 3 2 7 7 N 1.40095 * 120.00264 * 179.97438 * 6 5 3 8 8 C 1.46497 * 120.00004 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47599 * 329.99871 * 8 7 6 10 10 C 1.53002 * 109.47335 * 90.00429 * 8 7 6 11 11 C 1.50707 * 109.47057 * 209.99942 * 8 7 6 12 12 H 1.07998 * 120.00177 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99954 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99912 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00088 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47082 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47000 * 120.00015 * 15 13 11 18 18 H 1.48499 * 109.47368 * 240.00383 * 15 13 11 19 19 C 1.53004 * 109.46912 * 185.97169 * 3 2 1 20 20 C 1.52996 * 117.49823 * 14.37369 * 19 3 2 21 21 C 1.53008 * 117.49698 * 305.71579 * 19 3 2 22 22 H 1.08998 * 109.46615 * 185.57424 * 1 2 3 23 23 H 1.08997 * 109.47344 * 305.57249 * 1 2 3 24 24 H 1.09004 * 109.47008 * 65.57267 * 1 2 3 25 25 H 1.08994 * 109.46895 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.47099 * 300.00395 * 4 3 2 27 27 H 1.09001 * 109.46961 * 59.99941 * 4 3 2 28 28 H 1.08000 * 119.99697 * 179.97438 * 5 3 2 29 29 H 0.97005 * 120.00026 * 0.02562 * 7 6 5 30 30 H 1.09005 * 109.46879 * 59.99707 * 10 8 7 31 31 H 1.08998 * 109.46845 * 299.99705 * 10 8 7 32 32 H 1.09001 * 109.47442 * 180.02562 * 10 8 7 33 33 H 0.96999 * 119.99476 * 180.02562 * 14 13 11 34 34 H 1.08995 * 115.54842 * 160.04697 * 19 3 2 35 35 H 1.09006 * 117.50441 * 0.02562 * 20 19 3 36 36 H 1.08999 * 117.49805 * 145.02117 * 20 19 3 37 37 H 1.08995 * 117.49634 * 214.97842 * 21 19 3 38 38 H 1.08998 * 117.49301 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4436 2.1161 -1.1675 5 6 1.6859 1.9997 1.2977 6 7 0.9853 1.4011 2.1862 7 7 0.6844 2.0462 3.3928 8 6 -0.1170 1.3609 4.4098 9 1 -0.8048 0.6684 3.9246 10 6 0.8077 0.5861 5.3509 11 6 -0.9012 2.3767 5.2000 12 1 -0.8119 3.4276 4.9676 13 6 -1.7334 1.9643 6.2190 14 7 -1.8425 0.6845 6.5017 15 14 -2.7059 3.2232 7.1980 16 1 -2.4092 4.5852 6.6859 17 1 -4.1580 2.9468 7.0554 18 1 -2.3242 3.1386 8.6306 19 6 3.5283 1.1880 -0.1501 20 6 4.0913 -0.1616 -0.6000 21 6 4.2701 0.2979 0.8491 22 1 -0.3632 -1.0228 0.0998 23 1 -0.3634 0.5978 0.8358 24 1 -0.3633 0.4250 -0.9357 25 1 1.8872 3.1116 -1.1677 26 1 1.6781 1.6139 -2.1061 27 1 0.3621 2.1998 -1.0606 28 1 2.0447 3.0023 1.4781 29 1 1.0066 2.9467 3.5548 30 1 1.4954 1.2787 5.8361 31 1 1.3748 -0.1486 4.7794 32 1 0.2114 0.0758 6.1073 33 1 -2.4283 0.3944 7.2184 34 1 4.0373 2.0869 -0.4979 35 1 3.3802 -0.9657 -0.7896 36 1 4.9709 -0.1506 -1.2436 37 1 5.2673 0.6110 1.1583 38 1 3.6766 -0.2036 1.6136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814880715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:11 Heat of formation + Delta-G solvation = 7.695062 kcal Electronic energy + Delta-G solvation = -17666.287558 eV Core-core repulsion = 14931.399983 eV Total energy + Delta-G solvation = -2734.887575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49100 -37.84239 -36.91963 -35.67930 -33.29809 -31.88221 -28.95668 -27.87437 -27.30762 -24.81845 -23.15081 -22.71459 -21.91487 -20.57133 -18.88766 -17.66560 -17.29134 -16.95089 -16.48137 -15.98387 -15.41058 -15.32690 -14.50853 -14.31029 -14.16477 -14.02070 -13.58807 -13.09495 -12.97248 -12.94070 -12.75661 -12.38566 -12.32748 -12.17100 -12.15121 -12.06867 -11.80788 -11.25233 -11.12420 -11.06526 -10.81495 -10.59254 -10.13222 -8.62839 -8.18700 -6.35676 1.40976 1.41662 1.53710 1.57375 2.16998 2.45012 2.94183 3.05546 3.10304 3.76370 3.93594 4.08023 4.27919 4.39842 4.51255 4.55724 4.61569 4.70461 4.74809 4.87717 4.91892 4.94762 4.97350 5.04403 5.13031 5.17304 5.28015 5.33923 5.38733 5.45896 5.53886 5.77647 5.86073 6.17638 6.41446 6.44439 6.86685 7.36480 7.88003 8.86822 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.005197 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.644114 B = 5386.599048 C = 5546.821751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.203 3.797 4 C -0.163 4.163 5 C -0.030 4.030 6 N -0.233 5.233 7 N -0.655 5.655 8 C 0.311 3.689 9 H -0.003 1.003 10 C -0.134 4.134 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.276 1.276 19 C -0.140 4.140 20 C -0.150 4.150 21 C -0.185 4.185 22 H 0.080 0.920 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.368 0.632 30 H 0.028 0.972 31 H 0.012 0.988 32 H 0.067 0.933 33 H 0.266 0.734 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 2.717 -14.655 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C 0.161 3.839 4 C -0.221 4.221 5 C -0.245 4.245 6 N -0.040 5.040 7 N -0.392 5.392 8 C 0.207 3.793 9 H 0.015 0.985 10 C -0.193 4.193 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.182 4.182 14 N -0.554 5.554 15 Si 0.796 3.204 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.159 4.159 20 C -0.187 4.187 21 C -0.222 4.222 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.126 0.874 29 H 0.205 0.795 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.517 1.463 -14.166 16.594 hybrid contribution -0.434 1.626 1.074 1.997 sum 8.083 3.090 -13.091 15.693 Atomic orbital electron populations 1.22819 0.80928 1.02615 1.00311 1.87836 1.20181 1.27337 1.94782 1.19761 0.92557 0.82321 0.89217 1.22293 1.01194 1.01321 0.97322 1.26329 1.01990 0.99443 0.96758 1.73476 1.10184 1.26292 0.94007 1.48612 1.61026 1.16278 1.13301 1.18006 0.86983 0.91159 0.83108 0.98502 1.22008 0.98514 0.98450 1.00377 1.21554 1.26177 0.93585 1.17139 0.92239 1.25729 0.97383 0.97401 0.97707 1.70036 1.38509 1.15646 1.31206 0.85316 0.78038 0.78884 0.78182 1.19128 1.20471 1.20189 1.22314 0.90800 0.97107 1.05669 1.22895 1.02654 0.96690 0.96446 1.22826 1.01352 1.04650 0.93343 0.90183 0.94436 0.92529 0.89342 0.89747 0.92753 0.87363 0.79500 0.95301 0.96851 0.91406 0.92430 0.83855 0.89301 0.86492 0.87600 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.87 113.37 1.12 2.03 16 2 O -0.38 -12.09 8.46 -148.98 -1.26 -13.35 16 3 C 0.20 5.42 0.90 -11.54 -0.01 5.41 16 4 C -0.16 -3.29 8.04 71.98 0.58 -2.71 16 5 C -0.03 -0.97 9.08 88.67 0.80 -0.17 16 6 N -0.23 -9.76 8.50 -50.47 -0.43 -10.19 16 7 N -0.65 -30.40 6.09 -172.52 -1.05 -31.45 16 8 C 0.31 16.82 3.23 44.25 0.14 16.96 16 9 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 10 C -0.13 -7.04 9.29 71.98 0.67 -6.37 16 11 C -0.55 -30.30 8.74 25.60 0.22 -30.07 16 12 H 0.06 3.22 7.79 -2.91 -0.02 3.19 16 13 C 0.02 0.98 5.30 84.65 0.45 1.43 16 14 N -0.92 -52.77 11.32 21.45 0.24 -52.52 16 15 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 C -0.14 -3.07 5.05 -10.79 -0.05 -3.13 16 20 C -0.15 -3.14 9.89 30.62 0.30 -2.84 16 21 C -0.18 -4.62 9.88 30.62 0.30 -4.32 16 22 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.04 1.41 5.70 -2.39 -0.01 1.39 16 24 H 0.06 1.42 6.67 -2.39 -0.02 1.41 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 1.20 6.60 -2.39 -0.02 1.18 16 28 H 0.11 3.21 8.00 -2.91 -0.02 3.18 16 29 H 0.37 15.90 8.56 -213.32 -1.83 14.07 16 30 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 33 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.17 7.15 -2.38 -0.02 2.15 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -63.62 310.76 3.26 -60.36 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.79 Total: 25.84 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 4.53 Total: -23.77 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -1.24 Total: -94.17 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.26 Total: -13.35 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.62 3.26 -60.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814880715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.053 kcal (2) G-P(sol) polarization free energy of solvation -63.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds